Wall clock time and date at job start Wed Apr 1 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99788 * 2 1 4 4 H 1.48500 * 109.47031 * 275.26820 * 3 2 1 5 5 H 1.48502 * 109.47192 * 35.26711 * 3 2 1 6 6 H 1.48495 * 109.47048 * 155.26450 * 3 2 1 7 7 C 1.38802 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00293 * 37.18038 * 7 2 1 9 9 N 1.36935 * 119.99929 * 216.90474 * 7 2 1 10 10 C 1.46965 * 120.59216 * 27.02308 * 9 7 2 11 11 C 1.53817 * 108.39949 * 124.76089 * 10 9 7 12 12 N 1.46964 * 108.57627 * 49.63787 * 11 10 9 13 13 C 1.34782 * 120.59613 * 124.62930 * 12 11 10 14 14 O 1.21277 * 120.00198 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.99489 * 0.02562 * 13 12 11 16 16 C 1.53002 * 109.46810 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47002 * 180.02562 * 16 15 13 18 18 C 1.53005 * 109.47044 * 180.02562 * 17 16 15 19 19 C 1.52995 * 109.47044 * 179.97438 * 18 17 16 20 20 H 1.08998 * 110.17639 * 55.35762 * 19 18 17 21 21 C 1.54110 * 110.20011 * 177.25476 * 19 18 17 22 22 C 1.54105 * 110.76305 * 169.26270 * 21 19 18 23 23 S 1.83463 * 105.71532 * 309.79946 * 22 21 19 24 24 S 1.83466 * 110.20239 * 293.54510 * 19 18 17 25 25 C 1.46965 * 118.81258 * 304.64327 * 12 11 10 26 26 C 1.46964 * 120.59497 * 207.30817 * 9 7 2 27 27 H 0.96998 * 120.00202 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.61235 * 244.53904 * 10 9 7 29 29 H 1.08994 * 109.61251 * 5.05387 * 10 9 7 30 30 H 1.09000 * 109.73933 * 289.85274 * 11 10 9 31 31 H 1.08997 * 109.53195 * 169.30223 * 11 10 9 32 32 H 1.08998 * 109.47085 * 299.99920 * 15 13 12 33 33 H 1.09000 * 109.47063 * 60.00391 * 15 13 12 34 34 H 1.08995 * 109.47490 * 300.00845 * 16 15 13 35 35 H 1.09000 * 109.46867 * 60.00420 * 16 15 13 36 36 H 1.08996 * 109.47474 * 299.99964 * 17 16 15 37 37 H 1.08992 * 109.47239 * 60.00329 * 17 16 15 38 38 H 1.08998 * 109.47024 * 299.99721 * 18 17 16 39 39 H 1.09000 * 109.47154 * 60.00211 * 18 17 16 40 40 H 1.08997 * 109.23127 * 289.60855 * 21 19 18 41 41 H 1.08997 * 109.22742 * 48.91836 * 21 19 18 42 42 H 1.09000 * 110.20149 * 190.74312 * 22 21 19 43 43 H 1.08996 * 110.26933 * 68.89793 * 22 21 19 44 44 H 1.08997 * 109.61320 * 295.48755 * 25 12 11 45 45 H 1.09006 * 109.75342 * 175.05862 * 25 12 11 46 46 H 1.08997 * 109.61084 * 354.94037 * 26 9 7 47 47 H 1.09003 * 109.61453 * 115.45900 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3863 2.1107 -1.3942 5 1 1.5077 2.6180 0.8084 6 1 3.5989 1.4107 0.5858 7 6 2.0103 -1.2021 0.0005 8 1 1.6349 -2.0426 -0.5643 9 7 3.1738 -1.3206 0.7127 10 6 3.4127 -0.4870 1.8993 11 6 3.7248 -1.4122 3.0878 12 7 4.7598 -2.3708 2.6756 13 6 5.9054 -2.4868 3.3760 14 8 6.7525 -3.2810 3.0260 15 6 6.1338 -1.6294 4.5942 16 6 7.5005 -1.9569 5.1992 17 6 7.7321 -1.0870 6.4363 18 6 9.0990 -1.4139 7.0410 19 6 9.3309 -0.5435 8.2777 20 1 8.5130 -0.6721 8.9867 21 6 10.6739 -0.9075 8.9403 22 6 11.0492 0.1276 10.0186 23 16 10.8800 1.7674 9.2136 24 16 9.4777 1.2198 7.7930 25 6 4.5233 -3.2005 1.4858 26 6 4.2088 -2.2792 0.3006 27 1 -0.4850 0.8400 -0.0004 28 1 4.2584 0.1760 1.7164 29 1 2.5225 0.1031 2.1170 30 1 2.8238 -1.9505 3.3818 31 1 4.0892 -0.8183 3.9260 32 1 6.1048 -0.5778 4.3090 33 1 5.3543 -1.8281 5.3296 34 1 7.5291 -3.0085 5.4844 35 1 8.2803 -1.7585 4.4639 36 1 7.7034 -0.0352 6.1515 37 1 6.9523 -1.2857 7.1714 38 1 9.1281 -2.4656 7.3258 39 1 9.8786 -1.2148 6.3057 40 1 10.5918 -1.8919 9.4009 41 1 11.4542 -0.9326 8.1798 42 1 12.0773 -0.0264 10.3464 43 1 10.3690 0.0527 10.8669 44 1 3.6791 -3.8661 1.6658 45 1 5.4132 -3.7899 1.2649 46 1 3.8444 -2.8730 -0.5377 47 1 5.1098 -1.7409 0.0065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073100950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:40 Heat of formation + Delta-G solvation = -14.875567 kcal Electronic energy + Delta-G solvation = -25367.438143 eV Core-core repulsion = 21803.047427 eV Total energy + Delta-G solvation = -3564.390716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.133 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -39.82552 -37.50742 -36.98049 -34.82344 -33.94797 -31.93356 -31.31187 -30.52598 -27.86676 -26.77969 -24.23892 -23.24230 -23.07336 -22.27477 -21.42407 -20.48302 -19.11851 -18.62685 -17.18997 -17.02119 -16.20776 -16.02336 -15.86313 -15.61072 -15.09081 -14.90569 -14.58334 -14.31480 -14.25921 -13.84226 -13.58384 -13.32365 -13.13984 -12.99428 -12.78260 -12.49411 -12.42032 -12.18189 -12.07830 -11.93292 -11.67828 -11.41365 -11.28156 -11.00025 -10.97558 -10.89630 -10.81167 -10.63713 -10.49241 -10.38152 -10.20003 -10.12358 -9.52536 -9.46471 -8.73973 -8.23804 -7.56040 -7.04071 -6.13241 -3.32593 -0.92677 0.77321 1.68067 2.88275 3.27872 3.34509 3.46431 3.51721 3.58675 3.81363 4.18309 4.32860 4.44902 4.49053 4.63342 4.70729 4.72616 4.82699 4.83563 4.86992 5.09764 5.13764 5.20052 5.23529 5.30766 5.46164 5.51325 5.56698 5.60473 5.65255 5.74279 5.80412 5.89816 6.02455 6.07629 6.10679 6.17249 6.25116 6.48608 6.56113 6.72953 6.92020 7.76640 7.85083 8.21351 8.44656 8.85088 9.63275 10.03637 11.01116 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.017056 B = 0.002010 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.232312 B =13928.437337 C =15159.674297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.040 3.960 3 Si 0.834 3.166 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.258 1.258 7 C -0.275 4.275 8 H 0.082 0.918 9 N -0.599 5.599 10 C 0.131 3.869 11 C 0.085 3.915 12 N -0.600 5.600 13 C 0.509 3.491 14 O -0.559 6.559 15 C -0.140 4.140 16 C -0.100 4.100 17 C -0.122 4.122 18 C -0.099 4.099 19 C -0.041 4.041 20 H 0.109 0.891 21 C -0.136 4.136 22 C -0.073 4.073 23 S -0.205 6.205 24 S -0.171 6.171 25 C 0.095 3.905 26 C 0.132 3.868 27 H 0.263 0.737 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.016 -3.406 21.600 29.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.162 4.162 3 Si 0.661 3.339 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.182 1.182 7 C -0.403 4.403 8 H 0.100 0.900 9 N -0.323 5.323 10 C 0.004 3.996 11 C -0.039 4.039 12 N -0.332 5.332 13 C 0.298 3.702 14 O -0.438 6.438 15 C -0.180 4.180 16 C -0.138 4.138 17 C -0.160 4.160 18 C -0.139 4.139 19 C -0.170 4.170 20 H 0.127 0.873 21 C -0.177 4.177 22 C -0.222 4.222 23 S -0.089 6.089 24 S -0.055 6.055 25 C -0.029 4.029 26 C 0.005 3.995 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.140 0.860 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 20.252 -1.992 20.764 29.073 hybrid contribution 0.193 -0.291 0.523 0.629 sum 20.445 -2.282 21.287 29.604 Atomic orbital electron populations 1.70117 1.06211 1.26978 1.48429 1.25240 0.94814 0.97439 0.98692 0.87609 0.82123 0.86079 0.78131 1.21947 1.21992 1.18231 1.18762 0.96189 0.96859 1.28447 0.89999 1.44298 1.17449 1.43605 1.26916 1.21789 0.99631 0.92216 0.85971 1.22593 0.90777 0.91901 0.98645 1.48066 1.17507 1.39493 1.28145 1.20634 0.81291 0.83579 0.84706 1.90635 1.43936 1.38922 1.70322 1.21685 0.99473 1.00770 0.96105 1.21288 0.96091 1.00025 0.96362 1.21692 0.96041 1.00561 0.97738 1.21588 0.99305 0.98638 0.94394 1.24358 1.00681 0.90624 1.01375 0.87279 1.22814 0.96538 1.00388 0.97972 1.24372 1.07234 0.89984 1.00607 1.89822 1.56726 1.19330 1.43024 1.90050 1.55317 1.14976 1.45167 1.22182 1.01182 0.93739 0.85758 1.21355 0.91786 0.91839 0.94486 0.92682 0.94964 0.90402 0.90896 0.90658 0.88962 0.89097 0.91156 0.91065 0.91285 0.91435 0.89635 0.89992 0.87264 0.88740 0.85955 0.87969 0.91616 0.89775 0.90750 0.95670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.65 13.97 55.49 0.78 -24.87 16 2 C 0.04 1.10 4.81 -17.43 -0.08 1.01 16 3 Si 0.83 20.53 26.48 -169.99 -4.50 16.03 16 4 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.03 4.98 56.52 0.28 -5.75 16 7 C -0.28 -7.36 9.84 -15.06 -0.15 -7.51 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 9 N -0.60 -13.68 2.69 -171.76 -0.46 -14.14 16 10 C 0.13 2.66 4.58 -3.36 -0.02 2.64 16 11 C 0.09 1.38 6.52 -3.36 -0.02 1.36 16 12 N -0.60 -10.03 2.95 -172.20 -0.51 -10.54 16 13 C 0.51 8.02 7.70 -10.98 -0.08 7.94 16 14 O -0.56 -10.33 15.39 5.56 0.09 -10.24 16 15 C -0.14 -1.59 4.04 -27.88 -0.11 -1.71 16 16 C -0.10 -0.99 4.50 -26.73 -0.12 -1.11 16 17 C -0.12 -0.92 5.07 -26.73 -0.14 -1.05 16 18 C -0.10 -0.59 4.75 -26.73 -0.13 -0.71 16 19 C -0.04 -0.23 3.04 -26.15 -0.08 -0.31 16 20 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 21 C -0.14 -0.51 5.38 -25.57 -0.14 -0.65 16 22 C -0.07 -0.32 7.08 37.73 0.27 -0.05 16 23 S -0.21 -1.82 23.50 -89.79 -2.11 -3.93 16 24 S -0.17 -1.62 21.90 -89.79 -1.97 -3.59 16 25 C 0.10 1.66 6.59 -3.59 -0.02 1.63 16 26 C 0.13 2.58 6.67 -3.59 -0.02 2.56 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.67 6.76 -51.93 -0.35 0.32 16 29 H 0.08 1.69 5.65 -51.93 -0.29 1.40 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 0.96 5.91 -51.93 -0.31 0.66 16 32 H 0.09 1.00 7.72 -51.93 -0.40 0.60 16 33 H 0.09 0.88 7.91 -51.93 -0.41 0.46 16 34 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.07 0.60 7.26 -51.93 -0.38 0.23 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.09 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 46 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -32.62 384.90 -11.82 -44.43 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -8.08 Total: -2.99 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -0.85 Total: 4.05 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.20 Total: -49.55 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.50 Total: 16.03 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -4.08 Total: -7.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.62 -11.82 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.559 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds