Wall clock time and date at job start Wed Apr 1 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 120.00120 * 2 1 4 4 H 1.48502 * 109.46896 * 274.98829 * 3 2 1 5 5 H 1.48501 * 109.46951 * 34.98189 * 3 2 1 6 6 H 1.48492 * 109.47136 * 154.98368 * 3 2 1 7 7 C 1.38813 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00469 * 187.02689 * 7 2 1 9 9 N 1.36935 * 119.99748 * 7.02995 * 7 2 1 10 10 C 1.47292 * 125.79485 * 354.82496 * 9 7 2 11 11 C 1.54318 * 107.31103 * 178.92456 * 10 9 7 12 12 H 1.08999 * 110.72000 * 96.17802 * 11 10 9 13 13 O 1.42897 * 110.87628 * 219.38410 * 11 10 9 14 14 C 1.55159 * 102.94169 * 337.81949 * 11 10 9 15 15 H 1.09000 * 111.00363 * 277.42724 * 14 11 10 16 16 N 1.46503 * 111.04141 * 153.58977 * 14 11 10 17 17 C 1.34773 * 120.00070 * 161.33077 * 16 14 11 18 18 O 1.21545 * 120.00176 * 0.02562 * 17 16 14 19 19 C 1.47853 * 119.99728 * 180.02562 * 17 16 14 20 20 C 1.39584 * 120.52789 * 359.97438 * 19 17 16 21 21 N 1.31669 * 120.70480 * 179.97438 * 20 19 17 22 22 C 1.31884 * 121.95872 * 0.02562 * 21 20 19 23 23 C 1.38894 * 120.98650 * 359.97438 * 22 21 20 24 24 N 1.40291 * 120.41529 * 180.02562 * 23 22 21 25 25 C 1.36106 * 125.93672 * 4.71389 * 24 23 22 26 26 C 1.35375 * 106.04775 * 179.87928 * 25 24 23 27 27 N 1.33768 * 106.54151 * 0.37654 * 26 25 24 28 28 N 1.28613 * 109.05625 * 359.75530 * 27 26 25 29 29 C 1.38987 * 119.17606 * 359.74201 * 23 22 21 30 30 C 1.47424 * 125.65133 * 174.82743 * 9 7 2 31 31 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.85433 * 59.50077 * 10 9 7 33 33 H 1.09001 * 110.00331 * 298.43784 * 10 9 7 34 34 H 0.96700 * 114.00431 * 293.61002 * 13 11 10 35 35 H 0.96998 * 119.99356 * 341.32802 * 16 14 11 36 36 H 1.07995 * 119.64675 * 0.02562 * 20 19 17 37 37 H 1.08000 * 119.50759 * 179.97438 * 22 21 20 38 38 H 1.07997 * 126.97809 * 0.02562 * 25 24 23 39 39 H 1.08009 * 126.72924 * 180.12859 * 26 25 24 40 40 H 1.08002 * 120.88897 * 180.27573 * 29 23 22 41 41 H 1.08992 * 110.36982 * 85.26213 * 30 9 7 42 42 H 1.09001 * 110.36388 * 323.04655 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2056 0.1150 9 7 1.3334 -2.3836 -0.1441 10 6 -0.1305 -2.5364 -0.2012 11 6 -0.4282 -4.0378 -0.3971 12 1 -0.6363 -4.5177 0.5592 13 8 -1.5168 -4.2271 -1.3031 14 6 0.8930 -4.5775 -1.0060 15 1 0.9278 -4.4023 -2.0813 16 7 1.0696 -5.9998 -0.7026 17 6 1.9269 -6.7427 -1.4303 18 8 2.5540 -6.2325 -2.3379 19 6 2.1047 -8.1783 -1.1244 20 6 1.3905 -8.7753 -0.0843 21 7 1.5457 -10.0536 0.1908 22 6 2.3725 -10.8196 -0.4940 23 6 3.1207 -10.3041 -1.5445 24 7 3.9962 -11.1300 -2.2653 25 6 4.1443 -12.4730 -2.1013 26 6 5.0832 -12.8581 -2.9972 27 7 5.4641 -11.7535 -3.6484 28 7 4.8031 -10.7486 -3.1929 29 6 2.9868 -8.9612 -1.8767 30 6 1.9494 -3.7172 -0.2687 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5297 -1.9667 -1.0404 33 1 -0.5783 -2.1879 0.7295 34 1 -2.3662 -3.9065 -0.9700 35 1 0.5694 -6.4068 0.0220 36 1 0.7028 -8.1827 0.5006 37 1 2.4693 -11.8634 -0.2340 38 1 3.6177 -13.1038 -1.4005 39 1 5.4552 -13.8602 -3.1527 40 1 3.5517 -8.5325 -2.6913 41 1 2.1563 -4.1332 0.7172 42 1 2.8665 -3.6581 -0.8549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077448652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:28 Heat of formation + Delta-G solvation = 104.613968 kcal Electronic energy + Delta-G solvation = -28777.879470 eV Core-core repulsion = 24569.225795 eV Total energy + Delta-G solvation = -4208.653675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.138 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.92439 -41.16424 -39.54021 -37.90447 -35.68446 -35.16453 -34.29774 -33.10616 -31.84351 -31.59825 -30.79705 -28.51363 -27.23075 -25.59555 -25.23804 -24.32261 -23.01025 -22.30098 -21.11601 -20.64547 -20.30735 -19.26852 -17.71798 -17.57431 -17.30018 -17.02676 -16.75015 -16.56995 -15.72209 -15.50661 -15.22858 -14.87125 -14.72452 -14.31970 -14.17161 -14.07177 -13.81629 -13.27223 -13.21234 -12.75073 -12.59081 -12.24684 -12.14736 -11.96726 -11.63960 -11.57894 -11.33119 -10.96888 -10.85012 -10.74508 -10.38369 -10.20060 -10.01862 -9.97453 -9.96926 -9.91914 -9.47696 -9.43352 -9.03950 -8.68141 -6.97316 -5.82867 -3.16074 -0.27451 0.20852 1.34588 1.60182 2.08292 2.51918 2.87623 3.27986 3.37261 3.43144 3.44187 3.54000 3.67273 3.91920 4.04442 4.18850 4.33741 4.37910 4.51212 4.53648 4.62572 4.67280 4.93180 5.05532 5.32578 5.35206 5.37505 5.47942 5.54115 5.56845 5.63608 5.71167 5.96812 6.00593 6.12459 6.32864 6.53751 6.72734 7.01890 7.21916 7.38002 7.42490 7.68199 7.94817 8.01778 8.04746 8.12339 9.09102 9.69606 10.32365 11.29596 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.002147 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.289453 B =13036.287247 C =13872.813697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.082 0.918 9 N -0.599 5.599 10 C 0.152 3.848 11 C 0.069 3.931 12 H 0.059 0.941 13 O -0.563 6.563 14 C 0.138 3.862 15 H 0.107 0.893 16 N -0.704 5.704 17 C 0.560 3.440 18 O -0.518 6.518 19 C -0.154 4.154 20 C 0.142 3.858 21 N -0.458 5.458 22 C 0.130 3.870 23 C 0.063 3.937 24 N -0.241 5.241 25 C -0.049 4.049 26 C -0.041 4.041 27 N -0.258 5.258 28 N -0.072 5.072 29 C 0.001 3.999 30 C 0.130 3.870 31 H 0.254 0.746 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.378 0.622 35 H 0.397 0.603 36 H 0.174 0.826 37 H 0.172 0.828 38 H 0.198 0.802 39 H 0.198 0.802 40 H 0.169 0.831 41 H 0.024 0.976 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -26.587 1.812 26.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.026 3.974 11 C 0.009 3.991 12 H 0.077 0.923 13 O -0.368 6.368 14 C 0.034 3.966 15 H 0.125 0.875 16 N -0.355 5.355 17 C 0.344 3.656 18 O -0.394 6.394 19 C -0.160 4.160 20 C -0.016 4.016 21 N -0.166 5.166 22 C -0.031 4.031 23 C -0.031 4.031 24 N -0.029 5.029 25 C -0.197 4.197 26 C -0.196 4.196 27 N -0.125 5.125 28 N -0.050 5.050 29 C -0.027 4.027 30 C 0.002 3.998 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.225 0.775 35 H 0.232 0.768 36 H 0.191 0.809 37 H 0.189 0.811 38 H 0.215 0.785 39 H 0.215 0.785 40 H 0.187 0.813 41 H 0.042 0.958 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.147 -25.423 0.630 25.456 hybrid contribution -0.263 0.314 0.798 0.897 sum 0.884 -25.108 1.429 25.164 Atomic orbital electron populations 1.69920 1.04987 1.25336 1.56623 1.24841 0.95774 0.97821 1.01768 0.86071 0.78695 0.83211 0.77634 1.21434 1.21719 1.20522 1.19081 0.91265 0.82150 1.43319 0.90057 1.44290 1.01108 1.00951 1.86351 1.21880 0.85539 0.87998 1.01947 1.23435 0.85789 0.99139 0.90711 0.92313 1.86464 1.19236 1.85079 1.46033 1.22369 0.94901 0.77362 1.02000 0.87543 1.45830 1.43349 1.10915 1.35399 1.17760 0.80413 0.84775 0.82609 1.90856 1.45956 1.72543 1.30076 1.21080 1.00081 0.96046 0.98791 1.23268 0.94854 0.90811 0.92697 1.67865 1.16458 1.05777 1.26470 1.22841 0.90339 1.00817 0.89104 1.18633 0.96313 0.91290 0.96851 1.44645 1.26524 1.06717 1.25052 1.23901 1.05204 0.84292 1.06274 1.23731 0.98993 1.00201 0.96694 1.75189 1.19103 0.96553 1.21618 1.78523 1.02452 1.22002 1.02055 1.21603 0.93609 0.89976 0.97542 1.21853 0.95041 0.86333 0.96560 0.93585 0.91846 0.93325 0.77483 0.76813 0.80939 0.81133 0.78541 0.78525 0.81329 0.95833 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.21 10.38 55.49 0.58 -25.63 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 21.86 29.56 -169.99 -5.02 16.83 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.32 10.27 -15.06 -0.15 -6.47 16 8 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 9 N -0.60 -14.86 3.40 -169.86 -0.58 -15.44 16 10 C 0.15 3.44 5.17 -2.92 -0.02 3.42 16 11 C 0.07 1.18 3.95 -24.90 -0.10 1.08 16 12 H 0.06 0.84 8.00 -51.93 -0.42 0.43 16 13 O -0.56 -8.94 13.40 -35.23 -0.47 -9.41 16 14 C 0.14 2.42 3.04 -65.78 -0.20 2.22 16 15 H 0.11 2.17 7.73 -51.93 -0.40 1.77 16 16 N -0.70 -9.25 5.18 -52.66 -0.27 -9.52 16 17 C 0.56 7.84 7.78 -12.33 -0.10 7.75 16 18 O -0.52 -9.47 16.16 5.33 0.09 -9.39 16 19 C -0.15 -1.63 5.89 -104.84 -0.62 -2.24 16 20 C 0.14 1.15 10.71 -17.12 -0.18 0.96 16 21 N -0.46 -3.63 10.34 -12.77 -0.13 -3.76 16 22 C 0.13 0.86 10.62 -17.29 -0.18 0.68 16 23 C 0.06 0.56 6.69 -83.46 -0.56 0.00 16 24 N -0.24 -2.26 3.56 -10.41 -0.04 -2.30 16 25 C -0.05 -0.29 10.92 -16.68 -0.18 -0.48 16 26 C -0.04 -0.29 12.05 -17.73 -0.21 -0.51 16 27 N -0.26 -3.02 12.39 30.24 0.37 -2.64 16 28 N -0.07 -0.89 12.50 60.35 0.75 -0.14 16 29 C 0.00 0.01 9.28 -38.69 -0.36 -0.35 16 30 C 0.13 2.65 6.92 -2.53 -0.02 2.63 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.06 1.64 7.22 -51.93 -0.38 1.26 16 33 H 0.05 1.18 7.62 -51.93 -0.40 0.79 16 34 H 0.38 4.45 9.12 45.56 0.42 4.87 16 35 H 0.40 3.75 6.58 -40.82 -0.27 3.49 16 36 H 0.17 0.94 6.42 -52.49 -0.34 0.60 16 37 H 0.17 0.49 6.79 -52.49 -0.36 0.13 16 38 H 0.20 0.22 7.14 -52.49 -0.37 -0.15 16 39 H 0.20 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.17 2.07 7.46 -52.49 -0.39 1.68 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -36.49 361.53 -5.97 -42.45 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.71 Total: 5.05 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -2.97 Total: 8.45 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.68 Total: -59.43 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.39 Total: -18.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.49 -5.97 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077448652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.066 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds