Wall clock time and date at job start Wed Apr 1 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00397 * 2 1 4 4 H 1.48505 * 109.47005 * 239.99271 * 3 2 1 5 5 H 1.48498 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47454 * 119.99929 * 3 2 1 7 7 C 1.37883 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00385 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99728 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46959 * 175.13437 * 9 7 2 11 11 C 1.46905 * 110.99939 * 295.30165 * 10 9 7 12 12 C 1.53238 * 109.33968 * 187.25690 * 11 10 9 13 13 N 1.47079 * 108.52224 * 306.16564 * 12 11 10 14 14 C 1.34775 * 120.88455 * 231.19239 * 13 12 11 15 15 O 1.21490 * 120.00042 * 183.91712 * 14 13 12 16 16 C 1.48279 * 119.99582 * 3.90975 * 14 13 12 17 17 N 1.31634 * 126.52616 * 173.02796 * 16 14 13 18 18 C 1.34836 * 105.57714 * 180.15497 * 17 16 14 19 19 C 1.48487 * 126.32171 * 179.88537 * 18 17 16 20 20 C 1.39400 * 120.10119 * 179.71389 * 19 18 17 21 21 N 1.32015 * 119.87804 * 180.02562 * 20 19 18 22 22 C 1.32186 * 120.08248 * 0.02562 * 21 20 19 23 23 C 1.38474 * 120.20080 * 0.27340 * 22 21 20 24 24 N 1.31995 * 120.11854 * 359.43542 * 23 22 21 25 25 N 1.30864 * 107.35858 * 359.61861 * 18 17 16 26 26 O 1.21287 * 110.24510 * 0.24220 * 25 18 17 27 27 C 1.47087 * 118.23541 * 51.46057 * 13 12 11 28 28 C 1.46902 * 111.00317 * 59.60029 * 10 9 7 29 29 H 0.97005 * 119.99138 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47033 * 55.12833 * 9 7 2 31 31 H 1.08997 * 109.46600 * 295.12882 * 9 7 2 32 32 H 1.08995 * 109.49342 * 67.29585 * 11 10 9 33 33 H 1.09007 * 109.51085 * 307.22922 * 11 10 9 34 34 H 1.08996 * 109.62625 * 186.45634 * 12 11 10 35 35 H 1.09000 * 109.62931 * 65.87720 * 12 11 10 36 36 H 1.07997 * 120.05596 * 359.97438 * 20 19 18 37 37 H 1.08006 * 119.89805 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.93799 * 179.70677 * 23 22 21 39 39 H 1.09002 * 109.62795 * 68.24831 * 27 13 12 40 40 H 1.08998 * 109.62484 * 188.83316 * 27 13 12 41 41 H 1.08999 * 109.49524 * 292.70967 * 28 10 9 42 42 H 1.08999 * 109.49013 * 52.78907 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2011 -3.6133 -0.1163 11 6 2.8960 -3.5791 -1.4102 12 6 3.7384 -4.8494 -1.5676 13 7 4.6155 -4.9768 -0.3939 14 6 5.9408 -5.1742 -0.5388 15 8 6.6397 -5.3482 0.4396 16 6 6.5459 -5.1791 -1.8925 17 7 7.8302 -5.2306 -2.1764 18 6 7.9046 -5.2090 -3.5226 19 6 9.1466 -5.2465 -4.3355 20 6 9.0721 -5.2237 -5.7273 21 7 10.1791 -5.2577 -6.4458 22 6 11.3562 -5.3138 -5.8470 23 6 11.4339 -5.3428 -4.4647 24 7 10.3324 -5.3033 -3.7385 25 7 6.6799 -5.1546 -3.9804 26 8 5.8886 -5.1368 -3.0614 27 6 4.0071 -4.8890 0.9424 28 6 3.1549 -3.6112 1.0009 29 1 -0.4849 0.8402 -0.0004 30 1 0.5607 -2.5202 -0.8429 31 1 0.6909 -2.5953 0.9307 32 1 3.5453 -2.7046 -1.4512 33 1 2.1634 -3.5263 -2.2156 34 1 4.3438 -4.7776 -2.4711 35 1 3.0829 -5.7180 -1.6308 36 1 8.1105 -5.1792 -6.2169 37 1 12.2600 -5.3410 -6.4377 38 1 12.3976 -5.3933 -3.9799 39 1 3.3768 -5.7613 1.1157 40 1 4.7903 -4.8434 1.6990 41 1 3.8006 -2.7363 0.9263 42 1 2.6098 -3.5821 1.9444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412470621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:45 Heat of formation + Delta-G solvation = 100.619818 kcal Electronic energy + Delta-G solvation = -29235.395156 eV Core-core repulsion = 25026.568282 eV Total energy + Delta-G solvation = -4208.826875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.138 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -47.11503 -42.21002 -41.44619 -39.25860 -37.59163 -36.22537 -35.47442 -34.69357 -34.26372 -32.62979 -31.89800 -30.13829 -27.73531 -27.19181 -26.51774 -25.53031 -24.63159 -24.48557 -23.85255 -22.48380 -21.04310 -19.76603 -19.42788 -18.90238 -18.40742 -18.09640 -18.05245 -17.61158 -17.45437 -16.75563 -16.53791 -16.08492 -16.00277 -15.52850 -15.46507 -15.28002 -15.18234 -14.50089 -14.34587 -13.93309 -13.72633 -13.65565 -13.55562 -13.00082 -12.97110 -12.83829 -12.72571 -12.56784 -12.53723 -12.47920 -12.23934 -12.01532 -11.90267 -11.86088 -11.77235 -11.50073 -10.60456 -10.40337 -10.36608 -10.05503 -9.06944 -8.16971 -6.34965 -1.05982 -0.66639 -0.13353 0.71965 0.77302 1.35042 1.36421 1.39547 1.43576 1.56018 1.83195 2.35340 2.42895 2.53904 2.94373 3.09064 3.13823 3.24636 3.29947 3.40939 3.81485 3.88803 3.99622 4.01909 4.15584 4.23586 4.31629 4.34983 4.39946 4.52080 4.60490 4.76985 4.89681 5.05376 5.12035 5.15288 5.17238 5.31701 5.35916 5.73457 5.81055 6.01547 6.02176 6.20416 6.33935 6.44986 6.49633 6.61751 6.85198 7.36462 8.85093 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.013913 B = 0.002546 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.039335 B =10996.407641 C =11956.211316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.557 4.557 8 H 0.052 0.948 9 C 0.201 3.799 10 N -0.533 5.533 11 C 0.049 3.951 12 C 0.105 3.895 13 N -0.579 5.579 14 C 0.616 3.384 15 O -0.516 6.516 16 C 0.157 3.843 17 N -0.417 5.417 18 C 0.213 3.787 19 C 0.116 3.884 20 C 0.095 3.905 21 N -0.450 5.450 22 C 0.086 3.914 23 C 0.064 3.936 24 N -0.436 5.436 25 N -0.348 5.348 26 O 0.121 5.879 27 C 0.128 3.872 28 C 0.049 3.951 29 H 0.265 0.735 30 H 0.016 0.984 31 H 0.011 0.989 32 H 0.019 0.981 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.186 0.814 37 H 0.226 0.774 38 H 0.219 0.781 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.020 0.980 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.842 -13.860 -10.877 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.596 4.596 8 H 0.070 0.930 9 C 0.074 3.926 10 N -0.256 5.256 11 C -0.080 4.080 12 C -0.017 4.017 13 N -0.312 5.312 14 C 0.397 3.603 15 O -0.390 6.390 16 C -0.067 4.067 17 N -0.152 5.152 18 C -0.059 4.059 19 C -0.022 4.022 20 C -0.065 4.065 21 N -0.164 5.164 22 C -0.076 4.076 23 C -0.099 4.099 24 N -0.152 5.152 25 N -0.051 5.051 26 O 0.055 5.945 27 C 0.007 3.993 28 C -0.080 4.080 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.203 0.797 37 H 0.242 0.758 38 H 0.236 0.764 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.038 0.962 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.966 -14.282 -11.055 26.189 hybrid contribution 0.270 2.174 0.294 2.210 sum 19.236 -12.108 -10.761 25.148 Atomic orbital electron populations 1.70025 1.07245 1.27851 1.50881 1.25674 0.95503 1.02324 0.94705 0.85793 0.78567 0.79744 0.78682 1.19954 1.20651 1.19876 1.21948 0.93152 0.93187 1.51345 0.93026 1.19438 0.91012 0.86001 0.96137 1.62455 1.16800 1.44609 1.01755 1.22288 0.96927 0.95457 0.93347 1.22603 0.92794 0.99908 0.86408 1.48203 1.04684 1.67599 1.10674 1.16161 0.82528 0.79079 0.82507 1.90871 1.61325 1.50266 1.36587 1.28419 0.87096 1.00152 0.91025 1.72165 1.15697 1.15153 1.12173 1.23565 0.92578 1.02791 0.86917 1.18800 0.88633 1.03939 0.90859 1.23800 0.99947 0.93457 0.89290 1.68706 0.99010 1.09483 1.39202 1.24879 0.97641 0.90671 0.94414 1.24653 0.97919 0.94371 0.92929 1.68240 0.98381 1.07278 1.41337 1.74829 1.00599 1.17760 1.11898 1.85598 1.33144 1.63941 1.11804 1.22159 0.96640 0.98973 0.81526 1.22399 0.94119 0.95582 0.95912 0.92584 0.96571 0.97069 0.96232 0.89265 0.87666 0.86502 0.79681 0.75792 0.76437 0.87267 0.88250 0.96183 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.66 13.29 21.45 0.28 -52.37 16 2 C 0.02 0.98 5.46 84.66 0.46 1.44 16 3 Si 0.95 43.07 29.54 68.60 2.03 45.09 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.56 -29.22 7.76 25.60 0.20 -29.02 16 8 H 0.05 2.71 5.88 -2.91 -0.02 2.69 16 9 C 0.20 9.63 5.11 85.56 0.44 10.07 16 10 N -0.53 -19.82 4.83 -898.86 -4.34 -24.16 16 11 C 0.05 1.60 5.24 86.38 0.45 2.06 16 12 C 0.10 2.51 6.47 86.35 0.56 3.07 16 13 N -0.58 -15.47 3.00 -819.96 -2.46 -17.93 16 14 C 0.62 18.24 7.73 86.92 0.67 18.91 16 15 O -0.52 -18.08 16.56 -3.69 -0.06 -18.14 16 16 C 0.16 4.44 7.93 87.49 0.69 5.13 16 17 N -0.42 -12.99 11.57 -302.62 -3.50 -16.49 16 18 C 0.21 5.77 7.90 137.41 1.09 6.86 16 19 C 0.12 2.69 6.76 42.00 0.28 2.97 16 20 C 0.09 1.75 10.87 84.95 0.92 2.68 16 21 N -0.45 -7.07 10.49 -194.37 -2.04 -9.11 16 22 C 0.09 0.77 11.22 84.70 0.95 1.72 16 23 C 0.06 0.74 11.22 84.72 0.95 1.69 16 24 N -0.44 -9.57 10.44 -184.20 -1.92 -11.49 16 25 N -0.35 -8.68 11.85 -58.08 -0.69 -9.37 16 26 O 0.12 2.97 7.86 69.95 0.55 3.52 16 27 C 0.13 3.35 6.62 86.50 0.57 3.93 16 28 C 0.05 1.66 5.17 86.54 0.45 2.11 16 29 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 30 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 31 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.02 0.74 7.10 -2.39 -0.02 0.72 16 33 H 0.09 2.85 8.06 -2.38 -0.02 2.84 16 34 H 0.11 2.29 3.94 -38.76 -0.15 2.13 16 35 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.19 2.93 7.87 -2.91 -0.02 2.91 16 37 H 0.23 -0.18 8.06 -2.91 -0.02 -0.20 16 38 H 0.22 0.62 8.06 -2.91 -0.02 0.60 16 39 H 0.11 2.37 8.14 -2.39 -0.02 2.36 16 40 H 0.10 2.58 7.08 -2.39 -0.02 2.56 16 41 H 0.02 0.79 6.62 -2.39 -0.02 0.77 16 42 H 0.09 2.90 8.11 -2.39 -0.02 2.88 16 Total: -1.00 -71.69 357.80 -2.52 -74.21 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: 0.95 Total: 2.64 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: 8.69 Total: 33.61 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -14.67 Total: -140.93 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.49 Total: -14.62 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -71.69 -2.52 -74.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412470621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.828 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds