Wall clock time and date at job start Wed Apr 1 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46977 * 2 1 4 4 H 1.08996 * 109.46908 * 55.00071 * 3 2 1 5 5 F 1.39898 * 109.46923 * 295.00005 * 3 2 1 6 6 C 1.50701 * 109.47012 * 175.00137 * 3 2 1 7 7 O 1.21274 * 120.00105 * 44.42847 * 6 3 2 8 8 N 1.34773 * 119.99940 * 224.43302 * 6 3 2 9 9 C 1.47007 * 121.37642 * 354.66578 * 8 6 3 10 10 C 1.50320 * 109.16642 * 222.97153 * 9 8 6 11 11 C 1.29452 * 123.65175 * 349.01613 * 10 9 8 12 12 C 1.50697 * 117.69875 * 180.57756 * 11 10 9 13 13 N 1.46499 * 109.47423 * 94.99657 * 12 11 10 14 14 C 1.34770 * 120.00107 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00216 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00278 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47377 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00094 * 179.97438 * 17 16 14 19 19 H 1.08009 * 119.99935 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00231 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00086 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00005 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46964 * 90.00319 * 22 20 18 24 24 H 1.48498 * 109.47065 * 209.99986 * 22 20 18 25 25 H 1.48501 * 109.47407 * 330.00255 * 22 20 18 26 26 C 1.49974 * 124.61082 * 0.86019 * 11 10 9 27 27 C 1.47341 * 121.37829 * 174.68278 * 8 6 3 28 28 H 1.08998 * 109.47134 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47127 * 300.00036 * 1 2 3 30 30 H 1.09000 * 109.47432 * 59.99840 * 1 2 3 31 31 H 1.08993 * 109.47243 * 240.00350 * 2 1 3 32 32 H 1.08997 * 109.47463 * 119.99619 * 2 1 3 33 33 H 1.08996 * 109.52594 * 103.05875 * 9 8 6 34 34 H 1.09012 * 109.57086 * 342.90396 * 9 8 6 35 35 H 1.07996 * 118.17737 * 168.99757 * 10 9 8 36 36 H 1.09001 * 109.47113 * 215.00279 * 12 11 10 37 37 H 1.09010 * 109.46751 * 334.99806 * 12 11 10 38 38 H 0.97003 * 119.99487 * 0.02562 * 13 12 11 39 39 H 1.09000 * 109.47138 * 300.00909 * 16 14 13 40 40 H 1.09000 * 109.46606 * 59.99955 * 16 14 13 41 41 H 0.96999 * 120.00100 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.31550 * 101.28792 * 26 11 10 43 43 H 1.09000 * 109.31724 * 220.71956 * 26 11 10 44 44 H 1.08998 * 109.78104 * 237.79029 * 27 8 6 45 45 H 1.09000 * 109.77310 * 358.54369 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 9 1.6698 2.0680 -1.1954 6 6 3.5419 1.4444 0.1238 7 8 4.2057 0.6741 -0.5370 8 7 4.1473 2.3020 0.9690 9 6 3.3841 3.3257 1.6975 10 6 4.1410 4.6240 1.6620 11 6 5.3654 4.7297 1.2551 12 6 5.9992 6.0964 1.2889 13 7 6.7525 6.2548 2.5354 14 6 7.4079 7.4056 2.7851 15 8 7.3738 8.3103 1.9781 16 6 8.1832 7.5684 4.0671 17 16 8.9443 9.2100 4.1076 18 6 9.7613 9.1301 5.6667 19 1 9.6890 8.2365 6.2691 20 6 10.4976 10.2155 6.1209 21 7 10.5852 11.3047 5.3871 22 14 11.3642 10.1304 7.7735 23 1 12.7364 9.5946 7.5859 24 1 11.4406 11.4913 8.3630 25 1 10.6047 9.2378 8.6855 26 6 6.1956 3.5888 0.7468 27 6 5.6016 2.2527 1.2007 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.2484 3.0113 2.7322 34 1 2.4100 3.4590 1.2265 35 1 3.6352 5.5184 1.9942 36 1 6.6744 6.2049 0.4400 37 1 5.2220 6.8588 1.2346 38 1 6.7800 5.5311 3.1806 39 1 7.5083 7.4601 4.9161 40 1 8.9601 6.8058 4.1210 41 1 11.1002 12.0631 5.7043 42 1 6.2226 3.6198 -0.3424 43 1 7.2108 3.6816 1.1327 44 1 5.8011 2.1017 2.2615 45 1 6.0395 1.4383 0.6235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572575335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:52 Heat of formation + Delta-G solvation = -109.602170 kcal Electronic energy + Delta-G solvation = -26738.216393 eV Core-core repulsion = 22603.504847 eV Total energy + Delta-G solvation = -4134.711546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.38767 -40.72342 -39.33216 -38.11840 -35.31649 -34.58389 -32.98154 -32.44988 -31.85200 -29.78136 -28.46898 -27.06320 -25.50945 -24.41498 -23.99273 -22.39482 -20.61177 -20.45755 -18.70046 -18.20242 -17.66118 -17.06111 -16.64661 -16.25218 -16.15463 -15.98287 -15.46954 -15.30896 -14.93703 -14.82419 -14.49814 -14.40020 -14.10726 -14.00014 -13.77802 -13.43241 -13.38841 -13.09180 -12.80157 -12.74645 -12.69232 -12.55812 -12.32629 -12.02729 -11.73974 -11.66526 -11.36436 -11.17624 -11.08326 -11.04622 -10.78658 -10.25218 -9.85048 -9.74169 -9.36836 -9.18385 -9.09417 -8.95459 -8.26254 -6.52619 -6.23789 -3.94684 1.53441 1.85265 2.21060 3.05029 3.06710 3.20660 3.27026 3.32277 3.57337 3.76064 3.87393 3.97886 4.11811 4.18276 4.28136 4.33157 4.48387 4.58584 4.73138 4.79238 4.83269 4.88898 5.04506 5.07781 5.11444 5.13951 5.22896 5.30283 5.35402 5.41295 5.51471 5.53540 5.56453 5.64738 5.75016 5.81721 5.85267 5.92427 6.10186 6.39990 6.53278 6.72147 7.43467 7.57249 7.65124 8.32899 8.55956 9.21533 10.83628 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.030239 B = 0.001625 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.742403 B =17223.370312 C =17432.203562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.079 3.921 4 H 0.103 0.897 5 F -0.188 7.188 6 C 0.499 3.501 7 O -0.519 6.519 8 N -0.608 5.608 9 C 0.134 3.866 10 C -0.158 4.158 11 C -0.117 4.117 12 C 0.152 3.848 13 N -0.735 5.735 14 C 0.531 3.469 15 O -0.517 6.517 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.101 4.101 27 C 0.111 3.889 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 -23.729 -7.172 31.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.040 3.960 4 H 0.121 0.879 5 F -0.169 7.169 6 C 0.284 3.716 7 O -0.393 6.393 8 N -0.343 5.343 9 C 0.012 3.988 10 C -0.178 4.178 11 C -0.118 4.118 12 C 0.029 3.971 13 N -0.390 5.390 14 C 0.318 3.682 15 O -0.391 6.391 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.139 4.139 27 C -0.011 4.011 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.145 0.855 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.496 -22.418 -8.953 31.029 hybrid contribution 0.606 -1.169 2.286 2.638 sum -18.890 -23.587 -6.666 30.945 Atomic orbital electron populations 1.21779 0.93911 1.02824 1.02626 1.21999 0.97463 0.93318 1.05093 1.21761 0.91801 0.96586 0.85860 0.87906 1.92902 1.91989 1.83854 1.48131 1.20948 0.90442 0.80631 0.79530 1.90736 1.66061 1.39695 1.42857 1.48274 1.09072 1.32969 1.43935 1.20730 0.94949 0.85721 0.97413 1.22299 0.95871 0.98238 1.01399 1.20851 0.95344 0.95814 0.99797 1.20341 0.95779 0.93029 0.87967 1.46026 1.53617 1.17792 1.21536 1.20346 0.78441 0.81380 0.88082 1.90712 1.60672 1.39896 1.47796 1.23527 1.02143 1.07898 0.96768 1.85415 1.62432 1.08598 1.26905 1.22867 1.36690 1.04012 1.04899 0.90921 1.24990 0.95875 0.94494 0.98190 1.70015 1.38941 1.04063 1.37229 0.86167 0.79618 0.77638 0.82068 1.20258 1.20734 1.19712 1.20775 0.99321 0.91771 1.02036 1.21772 0.78931 0.98518 1.01874 0.91559 0.92240 0.91815 0.89381 0.89766 0.89357 0.88708 0.85489 0.90932 0.90967 0.76807 0.89227 0.89217 0.92158 0.89825 0.89070 0.90300 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.83 37.16 0.37 -0.26 16 2 C -0.14 -0.78 5.40 -26.73 -0.14 -0.92 16 3 C 0.08 0.51 3.15 -27.88 -0.09 0.43 16 4 H 0.10 0.35 5.95 -51.93 -0.31 0.05 16 5 F -0.19 -1.70 16.75 2.25 0.04 -1.66 16 6 C 0.50 4.45 7.06 -10.99 -0.08 4.37 16 7 O -0.52 -6.50 16.09 5.56 0.09 -6.42 16 8 N -0.61 -4.35 2.97 -174.12 -0.52 -4.87 16 9 C 0.13 0.65 6.19 -5.10 -0.03 0.62 16 10 C -0.16 -1.03 9.47 -35.78 -0.34 -1.36 16 11 C -0.12 -0.93 5.22 -100.99 -0.53 -1.46 16 12 C 0.15 1.66 5.66 -5.20 -0.03 1.63 16 13 N -0.73 -9.07 5.55 -61.47 -0.34 -9.41 16 14 C 0.53 9.54 7.85 -10.99 -0.09 9.45 16 15 O -0.52 -11.51 15.86 5.56 0.09 -11.43 16 16 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 22 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C -0.10 -0.75 5.94 -28.18 -0.17 -0.92 16 27 C 0.11 0.77 6.50 -3.53 -0.02 0.75 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.30 7.94 -51.93 -0.41 -0.11 16 31 H 0.09 0.62 8.05 -51.93 -0.42 0.21 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.33 5.95 -51.92 -0.31 0.02 16 35 H 0.13 0.76 7.73 -52.49 -0.41 0.36 16 36 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 37 H 0.07 0.84 7.78 -51.92 -0.40 0.43 16 38 H 0.40 3.79 8.46 -40.82 -0.35 3.44 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.80 7.09 -51.93 -0.37 0.43 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -36.71 391.76 -8.71 -45.42 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.74 Total: -1.37 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.73 Total: -3.27 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: -0.12 Total: -39.51 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.18 Total: -17.84 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.71 -8.71 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572575335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.185 kcal (2) G-P(sol) polarization free energy of solvation -36.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds