Wall clock time and date at job start Wed Apr 1 2020 02:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46904 * 109.47020 * 60.67748 * 3 2 1 5 5 C 1.46847 * 111.00013 * 66.04095 * 4 3 2 6 6 C 1.53043 * 109.51423 * 185.84566 * 5 4 3 7 7 C 1.53126 * 109.27764 * 300.80744 * 6 5 4 8 8 C 1.53118 * 109.15134 * 57.66680 * 7 6 5 9 9 H 1.09001 * 109.50173 * 62.28109 * 8 7 6 10 10 N 1.46503 * 109.50068 * 182.39858 * 8 7 6 11 11 C 1.34777 * 119.99876 * 274.80585 * 10 8 7 12 12 O 1.21607 * 120.00110 * 359.97438 * 11 10 8 13 13 C 1.47426 * 119.99796 * 180.02562 * 11 10 8 14 14 C 1.39684 * 120.21545 * 0.02562 * 13 11 10 15 15 C 1.37807 * 119.93698 * 180.02562 * 14 13 11 16 16 C 1.38660 * 120.38405 * 359.97438 * 15 14 13 17 17 C 1.37910 * 120.43734 * 0.02642 * 16 15 14 18 18 C 1.39116 * 120.04741 * 359.71467 * 17 16 15 19 19 S 1.76208 * 120.18791 * 180.27924 * 18 17 16 20 20 C 1.76204 * 100.00014 * 6.86823 * 19 18 17 21 21 H 1.08003 * 119.99643 * 5.66041 * 20 19 18 22 22 C 1.38804 * 119.99941 * 185.65870 * 20 19 18 23 23 N 1.31553 * 119.99628 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99903 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47164 * 90.00434 * 24 22 20 26 26 H 1.48509 * 109.46939 * 209.99962 * 24 22 20 27 27 H 1.48498 * 109.47503 * 329.99812 * 24 22 20 28 28 C 1.46846 * 111.00029 * 190.25270 * 4 3 2 29 29 H 4.40885 * 5.52131 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47565 * 300.67612 * 3 2 1 31 31 H 1.09001 * 109.46641 * 180.66952 * 3 2 1 32 32 H 1.09001 * 109.46427 * 305.85663 * 5 4 3 33 33 H 1.09005 * 109.46205 * 65.83662 * 5 4 3 34 34 H 1.08992 * 109.50146 * 60.75789 * 6 5 4 35 35 H 1.08995 * 109.50196 * 180.87821 * 6 5 4 36 36 H 1.09006 * 109.52667 * 297.76585 * 7 6 5 37 37 H 1.08993 * 109.57086 * 177.60563 * 7 6 5 38 38 H 0.97001 * 119.99578 * 94.80895 * 10 8 7 39 39 H 1.07997 * 120.02847 * 359.97438 * 14 13 11 40 40 H 1.08000 * 119.80469 * 179.97438 * 15 14 13 41 41 H 1.08002 * 119.77848 * 179.97438 * 16 15 14 42 42 H 1.07999 * 119.97453 * 180.02562 * 17 16 15 43 43 H 0.97000 * 119.99811 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.46331 * 294.18031 * 28 4 3 45 45 H 1.09000 * 109.45771 * 54.14162 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.6774 -1.2076 5 6 2.7862 0.0809 -2.4155 6 6 3.1817 -0.7231 -3.6562 7 6 4.6878 -0.9976 -3.6218 8 6 5.0326 -1.7456 -2.3310 9 1 4.5194 -2.7072 -2.3194 10 7 6.4800 -1.9619 -2.2629 11 6 7.0310 -3.0305 -2.8719 12 8 6.3268 -3.8154 -3.4775 13 6 8.4875 -3.2485 -2.8028 14 6 9.3004 -2.3506 -2.1070 15 6 10.6612 -2.5596 -2.0466 16 6 11.2305 -3.6580 -2.6728 17 6 10.4427 -4.5543 -3.3640 18 6 9.0663 -4.3638 -3.4320 19 16 8.0553 -5.5107 -4.3079 20 6 9.2526 -6.7465 -4.6873 21 1 10.2538 -6.6684 -4.2899 22 6 8.9090 -7.8205 -5.4968 23 7 9.8028 -8.7433 -5.7796 24 14 7.1771 -7.9559 -6.1834 25 1 7.1095 -7.2649 -7.4961 26 1 6.8250 -9.3879 -6.3592 27 1 6.2200 -7.3230 -5.2408 28 6 4.5834 -0.9123 -1.1286 29 1 -1.0499 0.0001 -0.0002 30 1 3.0097 -0.5234 0.8838 31 1 3.0088 1.0285 0.0120 32 1 1.7121 0.2659 -2.4298 33 1 3.3186 1.0320 -2.4141 34 1 2.6395 -1.6685 -3.6653 35 1 2.9363 -0.1534 -4.5524 36 1 5.2311 -0.0531 -3.6517 37 1 4.9677 -1.6063 -4.4815 38 1 7.0416 -1.3360 -1.7794 39 1 8.8630 -1.4930 -1.6176 40 1 11.2878 -1.8638 -1.5085 41 1 12.2982 -3.8121 -2.6195 42 1 10.8939 -5.4075 -3.8486 43 1 9.5629 -9.4936 -6.3456 44 1 5.1072 0.0436 -1.1331 45 1 4.8145 -1.4486 -0.2083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923591321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:31 Heat of formation + Delta-G solvation = 53.926515 kcal Electronic energy + Delta-G solvation = -26750.379292 eV Core-core repulsion = 23053.528107 eV Total energy + Delta-G solvation = -3696.851185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.12554 -38.97235 -37.51416 -35.31586 -33.60718 -32.70888 -32.26709 -31.07059 -30.38488 -29.21597 -27.31583 -25.90359 -24.05737 -23.35683 -22.50029 -21.95326 -20.24862 -20.05535 -18.57151 -18.19995 -17.15701 -16.55273 -15.99272 -15.62056 -15.43054 -15.20613 -14.93280 -14.74889 -14.47289 -14.22749 -13.92711 -13.77376 -13.70554 -13.27005 -13.17389 -13.08144 -12.64088 -12.51537 -12.10146 -11.89038 -11.56382 -11.30113 -11.17996 -11.17163 -11.01639 -10.90503 -10.80389 -10.60839 -10.50667 -10.45171 -9.78797 -9.69472 -9.45520 -8.90597 -8.83908 -8.72847 -8.42638 -8.22009 -6.80102 -6.47706 -4.18843 1.41446 1.91003 2.34774 2.55254 2.87288 3.21261 3.24813 3.37813 3.40350 3.47954 3.85853 4.07171 4.15710 4.37403 4.52293 4.64493 4.68507 4.78607 4.87448 4.95553 5.00918 5.06515 5.14692 5.20438 5.23462 5.27355 5.42875 5.48163 5.51737 5.63064 5.64292 5.77251 5.82076 5.95188 6.04951 6.16992 6.22549 6.26451 6.49217 6.54365 6.63641 6.73212 6.78681 6.95861 7.05436 7.32444 7.44953 7.75618 7.78700 8.34605 8.66393 8.96478 10.59493 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.002873 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.817707 B = 9743.746484 C =11376.368069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.180 4.180 3 C 0.164 3.836 4 N -0.532 5.532 5 C 0.054 3.946 6 C -0.114 4.114 7 C -0.132 4.132 8 C 0.153 3.847 9 H 0.099 0.901 10 N -0.734 5.734 11 C 0.557 3.443 12 O -0.509 6.509 13 C -0.172 4.172 14 C -0.065 4.065 15 C -0.178 4.178 16 C -0.077 4.077 17 C -0.144 4.144 18 C -0.031 4.031 19 S 0.088 5.912 20 C -0.580 4.580 21 H 0.106 0.894 22 C 0.103 3.897 23 N -0.863 5.863 24 Si 0.849 3.151 25 H -0.263 1.263 26 H -0.269 1.269 27 H -0.233 1.233 28 C 0.052 3.948 29 H 0.217 0.783 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.394 0.606 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.146 0.854 43 H 0.275 0.725 44 H 0.040 0.960 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 20.434 10.352 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.180 4.180 3 C 0.037 3.963 4 N -0.257 5.257 5 C -0.073 4.073 6 C -0.152 4.152 7 C -0.171 4.171 8 C 0.048 3.952 9 H 0.117 0.883 10 N -0.387 5.387 11 C 0.346 3.654 12 O -0.386 6.386 13 C -0.187 4.187 14 C -0.085 4.085 15 C -0.202 4.202 16 C -0.099 4.099 17 C -0.169 4.169 18 C -0.150 4.150 19 S 0.349 5.651 20 C -0.726 4.726 21 H 0.123 0.877 22 C -0.108 4.108 23 N -0.496 5.496 24 Si 0.673 3.327 25 H -0.188 1.188 26 H -0.194 1.194 27 H -0.157 1.157 28 C -0.076 4.076 29 H 0.234 0.766 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.228 0.772 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.547 18.928 9.293 24.537 hybrid contribution 1.380 0.851 0.252 1.641 sum -11.166 19.778 9.545 24.637 Atomic orbital electron populations 1.24899 0.95903 1.00971 0.99722 1.22779 0.94133 1.00232 1.00866 1.18975 0.85310 0.98000 0.94001 1.61738 1.13665 1.48521 1.01754 1.22188 1.00955 0.94528 0.89638 1.21544 0.96118 1.01120 0.96464 1.22010 0.95755 1.00420 0.98944 1.20764 0.81075 1.00109 0.93287 0.88314 1.45821 1.07548 1.28066 1.57296 1.18254 0.87860 0.80453 0.78819 1.90766 1.62498 1.43858 1.41432 1.19164 0.92032 0.99364 1.08120 1.20890 0.93849 0.96952 0.96833 1.20717 0.94593 0.99836 1.05022 1.21141 0.99214 0.93914 0.95585 1.21580 0.92523 1.01248 1.01562 1.22536 0.97355 0.96854 0.98225 1.84134 1.11329 1.12443 1.57169 1.23536 1.02130 1.09932 1.36998 0.87677 1.24805 0.97740 0.94216 0.94027 1.69910 1.34207 1.11052 1.34454 0.86877 0.84788 0.79193 0.81811 1.18759 1.19385 1.15732 1.22284 0.86940 0.98994 0.99397 0.76622 0.88258 0.92382 0.90514 0.94659 0.90629 0.91112 0.92207 0.90574 0.77159 0.86992 0.86823 0.86634 0.83632 0.91531 0.94139 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.58 19.25 29.55 0.57 -1.01 16 2 C -0.18 -1.63 12.36 -37.12 -0.46 -2.09 16 3 C 0.16 1.27 5.46 -6.61 -0.04 1.24 16 4 N -0.53 -4.95 4.63 -238.17 -1.10 -6.05 16 5 C 0.05 0.48 5.30 -3.83 -0.02 0.46 16 6 C -0.11 -1.11 6.09 -26.64 -0.16 -1.27 16 7 C -0.13 -1.50 5.58 -26.61 -0.15 -1.65 16 8 C 0.15 1.81 2.62 -67.85 -0.18 1.63 16 9 H 0.10 1.47 7.58 -51.93 -0.39 1.07 16 10 N -0.73 -9.41 5.03 -54.80 -0.28 -9.68 16 11 C 0.56 9.98 7.72 -12.52 -0.10 9.89 16 12 O -0.51 -11.07 13.43 5.27 0.07 -10.99 16 13 C -0.17 -3.20 5.89 -104.75 -0.62 -3.82 16 14 C -0.07 -0.95 9.53 -39.20 -0.37 -1.33 16 15 C -0.18 -2.58 10.02 -39.58 -0.40 -2.98 16 16 C -0.08 -1.27 10.03 -39.55 -0.40 -1.67 16 17 C -0.14 -2.99 9.22 -39.38 -0.36 -3.35 16 18 C -0.03 -0.68 6.15 -38.39 -0.24 -0.91 16 19 S 0.09 2.23 16.53 -107.50 -1.78 0.46 16 20 C -0.58 -16.28 9.54 30.94 0.30 -15.98 16 21 H 0.11 3.04 5.21 -52.48 -0.27 2.77 16 22 C 0.10 2.92 5.50 -17.46 -0.10 2.83 16 23 N -0.86 -25.18 13.96 55.49 0.77 -24.40 16 24 Si 0.85 20.98 27.74 -169.99 -4.71 16.26 16 25 H -0.26 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.23 -5.79 6.74 56.52 0.38 -5.40 16 28 C 0.05 0.46 4.93 -3.84 -0.02 0.44 16 29 H 0.22 1.02 7.80 -54.10 -0.42 0.60 16 30 H 0.10 0.67 7.98 -51.93 -0.41 0.25 16 31 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 32 H 0.08 0.68 7.12 -51.93 -0.37 0.31 16 33 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.39 3.87 6.63 -40.82 -0.27 3.60 16 39 H 0.11 1.18 6.40 -52.49 -0.34 0.84 16 40 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.15 3.29 5.04 -52.49 -0.26 3.03 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.71 8.01 -51.93 -0.42 0.29 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -32.47 380.63 -10.14 -42.62 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.12 Total: 5.63 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.73 Total: -19.57 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: -0.60 Total: -40.14 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -10.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.71 Total: 16.26 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.78 Total: 0.46 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.47 -10.14 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923591321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.542 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds