Wall clock time and date at job start Wed Apr 1 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30534 * 125.96017 * 2 1 4 4 N 1.39947 * 108.85492 * 180.26081 * 3 2 1 5 5 C 1.46501 * 125.79654 * 179.71471 * 4 3 2 6 6 C 1.34599 * 108.40571 * 359.74356 * 4 3 2 7 7 C 1.37852 * 107.41027 * 359.97438 * 6 4 3 8 8 C 1.47555 * 126.38268 * 179.97438 * 7 6 4 9 9 N 1.29143 * 125.87576 * 180.02562 * 8 7 6 10 10 O 1.41388 * 112.86500 * 179.68740 * 9 8 7 11 11 C 1.44203 * 107.59709 * 17.49842 * 10 9 8 12 12 H 1.09002 * 111.00078 * 92.71585 * 11 10 9 13 13 C 1.50696 * 110.97291 * 216.46511 * 11 10 9 14 14 O 1.21299 * 120.00443 * 357.38052 * 13 11 10 15 15 N 1.34783 * 119.99945 * 177.37262 * 13 11 10 16 16 C 1.40590 * 120.00010 * 180.02562 * 15 13 11 17 17 C 1.40656 * 126.08445 * 359.97438 * 16 15 13 18 18 N 1.30904 * 108.38793 * 179.97438 * 17 16 15 19 19 N 1.40065 * 108.40957 * 359.97438 * 18 17 16 20 20 C 1.37325 * 126.07140 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99654 * 180.02562 * 20 19 18 22 22 C 1.38981 * 119.99678 * 0.02807 * 20 19 18 23 23 N 1.31291 * 120.00546 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99673 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47519 * 90.00164 * 24 22 20 26 26 H 1.48508 * 109.47264 * 209.99762 * 24 22 20 27 27 H 1.48503 * 109.47485 * 329.99582 * 24 22 20 28 28 C 1.35686 * 126.08374 * 180.28539 * 16 15 13 29 29 C 1.51693 * 125.86891 * 0.03366 * 8 7 6 30 30 H 1.08996 * 109.47241 * 270.16913 * 1 2 3 31 31 H 1.09000 * 109.47403 * 30.17016 * 1 2 3 32 32 H 1.09004 * 109.47625 * 150.16945 * 1 2 3 33 33 H 1.08999 * 109.47129 * 270.03039 * 5 4 3 34 34 H 1.08996 * 109.46819 * 30.02999 * 5 4 3 35 35 H 1.09001 * 109.47207 * 150.02981 * 5 4 3 36 36 H 1.08004 * 126.29356 * 180.02562 * 6 4 3 37 37 H 0.97000 * 119.99979 * 0.02562 * 15 13 11 38 38 H 1.08001 * 125.80230 * 0.02562 * 17 16 15 39 39 H 0.96998 * 120.00365 * 179.97438 * 23 22 20 40 40 H 1.07998 * 126.24303 * 359.97438 * 28 16 15 41 41 H 1.09008 * 110.79008 * 46.33098 * 29 8 7 42 42 H 1.09002 * 110.79219 * 282.86504 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0566 0.0000 4 7 3.6110 0.6450 -0.0060 5 6 4.7795 1.5286 -0.0139 6 6 3.6416 -0.7007 -0.0040 7 6 2.3360 -1.1429 0.0038 8 6 1.8881 -2.5488 0.0080 9 7 0.6613 -2.9523 0.0149 10 8 0.5464 -4.3615 0.0102 11 6 1.8203 -4.9041 0.4127 12 1 1.8499 -5.0747 1.4889 13 6 2.1284 -6.1726 -0.3402 14 8 1.3201 -6.6246 -1.1236 15 7 3.3023 -6.8050 -0.1433 16 6 3.5900 -7.9881 -0.8461 17 6 2.7504 -8.6221 -1.7797 18 7 3.3590 -9.6934 -2.2217 19 7 4.6063 -9.7855 -1.5911 20 6 5.5410 -10.7721 -1.7880 21 1 6.4750 -10.7468 -1.2464 22 6 5.2850 -11.8030 -2.6842 23 7 4.1493 -11.8339 -3.3423 24 14 6.5568 -13.1446 -2.9526 25 1 6.3174 -14.2527 -1.9935 26 1 6.4475 -13.6596 -4.3412 27 1 7.9165 -12.5881 -2.7367 28 6 4.7244 -8.7249 -0.7401 29 6 2.7895 -3.7689 0.0051 30 1 -0.3633 0.0030 1.0276 31 1 -0.3634 0.8884 -0.5165 32 1 -0.3634 -0.8915 -0.5112 33 1 5.0637 1.7461 -1.0435 34 1 4.5352 2.4584 0.4997 35 1 5.6089 1.0388 0.4962 36 1 4.5264 -1.3201 -0.0071 37 1 3.9486 -6.4438 0.4833 38 1 1.7706 -8.2822 -2.0813 39 1 3.9708 -12.5532 -3.9681 40 1 5.5687 -8.5090 -0.1021 41 1 3.5891 -3.6609 0.7381 42 1 3.1969 -3.9466 -0.9901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361921913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:38 Heat of formation + Delta-G solvation = 157.579273 kcal Electronic energy + Delta-G solvation = -28348.460990 eV Core-core repulsion = 24142.104063 eV Total energy + Delta-G solvation = -4206.356927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.138 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71188 -40.49140 -39.59797 -38.15185 -34.76496 -34.30801 -33.29788 -33.13243 -31.17845 -30.50458 -30.17591 -29.45327 -27.75408 -26.11776 -25.25073 -24.12658 -22.62689 -21.16317 -20.57458 -20.45671 -19.49439 -19.42612 -17.72961 -17.41230 -17.04527 -16.23243 -16.06227 -15.71550 -15.46503 -15.18494 -14.84802 -14.45055 -14.34392 -14.00110 -13.83660 -13.67684 -13.36918 -13.29091 -12.99006 -12.90452 -12.80827 -12.69833 -12.47767 -12.43691 -12.00585 -11.70621 -11.46305 -11.29303 -11.24318 -10.97718 -10.61198 -10.55381 -10.25370 -10.19681 -9.70308 -9.20404 -9.19036 -8.83288 -8.53804 -8.09042 -6.75734 -6.57869 -4.25815 0.92074 1.65092 1.92621 2.62828 2.71704 2.79027 2.98770 3.03501 3.08590 3.52549 3.63135 3.79429 3.84905 3.99393 4.27978 4.31639 4.41252 4.44794 4.60525 4.62401 4.63131 4.79541 4.88209 4.91360 4.99836 5.08542 5.14925 5.30100 5.42276 5.45187 5.60809 5.71043 5.76560 6.19753 6.25056 6.38926 6.40596 6.83292 6.91646 7.04960 7.19168 7.20544 7.33757 7.82877 8.09261 8.23077 8.57843 8.76867 9.34720 9.63951 10.38013 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.001965 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.757198 B =14249.191119 C =15215.952866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.118 3.882 3 N -0.300 5.300 4 N -0.364 5.364 5 C 0.098 3.902 6 C 0.102 3.898 7 C -0.197 4.197 8 C 0.168 3.832 9 N -0.294 5.294 10 O -0.164 6.164 11 C 0.033 3.967 12 H 0.110 0.890 13 C 0.502 3.498 14 O -0.508 6.508 15 N -0.618 5.618 16 C -0.062 4.062 17 C -0.032 4.032 18 N -0.260 5.260 19 N -0.142 5.142 20 C -0.323 4.323 21 H 0.117 0.883 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.935 3.065 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.264 1.264 28 C -0.083 4.083 29 C -0.139 4.139 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.187 0.813 37 H 0.397 0.603 38 H 0.176 0.824 39 H 0.275 0.725 40 H 0.146 0.854 41 H 0.109 0.891 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 23.611 9.607 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 N -0.122 5.122 4 N -0.142 5.142 5 C -0.043 4.043 6 C -0.051 4.051 7 C -0.210 4.210 8 C -0.022 4.022 9 N -0.035 5.035 10 O -0.182 6.182 11 C -0.030 4.030 12 H 0.127 0.873 13 C 0.285 3.715 14 O -0.383 6.383 15 N -0.262 5.262 16 C -0.167 4.167 17 C -0.207 4.207 18 N -0.091 5.091 19 N 0.091 4.909 20 C -0.455 4.455 21 H 0.134 0.866 22 C -0.172 4.172 23 N -0.395 5.395 24 Si 0.759 3.241 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.188 1.188 28 C -0.234 4.234 29 C -0.179 4.179 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.204 0.796 37 H 0.230 0.770 38 H 0.193 0.807 39 H 0.086 0.914 40 H 0.163 0.837 41 H 0.127 0.873 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.981 23.654 8.017 25.153 hybrid contribution 2.125 -0.893 0.914 2.480 sum 5.106 22.761 8.931 24.978 Atomic orbital electron populations 1.20367 0.85593 1.04263 1.03669 1.22593 0.97370 0.88978 0.95988 1.77242 0.86000 1.22546 1.26384 1.48313 1.06158 1.04668 1.55067 1.21996 0.83573 0.94670 1.04014 1.22922 0.98624 0.85143 0.98393 1.17868 0.91924 0.89376 1.21844 1.23181 0.92012 0.92599 0.94377 1.78472 1.18213 0.92029 1.14812 1.91407 1.28116 1.10866 1.87814 1.23438 0.85809 0.93459 1.00277 0.87255 1.19721 0.82533 0.85091 0.84177 1.90662 1.46893 1.65469 1.35260 1.42338 1.17291 1.24011 1.42551 1.17225 0.98549 0.93372 1.07571 1.24135 1.01319 0.95443 0.99814 1.78278 0.92165 1.18502 1.20120 1.44568 1.10856 1.13694 1.21778 1.19867 0.97492 1.01930 1.26254 0.86590 1.25651 0.97326 0.98801 0.95396 1.70212 1.20819 1.29375 1.19071 0.85826 0.79933 0.79991 0.78381 1.19571 1.20073 1.18819 1.21228 1.00525 0.95465 1.06174 1.22994 0.99919 0.89283 1.05699 0.90023 0.90732 0.88769 0.90132 0.88841 0.88928 0.79593 0.77038 0.80734 0.91391 0.83657 0.87259 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.03 36.00 0.36 -0.39 16 2 C 0.12 1.26 7.26 -82.03 -0.60 0.67 16 3 N -0.30 -3.15 12.51 33.89 0.42 -2.72 16 4 N -0.36 -2.70 3.99 -67.56 -0.27 -2.97 16 5 C 0.10 0.28 11.45 59.85 0.69 0.97 16 6 C 0.10 0.70 11.35 -16.48 -0.19 0.51 16 7 C -0.20 -1.95 6.12 -105.12 -0.64 -2.59 16 8 C 0.17 1.90 7.27 -79.44 -0.58 1.32 16 9 N -0.29 -4.19 10.71 35.29 0.38 -3.82 16 10 O -0.16 -2.75 11.82 -30.22 -0.36 -3.11 16 11 C 0.03 0.44 4.23 -26.97 -0.11 0.32 16 12 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 13 C 0.50 8.82 7.11 -10.98 -0.08 8.74 16 14 O -0.51 -11.55 13.74 -13.31 -0.18 -11.73 16 15 N -0.62 -10.32 5.46 -10.00 -0.05 -10.37 16 16 C -0.06 -1.39 6.90 -83.84 -0.58 -1.96 16 17 C -0.03 -0.83 10.85 -17.03 -0.18 -1.02 16 18 N -0.26 -7.54 10.40 30.80 0.32 -7.22 16 19 N -0.14 -3.83 3.74 -11.41 -0.04 -3.87 16 20 C -0.32 -8.41 10.25 -14.82 -0.15 -8.56 16 21 H 0.12 2.67 7.83 -52.49 -0.41 2.26 16 22 C 0.05 1.17 5.50 -17.51 -0.10 1.07 16 23 N -0.77 -21.40 11.81 55.49 0.66 -20.75 16 24 Si 0.93 18.69 29.55 -169.99 -5.02 13.66 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 28 C -0.08 -1.89 11.49 -16.39 -0.19 -2.07 16 29 C -0.14 -1.34 6.41 -26.48 -0.17 -1.51 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.99 6.70 -51.93 -0.35 0.65 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 36 H 0.19 0.53 8.06 -52.48 -0.42 0.10 16 37 H 0.40 4.70 8.83 -40.82 -0.36 4.34 16 38 H 0.18 4.65 5.92 -52.49 -0.31 4.34 16 39 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.15 2.69 8.06 -52.49 -0.42 2.27 16 41 H 0.11 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.11 1.12 7.90 -51.93 -0.41 0.71 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -38.74 369.87 -5.88 -44.62 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.78 Total: 7.20 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.52 Total: -4.51 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 1.41 Total: -51.72 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.54 Total: -14.84 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.74 -5.88 -44.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361921913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.200 kcal (2) G-P(sol) polarization free energy of solvation -38.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds