Wall clock time and date at job start Wed Apr 1 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46556 * 210.30536 * 3 2 1 5 5 N 1.46901 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.48053 * 111.00057 * 69.87209 * 5 4 3 7 7 C 1.51181 * 105.67682 * 91.76258 * 6 5 4 8 8 C 1.38178 * 131.77857 * 197.48236 * 7 6 5 9 9 C 1.38219 * 120.02623 * 180.27863 * 8 7 6 10 10 C 1.38260 * 120.00739 * 359.42105 * 9 8 7 11 11 C 1.50693 * 120.00286 * 180.30128 * 10 9 8 12 12 N 1.46508 * 109.47010 * 270.31809 * 11 10 9 13 13 C 1.34770 * 119.99883 * 180.02562 * 12 11 10 14 14 O 1.21291 * 120.00329 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99821 * 180.02562 * 13 12 11 16 16 S 1.81007 * 109.47010 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99737 * 179.97438 * 16 15 13 18 18 H 1.07992 * 120.00009 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99816 * 179.97438 * 17 16 15 20 20 N 1.31631 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00222 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47026 * 89.99757 * 21 19 17 23 23 H 1.48496 * 109.47551 * 210.00054 * 21 19 17 24 24 H 1.48497 * 109.46971 * 330.00428 * 21 19 17 25 25 C 1.38224 * 119.99541 * 0.61729 * 10 9 8 26 26 C 1.38184 * 120.03300 * 359.66056 * 25 10 9 27 27 C 1.48056 * 111.00263 * 184.87945 * 5 4 3 28 28 H 4.44646 * 5.63338 * 179.97438 * 4 1 2 29 29 H 1.08995 * 109.46993 * 90.30810 * 3 2 1 30 30 H 1.08995 * 109.47052 * 330.30376 * 3 2 1 31 31 H 1.08991 * 109.47667 * 60.00177 * 4 3 2 32 32 H 1.09008 * 109.47271 * 299.99935 * 4 3 2 33 33 H 1.08997 * 110.20814 * 332.70608 * 6 5 4 34 34 H 1.09004 * 110.20737 * 210.81199 * 6 5 4 35 35 H 1.08002 * 119.98243 * 359.97438 * 8 7 6 36 36 H 1.08010 * 119.99393 * 179.74042 * 9 8 7 37 37 H 1.09000 * 109.47255 * 30.31344 * 11 10 9 38 38 H 1.08996 * 109.47054 * 150.31806 * 11 10 9 39 39 H 0.97001 * 119.99701 * 359.97438 * 12 11 10 40 40 H 1.09000 * 109.46711 * 299.99714 * 15 13 12 41 41 H 1.08996 * 109.47299 * 59.99992 * 15 13 12 42 42 H 0.97004 * 120.00593 * 179.97438 * 20 19 17 43 43 H 1.08002 * 119.98256 * 179.68253 * 25 10 9 44 44 H 1.09003 * 110.20064 * 27.28791 * 27 5 4 45 45 H 1.08992 * 110.20846 * 149.18976 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.2463 0.7279 5 7 4.6244 1.2474 0.7275 6 6 5.1544 1.4922 -0.6331 7 6 5.3415 2.9889 -0.7355 8 6 5.4978 3.8248 -1.8246 9 6 5.6594 5.1844 -1.6354 10 6 5.6529 5.7102 -0.3567 11 6 5.8223 7.1933 -0.1509 12 7 7.2468 7.5080 -0.0161 13 6 7.6400 8.7825 0.1775 14 8 6.8146 9.6690 0.2397 15 6 9.1054 9.1062 0.3155 16 16 9.3089 10.8877 0.5629 17 6 11.0639 10.9803 0.6902 18 1 11.6591 10.0826 0.6118 19 6 11.6813 12.2070 0.8913 20 7 10.9558 13.3011 0.9874 21 14 13.5417 12.3052 1.0270 22 1 14.1263 12.5122 -0.3223 23 1 13.9146 13.4413 1.9076 24 1 14.0634 11.0400 1.6036 25 6 5.4974 4.8745 0.7333 26 6 5.3414 3.5144 0.5454 27 6 5.1545 2.3773 1.5239 28 1 -1.0501 -0.0002 -0.0004 29 1 3.0094 0.0063 -1.0276 30 1 3.0098 -0.8918 0.5091 31 1 2.7921 1.2408 1.7555 32 1 2.7916 2.1389 0.2188 33 1 4.4407 1.1498 -1.3824 34 1 6.1098 0.9836 -0.7622 35 1 5.4985 3.4149 -2.8238 36 1 5.7858 5.8368 -2.4869 37 1 5.4116 7.7282 -1.0072 38 1 5.2959 7.4971 0.7539 39 1 7.9069 6.7989 -0.0655 40 1 9.5166 8.5709 1.1713 41 1 9.6313 8.8030 -0.5897 42 1 11.3872 14.1584 1.1283 43 1 5.4974 5.2848 1.7324 44 1 4.4408 2.6600 2.2977 45 1 6.1099 2.1060 1.9728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484875170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:26 Heat of formation + Delta-G solvation = 51.757829 kcal Electronic energy + Delta-G solvation = -25205.282888 eV Core-core repulsion = 21508.337662 eV Total energy + Delta-G solvation = -3696.945226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09246 -39.24674 -37.89850 -35.25789 -34.27995 -32.43047 -31.94159 -31.88256 -30.00486 -29.09165 -28.13365 -25.85510 -25.42374 -24.55096 -22.49757 -21.36449 -20.86441 -20.40026 -18.57091 -17.90545 -16.80450 -16.62347 -16.29296 -16.20448 -15.89492 -15.39148 -15.04783 -14.81368 -14.80464 -14.68490 -14.11556 -13.94921 -13.51967 -13.48659 -13.22790 -12.99352 -12.92483 -12.80907 -12.62016 -12.59823 -12.14762 -11.87585 -11.77915 -11.56549 -11.18221 -11.06406 -11.02566 -10.76598 -10.68185 -10.53805 -9.82221 -9.56164 -9.30530 -9.15172 -9.07259 -8.91741 -8.82499 -8.23944 -6.50268 -6.21792 -3.92446 0.82497 1.00728 2.31813 2.39705 2.99542 3.08182 3.22317 3.24297 3.29628 3.32709 3.41642 3.82406 3.90392 4.03476 4.20352 4.25418 4.45547 4.51614 4.58684 4.62633 4.77535 4.90129 5.02276 5.07732 5.13288 5.13987 5.16920 5.20288 5.30635 5.35395 5.38451 5.44869 5.50899 5.57175 5.63671 5.72942 5.78993 5.88745 5.96086 5.96924 6.13898 6.24926 6.29664 6.38812 6.54467 6.59976 7.16694 7.59507 7.69155 8.35142 8.59001 9.23561 10.85641 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.001556 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.471878 B =17990.144218 C =18334.765404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.189 4.189 3 C -0.008 4.008 4 C 0.046 3.954 5 N -0.501 5.501 6 C 0.072 3.928 7 C -0.123 4.123 8 C -0.100 4.100 9 C -0.097 4.097 10 C -0.098 4.098 11 C 0.163 3.837 12 N -0.735 5.735 13 C 0.532 3.468 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.078 4.078 26 C -0.129 4.129 27 C 0.079 3.921 28 H 0.217 0.783 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.126 0.874 44 H 0.082 0.918 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.903 -29.285 -3.315 33.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.189 4.189 3 C -0.045 4.045 4 C -0.082 4.082 5 N -0.221 5.221 6 C -0.055 4.055 7 C -0.124 4.124 8 C -0.118 4.118 9 C -0.115 4.115 10 C -0.099 4.099 11 C 0.039 3.961 12 N -0.390 5.390 13 C 0.318 3.682 14 O -0.392 6.392 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.097 4.097 26 C -0.131 4.131 27 C -0.049 4.049 28 H 0.234 0.766 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.144 0.856 44 H 0.101 0.899 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.143 -28.142 -2.936 33.083 hybrid contribution 1.959 -0.438 -0.417 2.050 sum -15.185 -28.580 -3.352 32.536 Atomic orbital electron populations 1.24963 0.96020 1.00426 1.00831 1.23004 0.94438 1.00824 1.00663 1.18656 0.84455 0.99504 1.01889 1.22286 0.87636 0.96798 1.01526 1.65192 1.07915 1.40420 1.08619 1.21855 1.01787 0.90609 0.91293 1.21142 1.00691 0.96621 0.93987 1.20483 1.00517 0.92828 0.98014 1.21099 0.98671 0.94935 0.96829 1.19883 1.01448 0.95255 0.93275 1.20105 0.83255 0.89881 1.02821 1.46070 1.07353 1.09108 1.76434 1.20344 0.90951 0.81649 0.75246 1.90709 1.54296 1.45991 1.48178 1.23531 0.94124 1.07771 1.04919 1.85395 1.08612 0.94871 1.94471 1.22871 0.91552 0.96396 1.57600 0.90920 1.24986 0.99307 0.94685 0.94556 1.70018 1.35712 0.98507 1.46060 0.86169 0.83170 0.77940 0.78229 1.20266 1.20737 1.19698 1.20450 0.98857 0.91462 0.98966 1.21078 1.01517 0.94618 0.95868 1.21745 1.01863 0.86179 0.95107 0.76581 0.89540 0.88513 0.89867 0.93680 0.89879 0.88125 0.85838 0.85282 0.90644 0.90717 0.76702 0.89195 0.89197 0.92180 0.85638 0.89936 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.34 19.25 29.55 0.57 -0.77 16 2 C -0.19 -1.37 13.34 -37.12 -0.50 -1.86 16 3 C -0.01 -0.05 5.74 -29.51 -0.17 -0.22 16 4 C 0.05 0.29 4.59 -3.82 -0.02 0.27 16 5 N -0.50 -3.26 5.50 -234.91 -1.29 -4.55 16 6 C 0.07 0.45 6.41 -4.10 -0.03 0.42 16 7 C -0.12 -0.98 6.12 -104.33 -0.64 -1.62 16 8 C -0.10 -0.80 10.04 -39.61 -0.40 -1.19 16 9 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 10 C -0.10 -0.95 5.25 -104.62 -0.55 -1.50 16 11 C 0.16 1.92 5.80 -5.19 -0.03 1.89 16 12 N -0.73 -9.86 5.55 -61.47 -0.34 -10.20 16 13 C 0.53 9.89 7.85 -10.99 -0.09 9.81 16 14 O -0.52 -11.73 15.86 5.55 0.09 -11.64 16 15 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 21 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.08 -0.72 9.70 -39.61 -0.38 -1.10 16 26 C -0.13 -1.08 6.20 -104.33 -0.65 -1.73 16 27 C 0.08 0.54 6.65 -4.11 -0.03 0.51 16 28 H 0.22 0.73 7.80 -54.08 -0.42 0.31 16 29 H 0.09 0.42 6.52 -51.93 -0.34 0.08 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.51 7.97 -51.93 -0.41 0.09 16 32 H 0.04 0.34 7.99 -51.92 -0.42 -0.08 16 33 H 0.08 0.43 6.17 -51.93 -0.32 0.10 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.40 4.41 8.46 -40.82 -0.35 4.06 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -34.97 399.15 -11.32 -46.28 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.42 Total: 1.18 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -2.86 Total: -14.18 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.90 Total: -40.20 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.97 -11.32 -46.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484875170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.041 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds