Wall clock time and date at job start Wed Apr 1 2020 02:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99794 * 2 1 4 4 C 1.52997 * 109.47334 * 293.95745 * 3 2 1 5 5 N 1.46507 * 109.47118 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99887 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99809 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99843 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.46976 * 180.02562 * 8 6 5 10 10 C 1.76210 * 100.00076 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99526 * 359.97438 * 10 9 8 12 12 C 1.38791 * 120.00089 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00322 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00222 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46856 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47320 * 120.00110 * 14 12 10 17 17 H 1.48499 * 109.47350 * 240.00495 * 14 12 10 18 18 C 1.46892 * 111.00098 * 123.95341 * 2 1 3 19 19 C 1.53004 * 109.46942 * 66.04787 * 18 2 1 20 20 N 1.46509 * 109.46984 * 179.97438 * 19 18 2 21 21 C 1.34769 * 124.17490 * 270.01577 * 20 19 18 22 22 O 1.21234 * 127.15997 * 359.92431 * 21 20 19 23 23 C 1.51580 * 105.68335 * 179.74750 * 21 20 19 24 24 N 1.47318 * 103.59365 * 0.33419 * 23 21 20 25 25 C 1.33788 * 124.17736 * 89.97947 * 20 19 18 26 26 O 1.21541 * 123.76957 * 0.02748 * 25 20 19 27 27 H 1.09002 * 109.46843 * 296.04336 * 1 2 3 28 28 H 1.08999 * 109.47335 * 56.04483 * 1 2 3 29 29 H 1.08994 * 109.47162 * 176.04612 * 1 2 3 30 30 H 1.09008 * 109.47261 * 53.95475 * 3 2 1 31 31 H 1.08996 * 109.47085 * 173.95274 * 3 2 1 32 32 H 1.09002 * 109.46807 * 299.99613 * 4 3 2 33 33 H 1.08996 * 109.47418 * 59.99734 * 4 3 2 34 34 H 0.96999 * 119.99985 * 359.97438 * 5 4 3 35 35 H 1.08997 * 109.47141 * 300.00299 * 8 6 5 36 36 H 1.08996 * 109.47092 * 59.99917 * 8 6 5 37 37 H 0.96999 * 120.00307 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.47592 * 306.04814 * 18 2 1 39 39 H 1.09000 * 109.47333 * 186.04443 * 18 2 1 40 40 H 1.08996 * 109.47286 * 60.00309 * 19 18 2 41 41 H 1.08992 * 109.47098 * 299.99879 * 19 18 2 42 42 H 1.08995 * 110.69021 * 241.76513 * 23 21 20 43 43 H 1.08998 * 110.51199 * 118.81345 * 23 21 20 44 44 H 0.97001 * 126.69459 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 7 2.1569 3.4251 -1.3184 6 6 1.9565 4.2239 -2.3853 7 8 1.3414 3.8104 -3.3453 8 6 2.4965 5.6307 -2.3852 9 16 2.0660 6.4423 -3.9447 10 6 2.7994 8.0224 -3.6801 11 1 3.3183 8.2288 -2.7557 12 6 2.7101 9.0018 -4.6595 13 7 2.0772 8.7504 -5.7859 14 14 3.4870 10.6772 -4.3787 15 1 4.1336 10.7052 -3.0421 16 1 4.5074 10.9317 -5.4270 17 1 2.4381 11.7264 -4.4437 18 6 1.9955 -0.7659 1.1375 19 6 1.6315 -2.2426 0.9702 20 7 2.1571 -3.0066 2.1045 21 6 3.3798 -3.5726 2.1345 22 8 4.2200 -3.5476 1.2608 23 6 3.4878 -4.2430 3.4897 24 7 2.1886 -3.9565 4.1223 25 6 1.4828 -3.2281 3.2386 26 8 0.3582 -2.8170 3.4471 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5611 1.9274 0.8310 31 1 3.0797 1.3445 0.1083 32 1 2.0658 1.5016 -2.1491 33 1 0.5471 2.0845 -1.4264 34 1 2.6491 3.7556 -0.5507 35 1 2.0619 6.1867 -1.5546 36 1 3.5807 5.6037 -2.2765 37 1 2.0145 9.4349 -6.4703 38 1 1.5612 -0.3873 2.0628 39 1 3.0798 -0.6611 1.1756 40 1 2.0659 -2.6213 0.0451 41 1 0.5473 -2.3475 0.9322 42 1 4.3013 -3.8085 4.0705 43 1 3.6292 -5.3176 3.3740 44 1 1.9002 -4.2346 5.0057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663145888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:52 Heat of formation + Delta-G solvation = -98.742581 kcal Electronic energy + Delta-G solvation = -26377.480309 eV Core-core repulsion = 22263.159632 eV Total energy + Delta-G solvation = -4114.320677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.32792 -40.67824 -39.66753 -39.07473 -37.19918 -36.28503 -35.31444 -34.58194 -32.04890 -30.62517 -29.04576 -28.57692 -27.69291 -27.04948 -24.13674 -23.74890 -22.22232 -21.74138 -21.29354 -19.83055 -19.06418 -18.22948 -17.91866 -17.68386 -17.39761 -17.11123 -16.87901 -16.74190 -16.38451 -16.25254 -15.98936 -15.49581 -15.44517 -15.30037 -15.11778 -14.80994 -14.65588 -14.33968 -14.25492 -14.12739 -13.54456 -13.36866 -13.15820 -12.99260 -12.90978 -12.63222 -12.54538 -12.25572 -12.16432 -12.05630 -11.70973 -11.32912 -11.15650 -11.04855 -10.92947 -10.41861 -10.26907 -10.13366 -9.51244 -8.66644 -8.34505 -6.12761 0.61499 1.12102 1.27182 1.41857 1.47086 1.58243 1.60316 1.89810 2.15586 2.27340 2.29164 2.94603 2.99780 3.09270 3.33738 3.65196 3.76794 3.81969 3.99854 4.03219 4.16617 4.28941 4.30705 4.33224 4.35459 4.38942 4.48402 4.50711 4.51381 4.59495 4.77870 4.81628 4.84481 4.92060 5.06064 5.37476 5.42520 5.83331 5.84742 5.86558 6.02727 6.20390 6.38338 6.48678 7.06889 7.08993 7.23238 8.75044 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.030334 B = 0.001449 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.826475 B =19322.421040 C =19557.421158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.542 5.542 3 C 0.057 3.943 4 C 0.127 3.873 5 N -0.712 5.712 6 C 0.534 3.466 7 O -0.566 6.566 8 C -0.129 4.129 9 S -0.153 6.153 10 C -0.546 4.546 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.256 1.256 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.053 3.947 19 C 0.122 3.878 20 N -0.579 5.579 21 C 0.514 3.486 22 O -0.500 6.500 23 C 0.074 3.926 24 N -0.710 5.710 25 C 0.695 3.305 26 O -0.585 6.585 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.417 0.583 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.271 0.729 38 H 0.039 0.961 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.283 -29.097 27.157 40.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.267 5.267 3 C -0.071 4.071 4 C 0.003 3.997 5 N -0.367 5.367 6 C 0.320 3.680 7 O -0.444 6.444 8 C -0.280 4.280 9 S 0.074 5.926 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.180 1.180 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.076 4.076 19 C 0.000 4.000 20 N -0.326 5.326 21 C 0.303 3.697 22 O -0.371 6.371 23 C -0.052 4.052 24 N -0.375 5.375 25 C 0.395 3.605 26 O -0.462 6.462 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.254 0.746 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 3.222 -29.729 24.555 38.693 hybrid contribution 0.538 1.944 1.980 2.826 sum 3.760 -27.785 26.534 38.603 Atomic orbital electron populations 1.22600 0.86373 1.03255 1.01155 1.61706 1.08903 1.13351 1.42710 1.22144 1.01682 0.87997 0.95278 1.21233 0.98852 0.81022 0.98640 1.45610 1.58180 1.13612 1.19271 1.20071 0.78851 0.86737 0.82359 1.90699 1.41974 1.75896 1.35848 1.23363 1.05388 0.95366 1.03867 1.85611 1.74405 1.12736 1.19883 1.23250 1.41033 0.98604 1.06503 0.89813 1.26136 0.95503 1.03605 0.93931 1.70193 1.41343 1.35969 1.07313 0.84889 0.77885 0.76139 0.78919 1.17989 1.19944 1.19947 1.22280 1.00822 0.92789 0.91742 1.21588 1.01007 0.90323 0.87105 1.46426 1.18033 1.50589 1.17505 1.21655 0.80114 0.77461 0.90428 1.90860 1.43538 1.58767 1.43955 1.22732 0.88047 1.05319 0.89097 1.45423 1.16494 1.56065 1.19503 1.16065 0.84022 0.79542 0.80865 1.91018 1.18523 1.57351 1.79318 0.94932 0.91046 0.90094 0.92677 0.88604 0.92111 0.92313 0.74587 0.87060 0.87028 0.91994 0.94249 0.89951 0.87885 0.88660 0.82535 0.82492 0.69874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.13 127.69 1.17 1.39 16 2 N -0.54 -8.89 4.76 -922.46 -4.39 -13.29 16 3 C 0.06 0.91 5.07 86.30 0.44 1.35 16 4 C 0.13 2.93 5.61 86.38 0.48 3.42 16 5 N -0.71 -17.97 5.56 -463.05 -2.57 -20.55 16 6 C 0.53 19.95 7.85 87.66 0.69 20.64 16 7 O -0.57 -26.86 15.86 -3.04 -0.05 -26.91 16 8 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.55 -31.35 9.50 67.95 0.65 -30.70 16 11 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 12 C 0.01 0.74 5.49 84.86 0.47 1.20 16 13 N -0.91 -56.39 13.22 21.65 0.29 -56.11 16 14 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 15 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 C 0.05 0.75 5.28 86.31 0.46 1.21 16 19 C 0.12 1.68 5.62 86.38 0.49 2.16 16 20 N -0.58 -6.94 2.60 -773.11 -2.01 -8.95 16 21 C 0.51 4.94 8.32 87.94 0.73 5.68 16 22 O -0.50 -8.55 17.76 -2.89 -0.05 -8.60 16 23 C 0.07 -0.08 7.97 85.76 0.68 0.60 16 24 N -0.71 -1.93 6.58 -480.31 -3.16 -5.10 16 25 C 0.69 8.75 8.62 179.44 1.55 10.30 16 26 O -0.59 -12.46 17.48 -3.84 -0.07 -12.52 16 27 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 1.26 6.30 -2.39 -0.02 1.25 16 29 H 0.08 1.14 6.47 -2.39 -0.02 1.12 16 30 H 0.06 0.78 8.12 -2.38 -0.02 0.76 16 31 H 0.10 1.31 7.93 -2.39 -0.02 1.29 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.50 6.47 -2.39 -0.02 1.49 16 34 H 0.42 7.32 8.47 -92.71 -0.79 6.53 16 35 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 36 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.04 0.61 8.12 -2.39 -0.02 0.59 16 39 H 0.08 1.16 7.93 -2.39 -0.02 1.14 16 40 H 0.10 1.49 8.00 -2.39 -0.02 1.47 16 41 H 0.10 1.37 6.27 -2.39 -0.01 1.36 16 42 H 0.16 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H 0.16 -1.01 8.14 -2.39 -0.02 -1.03 16 44 H 0.45 -0.84 8.96 -92.71 -0.83 -1.67 16 Total: -1.00 -89.10 387.92 -3.49 -92.59 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -0.56 Total: 10.81 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 8.23 Total: 12.59 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -11.86 Total: -103.99 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -0.17 Total: -48.03 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -89.10 -3.49 -92.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663145888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.157 kcal (2) G-P(sol) polarization free energy of solvation -89.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds