Wall clock time and date at job start Wed Apr 1 2020 02:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00397 * 2 1 4 4 H 1.48505 * 109.47005 * 239.99271 * 3 2 1 5 5 H 1.48498 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47454 * 119.99929 * 3 2 1 7 7 C 1.37883 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00385 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99728 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46959 * 175.13437 * 9 7 2 11 11 C 1.46905 * 110.99939 * 295.30165 * 10 9 7 12 12 C 1.53238 * 109.33968 * 187.25690 * 11 10 9 13 13 N 1.47079 * 108.52224 * 306.16564 * 12 11 10 14 14 C 1.34775 * 120.88455 * 231.19239 * 13 12 11 15 15 O 1.21490 * 120.00042 * 183.91712 * 14 13 12 16 16 C 1.48279 * 119.99582 * 3.90975 * 14 13 12 17 17 N 1.31634 * 126.52616 * 173.02796 * 16 14 13 18 18 C 1.34836 * 105.57714 * 180.15497 * 17 16 14 19 19 C 1.48487 * 126.32171 * 179.88537 * 18 17 16 20 20 C 1.39400 * 120.10119 * 179.71389 * 19 18 17 21 21 N 1.32015 * 119.87804 * 180.02562 * 20 19 18 22 22 C 1.32186 * 120.08248 * 0.02562 * 21 20 19 23 23 C 1.38474 * 120.20080 * 0.27340 * 22 21 20 24 24 N 1.31995 * 120.11854 * 359.43542 * 23 22 21 25 25 N 1.30864 * 107.35858 * 359.61861 * 18 17 16 26 26 O 1.21287 * 110.24510 * 0.24220 * 25 18 17 27 27 C 1.47087 * 118.23541 * 51.46057 * 13 12 11 28 28 C 1.46902 * 111.00317 * 59.60029 * 10 9 7 29 29 H 0.97005 * 119.99138 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47033 * 55.12833 * 9 7 2 31 31 H 1.08997 * 109.46600 * 295.12882 * 9 7 2 32 32 H 1.08995 * 109.49342 * 67.29585 * 11 10 9 33 33 H 1.09007 * 109.51085 * 307.22922 * 11 10 9 34 34 H 1.08996 * 109.62625 * 186.45634 * 12 11 10 35 35 H 1.09000 * 109.62931 * 65.87720 * 12 11 10 36 36 H 1.07997 * 120.05596 * 359.97438 * 20 19 18 37 37 H 1.08006 * 119.89805 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.93799 * 179.70677 * 23 22 21 39 39 H 1.09002 * 109.62795 * 68.24831 * 27 13 12 40 40 H 1.08998 * 109.62484 * 188.83316 * 27 13 12 41 41 H 1.08999 * 109.49524 * 292.70967 * 28 10 9 42 42 H 1.08999 * 109.49013 * 52.78907 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2011 -3.6133 -0.1163 11 6 2.8960 -3.5791 -1.4102 12 6 3.7384 -4.8494 -1.5676 13 7 4.6155 -4.9768 -0.3939 14 6 5.9408 -5.1742 -0.5388 15 8 6.6397 -5.3482 0.4396 16 6 6.5459 -5.1791 -1.8925 17 7 7.8302 -5.2306 -2.1764 18 6 7.9046 -5.2090 -3.5226 19 6 9.1466 -5.2465 -4.3355 20 6 9.0721 -5.2237 -5.7273 21 7 10.1791 -5.2577 -6.4458 22 6 11.3562 -5.3138 -5.8470 23 6 11.4339 -5.3428 -4.4647 24 7 10.3324 -5.3033 -3.7385 25 7 6.6799 -5.1546 -3.9804 26 8 5.8886 -5.1368 -3.0614 27 6 4.0071 -4.8890 0.9424 28 6 3.1549 -3.6112 1.0009 29 1 -0.4849 0.8402 -0.0004 30 1 0.5607 -2.5202 -0.8429 31 1 0.6909 -2.5953 0.9307 32 1 3.5453 -2.7046 -1.4512 33 1 2.1634 -3.5263 -2.2156 34 1 4.3438 -4.7776 -2.4711 35 1 3.0829 -5.7180 -1.6308 36 1 8.1105 -5.1792 -6.2169 37 1 12.2600 -5.3410 -6.4377 38 1 12.3976 -5.3933 -3.9799 39 1 3.3768 -5.7613 1.1157 40 1 4.7903 -4.8434 1.6990 41 1 3.8006 -2.7363 0.9263 42 1 2.6098 -3.5821 1.9444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412470621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:46 Heat of formation + Delta-G solvation = 126.931594 kcal Electronic energy + Delta-G solvation = -29234.254192 eV Core-core repulsion = 25026.568282 eV Total energy + Delta-G solvation = -4207.685910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.138 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.07892 -41.56438 -40.20917 -37.87410 -36.54458 -34.84238 -34.69475 -33.62255 -32.45089 -31.74444 -30.74787 -28.57398 -26.41277 -26.20058 -25.32000 -24.60053 -23.49640 -23.31786 -22.38072 -21.23403 -19.74319 -18.71642 -18.32793 -18.06155 -17.44435 -17.11707 -16.67699 -16.51949 -16.27861 -15.44344 -15.26828 -14.89580 -14.76456 -14.55119 -14.18092 -13.92831 -13.71534 -13.53233 -13.06716 -12.94374 -12.64542 -12.30118 -12.16467 -11.97411 -11.76647 -11.60568 -11.27491 -11.19345 -11.10938 -10.92515 -10.83696 -10.76288 -10.53612 -10.30838 -9.99231 -9.76029 -9.72637 -9.70134 -8.82021 -8.52714 -7.40102 -6.13303 -4.22997 -0.25414 0.31604 0.51697 1.71413 1.85807 2.41835 2.65746 2.79609 3.18898 3.22595 3.28266 3.30826 3.40764 3.63456 3.84009 4.03105 4.16478 4.32592 4.54068 4.62485 4.78519 4.91125 4.93199 5.09703 5.16024 5.25610 5.33358 5.39526 5.60730 5.68430 5.69433 5.80046 5.90744 6.26135 6.40359 6.47593 6.56192 6.63026 6.98620 7.09270 7.11403 7.39851 7.46321 7.71868 7.76731 7.84126 8.05074 8.15208 8.86043 9.44952 10.91972 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.013913 B = 0.002546 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.039335 B =10996.407641 C =11956.211316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.556 4.556 8 H 0.056 0.944 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.050 3.950 12 C 0.093 3.907 13 N -0.581 5.581 14 C 0.610 3.390 15 O -0.488 6.488 16 C 0.159 3.841 17 N -0.390 5.390 18 C 0.213 3.787 19 C 0.149 3.851 20 C 0.093 3.907 21 N -0.432 5.432 22 C 0.065 3.935 23 C 0.060 3.940 24 N -0.399 5.399 25 N -0.350 5.350 26 O 0.112 5.888 27 C 0.118 3.882 28 C 0.047 3.953 29 H 0.264 0.736 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.182 0.818 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.047 0.953 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.610 -13.013 -9.576 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.595 4.595 8 H 0.074 0.926 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.080 4.080 12 C -0.030 4.030 13 N -0.315 5.315 14 C 0.390 3.610 15 O -0.360 6.360 16 C -0.065 4.065 17 N -0.125 5.125 18 C -0.058 4.058 19 C 0.009 3.991 20 C -0.068 4.068 21 N -0.146 5.146 22 C -0.096 4.096 23 C -0.102 4.102 24 N -0.115 5.115 25 N -0.054 5.054 26 O 0.046 5.954 27 C -0.003 4.003 28 C -0.082 4.082 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.197 0.803 37 H 0.197 0.803 38 H 0.199 0.801 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.775 -13.425 -9.738 23.589 hybrid contribution 0.805 1.937 -0.029 2.098 sum 17.580 -11.488 -9.767 23.160 Atomic orbital electron populations 1.69922 1.05987 1.27115 1.49593 1.24939 0.94760 0.99150 0.94699 0.86723 0.79728 0.83292 0.78698 1.20307 1.21100 1.20186 1.21682 0.93212 0.92094 1.52463 0.92635 1.19773 0.90578 0.85120 0.98224 1.62527 1.16468 1.47240 1.00186 1.22238 0.97004 0.94331 0.94406 1.22608 0.93016 1.01024 0.86325 1.48148 1.04851 1.68252 1.10243 1.16181 0.82599 0.79608 0.82591 1.90889 1.60709 1.48841 1.35577 1.28696 0.87113 0.99708 0.90962 1.72188 1.15060 1.14333 1.10870 1.23169 0.91670 1.03591 0.87407 1.18791 0.88926 1.01006 0.90377 1.23754 0.99110 0.93852 0.90089 1.68613 0.98348 1.08621 1.39009 1.24094 0.97127 0.94152 0.94254 1.23940 0.97786 0.96169 0.92343 1.68304 0.97464 1.06052 1.39660 1.74864 1.00701 1.17510 1.12290 1.85636 1.33339 1.64123 1.12278 1.22219 0.96780 0.99974 0.81366 1.22393 0.94635 0.94742 0.96456 0.92621 0.94465 0.95001 0.93646 0.89591 0.89063 0.89341 0.80283 0.80332 0.80128 0.89927 0.88773 0.93464 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.56 -14.29 7.76 -34.43 -0.27 -14.56 16 8 H 0.06 1.43 5.88 -52.49 -0.31 1.12 16 9 C 0.19 4.41 5.11 -4.97 -0.03 4.38 16 10 N -0.54 -10.05 4.83 -235.46 -1.14 -11.19 16 11 C 0.05 0.82 5.24 -3.70 -0.02 0.80 16 12 C 0.09 1.19 6.47 -3.60 -0.02 1.17 16 13 N -0.58 -8.14 3.00 -173.13 -0.52 -8.66 16 14 C 0.61 9.22 7.73 -12.13 -0.09 9.12 16 15 O -0.49 -8.61 16.56 5.37 0.09 -8.52 16 16 C 0.16 2.28 7.93 -13.76 -0.11 2.17 16 17 N -0.39 -6.05 11.57 -10.23 -0.12 -6.17 16 18 C 0.21 2.89 7.90 -156.35 -1.24 1.65 16 19 C 0.15 1.76 6.76 -82.76 -0.56 1.20 16 20 C 0.09 0.90 10.87 -17.04 -0.19 0.72 16 21 N -0.43 -3.86 10.49 -12.79 -0.13 -3.99 16 22 C 0.06 0.40 11.22 -17.31 -0.19 0.21 16 23 C 0.06 0.42 11.22 -17.39 -0.20 0.23 16 24 N -0.40 -4.58 10.44 -9.57 -0.10 -4.68 16 25 N -0.35 -4.44 11.85 31.14 0.37 -4.07 16 26 O 0.11 1.42 7.86 16.73 0.13 1.55 16 27 C 0.12 1.63 6.62 -3.36 -0.02 1.60 16 28 C 0.05 0.80 5.17 -3.46 -0.02 0.78 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.85 7.10 -51.93 -0.37 0.48 16 33 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 34 H 0.09 1.06 3.94 -54.23 -0.21 0.85 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.18 1.46 7.87 -52.49 -0.41 1.04 16 37 H 0.18 0.39 8.06 -52.48 -0.42 -0.03 16 38 H 0.18 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.28 7.08 -51.93 -0.37 0.91 16 41 H 0.05 0.91 6.62 -51.93 -0.34 0.57 16 42 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -32.16 357.80 -7.88 -40.04 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.52 Total: -2.45 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -3.05 Total: 11.20 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.90 Total: -63.00 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: 0.22 Total: -6.97 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.16 -7.88 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412470621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.967 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds