Wall clock time and date at job start Wed Apr 1 2020 02:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38077 * 120.02992 * 2 1 4 4 C 1.38504 * 120.05372 * 179.97438 * 3 2 1 5 5 F 1.35101 * 119.94456 * 180.02562 * 4 3 2 6 6 C 1.38548 * 120.10997 * 0.02562 * 4 3 2 7 7 C 1.38038 * 120.05517 * 359.70076 * 6 4 3 8 8 C 1.38966 * 120.02508 * 179.97438 * 2 1 3 9 9 N 1.39741 * 120.05516 * 359.97438 * 8 2 1 10 10 C 1.36874 * 120.00118 * 89.99853 * 9 8 2 11 11 H 1.08003 * 119.99590 * 185.33894 * 10 9 8 12 12 C 1.38987 * 119.99933 * 5.34683 * 10 9 8 13 13 N 1.31372 * 119.99669 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99993 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46974 * 89.99474 * 14 12 10 16 16 H 1.48492 * 109.46913 * 209.99632 * 14 12 10 17 17 H 1.48501 * 109.46781 * 330.00048 * 14 12 10 18 18 C 1.34780 * 120.00045 * 270.00615 * 9 8 2 19 19 O 1.21594 * 120.00185 * 184.98990 * 18 9 8 20 20 C 1.47639 * 119.99965 * 4.98039 * 18 9 8 21 21 C 1.39557 * 120.01566 * 174.38469 * 20 18 9 22 22 N 1.31993 * 119.97128 * 179.97438 * 21 20 18 23 23 C 1.32807 * 120.00173 * 0.02562 * 22 21 20 24 24 N 1.38429 * 119.98301 * 179.97438 * 23 22 21 25 25 C 1.46499 * 119.99684 * 184.99979 * 24 23 22 26 26 C 1.46499 * 120.00232 * 4.72817 * 24 23 22 27 27 C 1.39828 * 120.02964 * 0.27337 * 23 22 21 28 28 N 1.31500 * 120.02638 * 359.43287 * 27 23 22 29 29 H 1.09005 * 109.47189 * 270.02359 * 1 2 3 30 30 H 1.09003 * 109.46857 * 30.01402 * 1 2 3 31 31 H 1.08996 * 109.47470 * 150.01919 * 1 2 3 32 32 H 1.07997 * 119.97288 * 359.96078 * 3 2 1 33 33 H 1.07997 * 119.96704 * 179.97438 * 6 4 3 34 34 H 1.07995 * 120.02841 * 180.30019 * 7 6 4 35 35 H 0.97001 * 119.99231 * 180.02562 * 13 12 10 36 36 H 1.08007 * 120.01511 * 0.02562 * 21 20 18 37 37 H 1.09002 * 109.47510 * 269.72768 * 25 24 23 38 38 H 1.09001 * 109.47640 * 29.72774 * 25 24 23 39 39 H 1.09000 * 109.47379 * 149.72330 * 25 24 23 40 40 H 1.09008 * 109.46838 * 270.27401 * 26 24 23 41 41 H 1.08988 * 109.47276 * 30.27143 * 26 24 23 42 42 H 1.09003 * 109.47279 * 150.27804 * 26 24 23 43 43 H 1.08004 * 119.98808 * 179.70586 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1954 0.0000 4 6 3.5830 1.1960 0.0005 5 9 4.2569 2.3669 0.0011 6 6 4.2785 -0.0022 0.0005 7 6 3.5923 -1.1999 0.0062 8 6 2.2023 -1.2032 0.0005 9 7 1.5053 -2.4143 0.0016 10 6 1.1634 -3.0083 -1.1832 11 1 0.5511 -3.8979 -1.1843 12 6 1.6045 -2.4667 -2.3848 13 7 2.3491 -1.3843 -2.3833 14 14 1.1386 -3.2777 -4.0018 15 1 -0.1371 -2.6999 -4.4957 16 1 2.2101 -3.0393 -5.0018 17 1 0.9723 -4.7385 -3.7929 18 6 1.1695 -2.9976 1.1694 19 8 0.6441 -4.0942 1.1723 20 6 1.4398 -2.3051 2.4450 21 6 0.9880 -2.8532 3.6463 22 7 1.2305 -2.2336 4.7862 23 6 1.9039 -1.0889 4.7897 24 7 2.1576 -0.4392 5.9854 25 6 2.8031 0.8759 5.9818 26 6 1.7752 -1.0640 7.2541 27 6 2.3511 -0.5365 3.5855 28 7 2.1151 -1.1557 2.4497 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6580 2.1307 -0.0006 33 1 5.3585 0.0009 0.0005 34 1 4.1349 -2.1337 0.0111 35 1 2.6566 -1.0062 -3.2220 36 1 0.4408 -3.7844 3.6432 37 1 3.8844 0.7501 6.0359 38 1 2.5444 1.4052 5.0647 39 1 2.4607 1.4511 6.8420 40 1 0.7590 -0.7669 7.5137 41 1 1.8223 -2.1482 7.1539 42 1 2.4597 -0.7415 8.0388 43 1 2.8945 0.3969 3.5887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906082821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:11 Heat of formation + Delta-G solvation = 37.980206 kcal Electronic energy + Delta-G solvation = -31252.331719 eV Core-core repulsion = 27020.868625 eV Total energy + Delta-G solvation = -4231.463094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.139 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.01273 -40.84028 -39.33224 -37.39233 -36.67077 -34.57163 -33.71716 -31.96823 -31.60969 -30.43885 -28.50028 -28.49145 -26.45688 -26.09887 -24.77504 -23.75194 -22.41162 -21.81857 -20.82568 -19.80886 -17.88107 -17.56408 -17.34568 -16.34742 -16.24747 -15.74394 -15.50256 -15.17068 -14.72561 -14.69630 -14.42749 -14.19893 -14.08741 -13.93719 -13.31727 -13.25266 -12.84775 -12.74834 -12.63753 -12.42367 -12.41410 -12.33442 -12.11977 -11.96005 -11.57480 -11.27402 -11.20569 -11.03393 -10.89227 -10.55962 -10.45343 -10.31650 -10.24511 -9.82059 -9.43851 -9.11449 -8.59403 -8.15480 -7.79303 -7.57346 -7.44871 -6.11321 -4.00540 1.11031 1.56523 2.33863 2.40354 2.80779 3.09286 3.18862 3.23302 3.58284 3.95493 4.42778 4.46455 4.56452 4.63963 4.78032 4.80756 5.00679 5.09602 5.13755 5.17974 5.23562 5.45098 5.48403 5.54009 5.60095 5.69888 5.73513 5.75954 5.89285 6.03976 6.27081 6.35388 6.44769 6.48286 6.68496 6.72888 6.90315 7.05783 7.15349 7.19020 7.30030 7.38012 7.69950 7.76525 7.78581 7.97086 8.19554 8.36429 8.94778 9.21801 9.72540 10.51105 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.004854 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.860546 B = 5766.876595 C = 7413.740774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.043 4.043 3 C -0.144 4.144 4 C 0.060 3.940 5 F -0.163 7.163 6 C -0.146 4.146 7 C -0.053 4.053 8 C 0.275 3.725 9 N -0.389 5.389 10 C -0.307 4.307 11 H 0.114 0.886 12 C 0.033 3.967 13 N -0.850 5.850 14 Si 0.933 3.067 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.267 1.267 18 C 0.498 3.502 19 O -0.580 6.580 20 C -0.011 4.011 21 C 0.146 3.854 22 N -0.507 5.507 23 C 0.346 3.654 24 N -0.610 5.610 25 C 0.093 3.907 26 C 0.100 3.900 27 C -0.003 4.003 28 N -0.366 5.366 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.275 0.725 36 H 0.176 0.824 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.635 6.563 12.131 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.045 4.045 3 C -0.164 4.164 4 C 0.041 3.959 5 F -0.142 7.142 6 C -0.166 4.166 7 C -0.073 4.073 8 C 0.183 3.817 9 N -0.102 5.102 10 C -0.434 4.434 11 H 0.132 0.868 12 C -0.174 4.174 13 N -0.486 5.486 14 Si 0.759 3.241 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.192 1.192 18 C 0.287 3.713 19 O -0.465 6.465 20 C -0.152 4.152 21 C -0.016 4.016 22 N -0.229 5.229 23 C 0.108 3.892 24 N -0.325 5.325 25 C -0.050 4.050 26 C -0.043 4.043 27 C -0.174 4.174 28 N -0.081 5.081 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.193 0.807 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.513 6.218 12.061 13.653 hybrid contribution 0.139 0.146 -0.910 0.933 sum 1.652 6.364 11.150 12.945 Atomic orbital electron populations 1.20607 0.92364 1.02704 1.00418 1.19234 0.94853 0.91498 0.98950 1.20337 0.91833 0.97566 1.06660 1.17323 0.89909 0.80288 1.08371 1.91362 1.80848 1.47132 1.94894 1.20431 0.98649 0.91254 1.06266 1.20443 0.93156 0.96135 0.97570 1.16655 0.89793 0.84375 0.90924 1.41202 1.46243 1.17348 1.05437 1.19937 1.31032 1.11461 0.80984 0.86805 1.25409 0.95861 0.96121 0.99973 1.69862 1.31968 1.18940 1.27867 0.85794 0.78212 0.79698 0.80381 1.20136 1.20674 1.19175 1.17031 0.86241 0.86354 0.81641 1.90634 1.49558 1.20336 1.85932 1.22123 1.02190 0.94472 0.96439 1.23369 0.93736 0.98361 0.86120 1.67997 1.16648 1.08513 1.29791 1.19521 0.91828 0.90570 0.87302 1.46007 1.64084 1.19284 1.03086 1.21749 0.97245 0.82713 1.03268 1.21556 0.99317 0.99532 0.83865 1.23217 1.04770 1.02391 0.87021 1.68801 1.06895 1.05454 1.26975 0.93231 0.92901 0.90449 0.87095 0.87069 0.87596 0.91308 0.80737 0.92626 0.90772 0.90946 0.93408 0.90493 0.91876 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 9.77 36.00 0.35 -1.72 16 2 C -0.04 -0.92 4.31 -104.41 -0.45 -1.37 16 3 C -0.14 -2.83 9.67 -39.54 -0.38 -3.22 16 4 C 0.06 1.18 7.30 -39.37 -0.29 0.89 16 5 F -0.16 -3.05 17.27 2.25 0.04 -3.01 16 6 C -0.15 -2.89 10.02 -39.54 -0.40 -3.29 16 7 C -0.05 -1.16 7.96 -39.37 -0.31 -1.47 16 8 C 0.27 6.21 0.63 -83.70 -0.05 6.15 16 9 N -0.39 -9.54 1.78 -60.04 -0.11 -9.65 16 10 C -0.31 -7.93 8.88 -15.02 -0.13 -8.07 16 11 H 0.11 3.05 7.19 -52.48 -0.38 2.67 16 12 C 0.03 0.80 5.44 -17.47 -0.10 0.70 16 13 N -0.85 -20.97 9.35 55.50 0.52 -20.45 16 14 Si 0.93 19.63 29.55 -169.99 -5.02 14.61 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 C 0.50 11.97 7.56 -12.42 -0.09 11.87 16 19 O -0.58 -15.15 15.94 5.28 0.08 -15.07 16 20 C -0.01 -0.23 6.65 -82.89 -0.55 -0.78 16 21 C 0.15 2.66 10.76 -16.99 -0.18 2.47 16 22 N -0.51 -8.40 9.30 -11.93 -0.11 -8.51 16 23 C 0.35 5.20 7.36 -154.97 -1.14 4.06 16 24 N -0.61 -7.01 3.37 -189.51 -0.64 -7.65 16 25 C 0.09 0.75 10.07 59.85 0.60 1.35 16 26 C 0.10 0.95 10.42 59.85 0.62 1.57 16 27 C 0.00 -0.05 10.34 -17.10 -0.18 -0.23 16 28 N -0.37 -6.97 6.04 -9.46 -0.06 -7.03 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 31 H 0.08 1.73 6.92 -51.93 -0.36 1.37 16 32 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 35 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.18 3.02 7.65 -52.48 -0.40 2.62 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.60 6.36 -51.93 -0.33 0.27 16 39 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 40 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.08 0.83 7.46 -51.94 -0.39 0.44 16 42 H 0.06 0.43 8.07 -51.93 -0.42 0.02 16 43 H 0.16 2.15 6.25 -52.48 -0.33 1.82 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -29.36 364.04 -7.60 -36.96 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.11 Total: 5.38 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -2.68 Total: 8.93 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.40 Total: -53.29 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.08 Total: -15.07 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.36 -7.60 -36.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906082821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.942 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds