Wall clock time and date at job start Wed Apr 1 2020 02:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47132 * 2 1 4 4 H 1.09000 * 109.47199 * 305.00422 * 3 2 1 5 5 F 1.39901 * 109.47292 * 65.00409 * 3 2 1 6 6 C 1.50703 * 109.47118 * 185.00214 * 3 2 1 7 7 O 1.21279 * 119.99955 * 283.91098 * 6 3 2 8 8 N 1.34780 * 119.99929 * 103.90814 * 6 3 2 9 9 C 1.46997 * 121.37343 * 4.27295 * 8 6 3 10 10 C 1.49927 * 109.38810 * 222.82679 * 9 8 6 11 11 C 1.29451 * 123.62529 * 349.43428 * 10 9 8 12 12 C 1.50712 * 117.69053 * 180.61566 * 11 10 9 13 13 N 1.46498 * 109.46725 * 94.97880 * 12 11 10 14 14 C 1.34783 * 119.99710 * 179.97438 * 13 12 11 15 15 O 1.21275 * 120.00005 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99610 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.46856 * 180.02562 * 16 14 13 18 18 C 1.76197 * 99.99940 * 179.97438 * 17 16 14 19 19 H 1.07991 * 120.00107 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99887 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00215 * 180.02562 * 20 18 17 22 22 Si 1.86809 * 120.00039 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46717 * 89.99567 * 22 20 18 24 24 H 1.48499 * 109.46952 * 209.99872 * 22 20 18 25 25 H 1.48502 * 109.46718 * 329.99890 * 22 20 18 26 26 C 1.49967 * 124.61887 * 0.59316 * 11 10 9 27 27 C 1.47341 * 121.37130 * 184.55309 * 8 6 3 28 28 H 1.08996 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47124 * 59.99586 * 1 2 3 30 30 H 1.09006 * 109.46870 * 300.00075 * 1 2 3 31 31 H 1.08998 * 109.47124 * 120.00414 * 2 1 3 32 32 H 1.08999 * 109.46540 * 240.00047 * 2 1 3 33 33 H 1.08997 * 109.52775 * 342.85407 * 9 8 6 34 34 H 1.09000 * 109.52270 * 103.04090 * 9 8 6 35 35 H 1.07997 * 118.19544 * 169.16894 * 10 9 8 36 36 H 1.09001 * 109.46742 * 214.97767 * 12 11 10 37 37 H 1.08993 * 109.46757 * 334.98017 * 12 11 10 38 38 H 0.97000 * 120.00531 * 0.02562 * 13 12 11 39 39 H 1.09001 * 109.47350 * 299.99417 * 16 14 13 40 40 H 1.08989 * 109.47417 * 60.00055 * 16 14 13 41 41 H 0.97002 * 120.00092 * 180.02562 * 21 20 18 42 42 H 1.08991 * 109.31734 * 220.74082 * 26 11 10 43 43 H 1.08998 * 109.31201 * 101.31120 * 26 11 10 44 44 H 1.09002 * 109.77576 * 237.81305 * 27 8 6 45 45 H 1.08995 * 109.77913 * 358.56569 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6700 2.0680 1.1954 6 6 3.5420 1.4443 -0.1239 7 8 4.2298 1.1630 0.8346 8 7 4.1208 1.7585 -1.2998 9 6 3.3214 2.1936 -2.4541 10 6 3.8316 1.5230 -3.6942 11 6 4.9383 0.8531 -3.7432 12 6 5.3309 0.2450 -5.0652 13 7 6.2389 1.1533 -5.7700 14 6 6.7237 0.8154 -6.9814 15 8 6.4079 -0.2402 -7.4880 16 6 7.6582 1.7495 -7.7061 17 16 8.1296 1.0192 -9.2938 18 6 9.1902 2.2843 -9.9096 19 1 9.3675 3.1734 -9.3227 20 6 9.7987 2.1378 -11.1485 21 7 10.5914 3.0826 -11.6083 22 14 9.4925 0.5995 -12.1633 23 1 8.3159 0.8135 -13.0436 24 1 10.6876 0.3098 -12.9958 25 1 9.2307 -0.5473 -11.2570 26 6 5.8576 0.6400 -2.5777 27 6 5.5803 1.6740 -1.4831 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.2773 1.9228 -2.2972 34 1 3.4050 3.2744 -2.5684 35 1 3.2414 1.5993 -4.5953 36 1 5.8316 -0.7076 -4.8924 37 1 4.4385 0.0822 -5.6694 38 1 6.4918 1.9974 -5.3646 39 1 7.1577 2.7022 -7.8792 40 1 8.5503 1.9123 -7.1016 41 1 11.0163 2.9803 -12.4743 42 1 6.8908 0.7361 -2.9111 43 1 5.7032 -0.3612 -2.1752 44 1 5.9707 2.6456 -1.7861 45 1 6.0516 1.3615 -0.5514 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572575334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:49 Heat of formation + Delta-G solvation = -108.361113 kcal Electronic energy + Delta-G solvation = -26878.610612 eV Core-core repulsion = 22743.952883 eV Total energy + Delta-G solvation = -4134.657729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.34685 -40.78723 -39.44933 -38.13715 -35.43476 -34.70564 -33.03278 -32.46899 -31.90950 -29.92492 -28.53251 -27.12861 -25.64713 -24.44485 -24.00194 -22.52844 -20.69264 -20.59362 -18.77795 -18.24456 -17.61484 -17.19907 -16.55792 -16.41371 -16.23015 -16.01764 -15.48594 -15.38033 -15.02121 -14.92219 -14.53074 -14.36078 -14.23963 -14.00932 -13.84492 -13.52734 -13.42664 -13.24676 -12.85061 -12.82962 -12.77543 -12.57160 -12.51439 -12.08230 -11.87329 -11.70514 -11.39241 -11.30613 -11.24040 -11.03774 -10.65440 -10.22432 -9.93808 -9.80617 -9.44154 -9.25575 -9.09916 -9.02230 -8.54284 -6.95863 -6.31994 -4.04219 1.44363 1.85842 2.17057 2.76463 2.89692 3.29672 3.35153 3.47691 3.55659 3.66234 3.87703 3.92556 4.04237 4.24200 4.25196 4.30084 4.43250 4.54221 4.67644 4.70336 4.76324 4.79687 4.84407 5.02294 5.04469 5.07038 5.15017 5.21793 5.24813 5.32334 5.37155 5.44615 5.48033 5.59605 5.62004 5.71118 5.79030 5.84393 5.95946 6.31420 6.41251 6.69305 7.43761 7.51754 7.90933 8.38346 8.40498 9.14067 10.77145 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.030868 B = 0.001707 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.862671 B =16396.874760 C =16759.759086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.144 4.144 3 C 0.078 3.922 4 H 0.106 0.894 5 F -0.186 7.186 6 C 0.498 3.502 7 O -0.519 6.519 8 N -0.609 5.609 9 C 0.132 3.868 10 C -0.157 4.157 11 C -0.118 4.118 12 C 0.153 3.847 13 N -0.733 5.733 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.101 4.101 27 C 0.111 3.889 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.579 -2.172 23.787 30.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.182 4.182 3 C 0.039 3.961 4 H 0.123 0.877 5 F -0.167 7.167 6 C 0.284 3.716 7 O -0.394 6.394 8 N -0.344 5.344 9 C 0.010 3.990 10 C -0.177 4.177 11 C -0.119 4.119 12 C 0.029 3.971 13 N -0.388 5.388 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.274 4.274 17 S 0.085 5.915 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.139 4.139 27 C -0.011 4.011 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.145 0.855 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.234 0.766 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.616 -4.023 23.353 30.763 hybrid contribution 0.532 1.269 0.034 1.377 sum -19.084 -2.754 23.387 30.310 Atomic orbital electron populations 1.21770 0.93619 1.02951 1.02703 1.22040 0.97973 0.93232 1.04965 1.21702 0.92033 0.96562 0.85826 0.87676 1.92893 1.91821 1.83780 1.48213 1.20946 0.90653 0.77258 0.82718 1.90754 1.64511 1.47188 1.36900 1.48225 1.08277 1.66604 1.11287 1.20684 0.95370 0.99507 0.83405 1.22250 0.97801 0.98957 0.98710 1.20849 0.96315 0.99112 0.95639 1.20351 0.94323 0.93214 0.89187 1.45994 1.49915 1.23193 1.19693 1.20319 0.80456 0.87135 0.80421 1.90706 1.58366 1.24263 1.65984 1.23276 1.00886 1.01615 1.01665 1.84800 1.61337 1.30169 1.15236 1.22308 1.31673 1.05589 1.07413 0.89375 1.24717 0.93495 0.96601 0.96492 1.69936 1.29180 1.32917 1.19571 0.86735 0.78727 0.84573 0.81813 1.19202 1.19915 1.15936 1.20783 0.99665 1.00197 0.93239 1.21765 0.79480 0.99738 1.00139 0.91461 0.92129 0.91766 0.89609 0.89561 0.88583 0.89284 0.85482 0.90912 0.90942 0.76603 0.88486 0.88434 0.91916 0.89026 0.89883 0.90292 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.83 37.16 0.37 -0.24 16 2 C -0.14 -0.76 5.68 -26.73 -0.15 -0.91 16 3 C 0.08 0.50 3.31 -27.88 -0.09 0.41 16 4 H 0.11 0.35 5.59 -51.93 -0.29 0.06 16 5 F -0.19 -1.72 16.67 2.25 0.04 -1.68 16 6 C 0.50 4.39 6.85 -10.98 -0.08 4.31 16 7 O -0.52 -6.70 16.50 5.56 0.09 -6.61 16 8 N -0.61 -4.07 2.97 -174.36 -0.52 -4.58 16 9 C 0.13 0.54 6.37 -5.30 -0.03 0.51 16 10 C -0.16 -0.82 9.46 -35.97 -0.34 -1.16 16 11 C -0.12 -0.78 5.22 -100.99 -0.53 -1.31 16 12 C 0.15 1.45 5.66 -5.19 -0.03 1.42 16 13 N -0.73 -8.20 5.55 -61.47 -0.34 -8.54 16 14 C 0.53 8.79 7.85 -10.98 -0.09 8.71 16 15 O -0.52 -10.69 15.86 5.56 0.09 -10.60 16 16 C -0.12 -2.28 6.16 36.01 0.22 -2.06 16 17 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 18 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 19 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 20 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 21 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 22 Si 0.86 21.49 27.74 -169.99 -4.72 16.77 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 26 C -0.10 -0.64 5.95 -28.18 -0.17 -0.81 16 27 C 0.11 0.73 6.51 -3.53 -0.02 0.71 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.30 7.94 -51.93 -0.41 -0.11 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.19 5.56 -51.93 -0.29 -0.09 16 34 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.13 0.60 7.73 -52.49 -0.41 0.19 16 36 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 37 H 0.07 0.73 7.78 -51.93 -0.40 0.33 16 38 H 0.40 3.44 8.46 -40.82 -0.35 3.09 16 39 H 0.10 1.65 8.14 -51.91 -0.42 1.23 16 40 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.79 7.08 -51.93 -0.37 0.42 16 LS Contribution 389.13 15.07 5.86 5.86 Total: -1.00 -36.49 389.13 -8.18 -44.66 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.74 Total: -2.09 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.73 Total: -2.24 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.08 Total: -38.57 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.18 Total: -17.21 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.72 Total: 16.77 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.49 -8.18 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572575334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.699 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds