Wall clock time and date at job start Wed Apr 1 2020 02:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47284 * 280.67102 * 3 2 1 5 5 N 1.46899 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.46900 * 110.99862 * 294.30014 * 5 4 3 7 7 C 1.53241 * 109.34406 * 172.74559 * 6 5 4 8 8 N 1.47080 * 108.51553 * 53.82666 * 7 6 5 9 9 C 1.34776 * 120.87649 * 128.79952 * 8 7 6 10 10 O 1.21611 * 120.00425 * 174.77108 * 9 8 7 11 11 C 1.47430 * 120.00156 * 354.76758 * 9 8 7 12 12 C 1.39681 * 120.21357 * 35.49541 * 11 9 8 13 13 C 1.37811 * 119.93700 * 179.97438 * 12 11 9 14 14 C 1.38655 * 120.38431 * 0.02562 * 13 12 11 15 15 C 1.37919 * 120.43413 * 359.97438 * 14 13 12 16 16 C 1.39108 * 120.04961 * 359.73864 * 15 14 13 17 17 S 1.76205 * 120.18564 * 180.25959 * 16 15 14 18 18 C 1.76196 * 100.00130 * 352.50794 * 17 16 15 19 19 H 1.08001 * 120.00428 * 354.38050 * 18 17 16 20 20 C 1.38805 * 120.00035 * 174.37679 * 18 17 16 21 21 N 1.31551 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00027 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47179 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46987 * 120.00467 * 22 20 18 25 25 H 1.48501 * 109.47065 * 240.00043 * 22 20 18 26 26 C 1.47078 * 118.24215 * 308.81207 * 8 7 6 27 27 C 1.46897 * 111.00308 * 169.99965 * 5 4 3 28 28 H 4.44644 * 5.63365 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47229 * 40.66850 * 3 2 1 30 30 H 1.09007 * 109.46781 * 160.66847 * 3 2 1 31 31 H 1.09000 * 109.46782 * 300.00022 * 4 3 2 32 32 H 1.08992 * 109.47461 * 59.99702 * 4 3 2 33 33 H 1.08997 * 109.49428 * 292.70871 * 6 5 4 34 34 H 1.09004 * 109.49344 * 52.78231 * 6 5 4 35 35 H 1.09000 * 109.62830 * 294.12280 * 7 6 5 36 36 H 1.09001 * 109.62862 * 173.53688 * 7 6 5 37 37 H 1.07997 * 120.03157 * 359.97438 * 12 11 9 38 38 H 1.07996 * 119.80605 * 180.02562 * 13 12 11 39 39 H 1.07998 * 119.78747 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.97329 * 180.02562 * 15 14 13 41 41 H 0.96999 * 120.00300 * 179.97438 * 21 20 18 42 42 H 1.08990 * 109.63253 * 291.47990 * 26 8 7 43 43 H 1.08999 * 109.62994 * 170.89284 * 26 8 7 44 44 H 1.09002 * 109.48964 * 307.20721 * 27 5 4 45 45 H 1.08997 * 109.49311 * 67.29217 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.2662 1.4175 5 7 4.6251 -0.2649 1.4176 6 6 5.1526 -1.3882 0.6314 7 6 6.6734 -1.2494 0.5050 8 7 7.2437 -1.1122 1.8538 9 6 8.2627 -1.8968 2.2570 10 8 8.7849 -1.7072 3.3387 11 6 8.7442 -2.9849 1.3866 12 6 8.7580 -2.8217 -0.0006 13 6 9.2098 -3.8424 -0.8087 14 6 9.6515 -5.0336 -0.2532 15 6 9.6446 -5.2116 1.1144 16 6 9.1979 -4.1909 1.9475 17 16 9.1941 -4.4119 3.6956 18 6 9.6201 -6.1190 3.7892 19 1 9.7037 -6.7051 2.8859 20 6 9.8484 -6.7107 5.0239 21 7 9.7462 -5.9970 6.1243 22 14 10.2993 -8.5207 5.1232 23 1 10.3487 -9.0944 3.7543 24 1 11.6292 -8.6648 5.7681 25 1 9.2792 -9.2417 5.9261 26 6 6.6724 -0.0964 2.7509 27 6 5.1515 -0.2808 2.7890 28 1 -1.0499 0.0002 0.0002 29 1 3.0097 -0.7786 -0.6697 30 1 3.0088 0.9706 -0.3402 31 1 2.7924 0.5131 2.0872 32 1 2.7933 -1.2360 1.7577 33 1 4.9134 -2.3265 1.1319 34 1 4.7027 -1.3802 -0.3614 35 1 6.9125 -0.3648 -0.0853 36 1 7.0833 -2.1368 0.0226 37 1 8.4149 -1.8964 -0.4393 38 1 9.2200 -3.7138 -1.8809 39 1 10.0031 -5.8273 -0.8956 40 1 9.9907 -6.1423 1.5392 41 1 9.9053 -6.4105 6.9871 42 1 6.9113 0.8989 2.3765 43 1 7.0814 -0.2215 3.7535 44 1 4.7010 0.5305 3.3608 45 1 4.9124 -1.2344 3.2594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744431521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:29 Heat of formation + Delta-G solvation = 79.489269 kcal Electronic energy + Delta-G solvation = -27123.832409 eV Core-core repulsion = 23428.089708 eV Total energy + Delta-G solvation = -3695.742701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.26515 -38.48700 -37.38718 -35.47825 -33.74722 -32.79489 -31.88657 -30.39413 -30.25224 -29.99795 -26.92908 -25.88882 -24.08357 -23.65339 -22.29644 -21.97133 -20.89501 -19.34120 -18.36673 -17.85230 -17.00875 -16.42794 -15.91284 -15.59317 -15.39252 -15.16819 -15.09269 -14.89280 -14.43510 -14.34160 -13.99083 -13.72447 -13.34644 -13.19957 -13.00384 -12.83409 -12.69742 -12.11107 -12.02351 -11.85216 -11.67455 -11.48124 -11.31605 -11.24111 -11.22288 -11.00936 -10.78931 -10.47112 -10.31042 -10.29120 -9.82151 -9.54792 -9.48781 -8.76997 -8.73463 -8.42031 -8.30315 -8.21519 -6.58495 -6.49458 -4.21433 1.55261 1.93965 2.50090 2.57356 3.07007 3.09563 3.16433 3.18215 3.35272 3.38526 3.65512 4.01630 4.22523 4.35166 4.67257 4.74470 4.84400 4.91441 4.92803 5.07220 5.14732 5.17979 5.21079 5.31906 5.32726 5.37338 5.46835 5.55696 5.58494 5.67552 5.68993 5.77795 5.78257 5.81571 5.95101 6.02723 6.09346 6.32978 6.52779 6.68420 6.76458 6.81257 6.83435 6.99150 7.09532 7.34342 7.40752 7.54238 7.72939 8.12781 8.67432 8.96335 10.54607 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.002806 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.822921 B = 9977.561799 C =10509.605054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.183 4.183 3 C -0.011 4.011 4 C 0.060 3.940 5 N -0.538 5.538 6 C 0.034 3.966 7 C 0.085 3.915 8 N -0.616 5.616 9 C 0.564 3.436 10 O -0.513 6.513 11 C -0.167 4.167 12 C -0.082 4.082 13 C -0.183 4.183 14 C -0.078 4.078 15 C -0.152 4.152 16 C -0.049 4.049 17 S 0.134 5.866 18 C -0.579 4.579 19 H 0.093 0.907 20 C 0.081 3.919 21 N -0.858 5.858 22 Si 0.922 3.078 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.277 1.277 26 C 0.121 3.879 27 C 0.042 3.958 28 H 0.216 0.784 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.139 0.861 41 H 0.274 0.726 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.035 10.500 -13.411 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.184 4.184 3 C -0.048 4.048 4 C -0.068 4.068 5 N -0.263 5.263 6 C -0.095 4.095 7 C -0.037 4.037 8 N -0.352 5.352 9 C 0.354 3.646 10 O -0.389 6.389 11 C -0.181 4.181 12 C -0.101 4.101 13 C -0.207 4.207 14 C -0.100 4.100 15 C -0.177 4.177 16 C -0.168 4.168 17 S 0.396 5.604 18 C -0.725 4.725 19 H 0.111 0.889 20 C -0.130 4.130 21 N -0.491 5.491 22 Si 0.747 3.253 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.002 4.002 27 C -0.087 4.087 28 H 0.233 0.767 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.756 11.710 -11.491 20.183 hybrid contribution -0.072 -2.708 -0.664 2.789 sum -11.828 9.002 -12.155 19.201 Atomic orbital electron populations 1.24911 0.95983 1.01522 1.00550 1.23095 0.94511 1.00162 1.00621 1.18725 0.84201 1.03979 0.97874 1.22006 0.87410 1.01083 0.96259 1.61969 1.06640 1.43998 1.13649 1.22641 0.95857 0.92220 0.98756 1.22705 0.92165 1.04119 0.84760 1.47965 1.35171 1.37134 1.14894 1.18347 0.79241 0.80900 0.86094 1.90806 1.56113 1.69630 1.22346 1.19118 1.10869 0.95086 0.93067 1.21282 0.97818 0.98856 0.92164 1.20684 1.06424 0.94878 0.98736 1.21100 0.97314 0.96765 0.94809 1.21435 1.03152 1.00075 0.93049 1.22949 0.96119 0.94332 1.03400 1.84358 1.74672 1.10339 0.91025 1.23770 1.55828 0.96472 0.96470 0.88948 1.25116 0.93520 0.99832 0.94524 1.69984 1.44017 1.36785 0.98286 0.86053 0.78451 0.81972 0.78795 1.19121 1.20171 1.20240 1.21581 0.91204 0.91330 0.96103 1.22509 0.95758 1.01467 0.88918 0.76709 0.89407 0.88587 0.90279 0.94304 0.93867 0.89505 0.90883 0.86170 0.85294 0.86861 0.86941 0.84341 0.91567 0.91169 0.88468 0.89626 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.73 19.25 29.55 0.57 -1.16 16 2 C -0.18 -1.66 13.34 -37.13 -0.50 -2.16 16 3 C -0.01 -0.09 5.63 -29.52 -0.17 -0.25 16 4 C 0.06 0.53 4.92 -3.83 -0.02 0.51 16 5 N -0.54 -5.37 4.63 -234.32 -1.08 -6.46 16 6 C 0.03 0.35 5.46 -3.70 -0.02 0.33 16 7 C 0.09 0.98 5.12 -3.60 -0.02 0.96 16 8 N -0.62 -9.29 3.01 -173.73 -0.52 -9.82 16 9 C 0.56 11.07 7.13 -12.52 -0.09 10.98 16 10 O -0.51 -12.04 14.37 5.27 0.08 -11.96 16 11 C -0.17 -3.27 5.53 -104.75 -0.58 -3.85 16 12 C -0.08 -1.26 7.43 -39.20 -0.29 -1.55 16 13 C -0.18 -2.68 10.02 -39.58 -0.40 -3.08 16 14 C -0.08 -1.29 10.03 -39.54 -0.40 -1.69 16 15 C -0.15 -3.11 9.21 -39.38 -0.36 -3.48 16 16 C -0.05 -1.11 6.13 -38.40 -0.24 -1.34 16 17 S 0.13 3.57 19.20 -107.50 -2.06 1.51 16 18 C -0.58 -15.83 8.99 30.94 0.28 -15.55 16 19 H 0.09 2.39 5.00 -52.49 -0.26 2.13 16 20 C 0.08 2.21 5.49 -17.46 -0.10 2.11 16 21 N -0.86 -24.66 13.22 55.49 0.73 -23.93 16 22 Si 0.92 20.55 29.55 -169.99 -5.02 15.53 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.12 1.59 6.58 -3.60 -0.02 1.57 16 27 C 0.04 0.47 5.62 -3.70 -0.02 0.45 16 28 H 0.22 1.04 7.80 -54.09 -0.42 0.62 16 29 H 0.09 0.63 6.40 -51.93 -0.33 0.29 16 30 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.08 0.66 7.97 -51.93 -0.41 0.25 16 32 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.69 6.16 -51.93 -0.32 0.37 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.12 1.42 3.63 -52.03 -0.19 1.23 16 37 H 0.13 1.56 5.44 -52.49 -0.29 1.27 16 38 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.14 2.98 5.06 -52.49 -0.27 2.71 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 1.46 7.10 -51.93 -0.37 1.09 16 44 H 0.09 0.79 7.99 -51.93 -0.41 0.37 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -32.57 377.00 -10.36 -42.93 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.79 Total: 3.71 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.36 Total: -17.20 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: -0.87 Total: -40.20 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.06 Total: 1.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.57 -10.36 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744431521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.421 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds