Wall clock time and date at job start Wed Apr 1 2020 02:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46639 * 126.56917 * 180.02562 * 8 6 5 10 10 C 1.50778 * 107.70394 * 179.97438 * 9 8 6 11 11 C 1.38458 * 131.19353 * 180.02562 * 10 9 8 12 12 C 1.38153 * 120.16261 * 179.97438 * 11 10 9 13 13 C 1.38214 * 119.98826 * 0.02562 * 12 11 10 14 14 C 1.38374 * 119.93229 * 359.97438 * 13 12 11 15 15 F 1.35101 * 119.97548 * 180.02562 * 14 13 12 16 16 C 1.38032 * 108.86056 * 0.02562 * 10 9 8 17 17 C 1.46640 * 126.56791 * 359.68966 * 8 6 5 18 18 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 19 19 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 20 20 C 1.46496 * 125.97468 * 359.94647 * 19 2 1 21 21 C 1.50702 * 109.47635 * 89.99791 * 20 19 2 22 22 H 1.07999 * 119.99790 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99972 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00160 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46844 * 60.00071 * 25 23 21 27 27 H 1.48494 * 109.46947 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47031 * 300.00020 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 32 32 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 33 33 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 34 34 H 1.08999 * 109.81139 * 299.55117 * 9 8 6 35 35 H 1.09004 * 109.80695 * 60.38495 * 9 8 6 36 36 H 1.07999 * 119.91904 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.00835 * 180.02562 * 12 11 10 38 38 H 1.08002 * 120.03748 * 180.02562 * 13 12 11 39 39 H 1.08997 * 109.80975 * 299.55017 * 17 8 6 40 40 H 1.09004 * 109.80980 * 60.45215 * 17 8 6 41 41 H 1.09001 * 109.47030 * 210.00125 * 20 19 2 42 42 H 1.09005 * 109.47259 * 329.99077 * 20 19 2 43 43 H 0.96997 * 120.00168 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.7488 5.0709 0.0225 10 6 7.1911 5.5108 0.0241 11 6 7.7594 6.7733 0.0306 12 6 9.1335 6.9160 0.0311 13 6 9.9443 5.7967 0.0246 14 6 9.3782 4.5341 0.0180 15 9 10.1699 3.4393 0.0121 16 6 7.9989 4.3915 0.0175 17 6 7.1275 3.1611 0.0186 18 7 3.6337 -0.6575 -0.0044 19 7 2.3017 -1.0909 -0.0060 20 6 1.8501 -2.4845 -0.0124 21 6 1.6941 -2.9555 -1.4354 22 1 1.9094 -2.2838 -2.2532 23 6 1.2765 -4.2440 -1.6933 24 7 1.0148 -5.0622 -0.6974 25 14 1.0824 -4.8275 -3.4572 26 1 2.3876 -4.7262 -4.1585 27 1 0.6260 -6.2406 -3.4637 28 1 0.0802 -3.9799 -4.1515 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9720 2.1211 0.0004 33 1 5.6587 1.0778 0.0037 34 1 5.2471 5.4514 -0.8672 35 1 5.2477 5.4424 0.9164 36 1 7.1269 7.6487 0.0353 37 1 9.5742 7.9020 0.0367 38 1 11.0186 5.9073 0.0254 39 1 7.3243 2.5671 0.9110 40 1 7.3289 2.5676 -0.8732 41 1 2.5851 -3.1070 0.4978 42 1 0.8919 -2.5584 0.5019 43 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459489621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:52 Heat of formation + Delta-G solvation = 50.780930 kcal Electronic energy + Delta-G solvation = -28447.517648 eV Core-core repulsion = 24216.609635 eV Total energy + Delta-G solvation = -4230.908013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.30215 -41.22327 -40.49198 -39.23266 -36.55394 -34.88026 -33.39552 -31.89956 -31.58302 -31.19316 -30.64364 -28.22622 -26.81460 -26.33558 -25.67055 -23.05089 -22.28349 -22.21000 -21.16074 -19.74979 -19.40742 -18.00346 -17.32970 -16.86935 -16.77579 -16.65974 -16.29996 -16.02131 -15.87235 -15.46950 -14.87046 -14.65954 -14.52824 -14.17510 -13.88700 -13.72834 -13.45067 -13.39427 -13.06667 -12.87766 -12.51400 -12.46122 -12.31272 -12.12114 -11.98925 -11.75129 -11.65406 -11.40118 -11.09821 -10.81793 -10.48951 -10.26618 -10.08824 -9.71521 -9.71093 -9.54148 -9.16346 -8.76667 -8.63315 -7.92578 -7.42253 -6.24553 -4.32316 0.58153 0.60858 2.06359 2.58991 2.97545 3.02540 3.24086 3.26190 3.27856 3.33378 3.62893 3.78545 3.81039 3.88275 4.12028 4.32047 4.39020 4.64125 4.73919 4.90936 4.98235 5.08835 5.11532 5.20147 5.29359 5.40557 5.44533 5.54983 5.62205 5.71340 5.75990 5.89992 5.95828 6.11791 6.21956 6.30234 6.49163 6.60356 6.62169 6.90676 7.01191 7.09414 7.48021 7.67893 7.81078 7.90055 8.07092 8.45401 8.66341 8.76086 9.33961 10.82567 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.018731 B = 0.002095 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.488645 B =13363.474881 C =14264.958400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.281 3.719 5 N -0.639 5.639 6 C 0.742 3.258 7 O -0.555 6.555 8 N -0.633 5.633 9 C 0.171 3.829 10 C -0.071 4.071 11 C -0.106 4.106 12 C -0.084 4.084 13 C -0.152 4.152 14 C 0.126 3.874 15 F -0.135 7.135 16 C -0.142 4.142 17 C 0.145 3.855 18 N -0.321 5.321 19 N -0.317 5.317 20 C 0.259 3.741 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.275 1.275 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.407 0.593 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.592 24.000 3.028 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.320 4.320 4 C 0.027 3.973 5 N -0.288 5.288 6 C 0.444 3.556 7 O -0.429 6.429 8 N -0.373 5.373 9 C 0.048 3.952 10 C -0.071 4.071 11 C -0.124 4.124 12 C -0.102 4.102 13 C -0.170 4.170 14 C 0.107 3.893 15 F -0.113 7.113 16 C -0.143 4.143 17 C 0.022 3.978 18 N -0.152 5.152 19 N -0.100 5.100 20 C 0.141 3.859 21 C -0.575 4.575 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.178 0.822 33 H 0.242 0.758 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.309 22.867 3.075 27.149 hybrid contribution 0.384 -0.231 -0.955 1.054 sum 14.692 22.636 2.120 27.069 Atomic orbital electron populations 1.20378 0.87892 1.03874 1.02534 1.21058 0.94921 0.87083 1.00843 1.21226 0.89618 0.99851 1.21285 1.18620 0.86344 0.89269 1.03023 1.41308 1.07874 1.03321 1.76336 1.14760 0.82554 0.80156 0.78151 1.90905 1.22180 1.73283 1.56549 1.46809 1.04274 1.06505 1.79699 1.20029 0.92109 0.79230 1.03808 1.20255 0.95109 0.93160 0.98614 1.20563 0.94998 0.95889 1.00966 1.20968 0.92787 0.98634 0.97794 1.21115 1.01418 0.90547 1.03947 1.17096 0.86025 0.83460 1.02769 1.91532 1.73677 1.52411 1.93697 1.20174 0.92223 0.96828 1.05112 1.20223 0.80098 0.94227 1.03240 1.77255 1.00040 1.08198 1.29701 1.48985 1.00819 1.07786 1.52364 1.19683 0.95974 0.71324 0.98889 1.21292 1.46885 0.97957 0.91377 0.91790 1.24928 0.94694 0.96041 0.98121 1.69908 1.44858 1.07002 1.31185 0.86413 0.78811 0.77647 0.83802 1.20006 1.20971 1.19917 0.91076 0.89906 0.90603 0.82231 0.75815 0.89219 0.89245 0.84661 0.84244 0.84068 0.89560 0.89564 0.93008 0.92763 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.96 6.93 -82.28 -0.57 1.40 16 3 C -0.29 -6.03 9.52 -39.83 -0.38 -6.41 16 4 C 0.28 5.83 8.11 -154.36 -1.25 4.57 16 5 N -0.64 -10.45 5.42 -15.51 -0.08 -10.53 16 6 C 0.74 11.55 8.48 -86.92 -0.74 10.81 16 7 O -0.55 -10.24 13.84 5.28 0.07 -10.17 16 8 N -0.63 -7.36 3.34 -181.87 -0.61 -7.97 16 9 C 0.17 1.58 6.91 -5.08 -0.04 1.54 16 10 C -0.07 -0.55 6.22 -104.58 -0.65 -1.20 16 11 C -0.11 -0.60 10.04 -39.53 -0.40 -0.99 16 12 C -0.08 -0.41 10.04 -39.62 -0.40 -0.81 16 13 C -0.15 -0.93 10.03 -39.54 -0.40 -1.32 16 14 C 0.13 1.05 7.30 -39.37 -0.29 0.76 16 15 F -0.13 -1.27 17.27 2.25 0.04 -1.23 16 16 C -0.14 -1.24 6.20 -104.51 -0.65 -1.89 16 17 C 0.15 1.36 6.22 -5.08 -0.03 1.33 16 18 N -0.32 -7.51 12.59 31.44 0.40 -7.11 16 19 N -0.32 -7.58 3.59 -58.32 -0.21 -7.79 16 20 C 0.26 6.67 5.81 -5.20 -0.03 6.64 16 21 C -0.54 -14.82 9.39 -34.44 -0.32 -15.14 16 22 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -25.09 13.29 55.43 0.74 -24.36 16 25 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.53 7.71 -51.93 -0.40 1.12 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.16 3.26 5.91 -52.49 -0.31 2.95 16 33 H 0.41 5.53 7.87 -40.82 -0.32 5.21 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 37 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 38 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -33.17 373.16 -10.13 -43.30 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.20 Total: 4.26 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -5.88 Total: -0.19 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.23 Total: -57.76 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.17 -10.13 -43.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459489621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.083 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds