Wall clock time and date at job start Wed Apr 1 2020 02:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47097 * 2 1 4 4 H 1.08995 * 109.46756 * 54.99847 * 3 2 1 5 5 C 1.50692 * 109.46967 * 175.00404 * 3 2 1 6 6 H 1.08004 * 119.99941 * 120.00582 * 5 3 2 7 7 C 1.37880 * 119.99923 * 299.99663 * 5 3 2 8 8 N 1.31512 * 120.00282 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99824 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47387 * 60.00467 * 9 7 5 11 11 H 1.48500 * 109.47358 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47544 * 300.00194 * 9 7 5 13 13 N 1.46502 * 109.47028 * 295.00530 * 3 2 1 14 14 C 1.34774 * 120.00364 * 84.99879 * 13 3 2 15 15 O 1.21360 * 119.99946 * 359.97438 * 14 13 3 16 16 C 1.49344 * 120.00193 * 179.97438 * 14 13 3 17 17 O 1.21380 * 119.99429 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00193 * 180.02562 * 16 14 13 19 19 C 1.39603 * 120.00227 * 185.27848 * 18 16 14 20 20 C 1.39041 * 119.95912 * 33.48334 * 19 18 16 21 21 C 1.37848 * 120.04302 * 179.97438 * 20 19 18 22 22 C 1.39381 * 119.95730 * 359.97438 * 21 20 19 23 23 C 1.48413 * 120.03904 * 179.97438 * 22 21 20 24 24 N 1.34066 * 126.67828 * 0.02958 * 23 22 21 25 25 N 1.28980 * 107.26526 * 179.97438 * 24 23 22 26 26 N 1.28730 * 108.95344 * 0.02562 * 25 24 23 27 27 H 0.97000 * 125.34445 * 179.97438 * 26 25 24 28 28 N 1.28873 * 109.32378 * 359.97438 * 26 25 24 29 29 C 1.39374 * 119.91795 * 0.26087 * 22 21 20 30 30 C 1.37854 * 119.95825 * 359.48631 * 29 22 21 31 31 H 1.09000 * 109.47655 * 59.99286 * 1 2 3 32 32 H 1.08999 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46748 * 299.99727 * 1 2 3 34 34 H 1.09000 * 109.47029 * 240.00631 * 2 1 3 35 35 H 1.08995 * 109.47394 * 120.00026 * 2 1 3 36 36 H 0.96990 * 120.00181 * 180.02562 * 8 7 5 37 37 H 0.97005 * 120.00033 * 264.99983 * 13 3 2 38 38 H 0.97002 * 119.99970 * 5.28028 * 18 16 14 39 39 H 1.07999 * 119.97620 * 359.95785 * 20 19 18 40 40 H 1.07998 * 120.02372 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.02290 * 179.71915 * 29 22 21 42 42 H 1.08003 * 119.97731 * 180.23390 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1237 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8813 1.3816 10 1 6.4995 2.2815 1.3820 11 1 6.3979 0.2167 2.6501 12 1 6.5975 0.1474 0.2347 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6645 -1.3669 15 8 -0.3402 2.6319 -0.4337 16 6 0.0401 3.3327 -2.6428 17 8 0.8153 3.3648 -3.5762 18 7 -1.1770 3.9000 -2.7577 19 6 -1.5886 4.4270 -3.9832 20 6 -1.1756 3.8308 -5.1693 21 6 -1.5814 4.3494 -6.3803 22 6 -2.4068 5.4720 -6.4152 23 6 -2.8443 6.0323 -7.7180 24 7 -2.5286 5.5686 -8.9357 25 7 -3.1077 6.3329 -9.7983 26 7 -3.7651 7.2461 -9.1731 27 1 -4.2882 7.9474 -9.5920 28 7 -3.6193 7.0827 -7.9031 29 6 -2.8158 6.0713 -5.2253 30 6 -2.4122 5.5467 -4.0160 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8294 -0.0611 2.9497 37 1 2.2718 2.1233 -1.9978 38 1 -1.7670 3.9422 -1.9889 39 1 -0.5361 2.9608 -5.1419 40 1 -1.2607 3.8858 -7.3015 41 1 -3.4517 6.9439 -5.2504 42 1 -2.7321 6.0086 -3.0936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609187521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:58 Heat of formation + Delta-G solvation = 82.919865 kcal Electronic energy + Delta-G solvation = -28334.424920 eV Core-core repulsion = 24124.830518 eV Total energy + Delta-G solvation = -4209.594402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.138 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.75001 -40.93453 -39.33957 -38.08476 -35.70478 -35.10908 -34.50427 -33.37214 -32.45106 -31.30216 -31.03046 -29.86944 -27.33899 -25.55465 -25.00577 -23.86278 -23.02386 -22.79678 -21.64982 -20.29237 -19.59909 -19.48626 -18.69793 -17.61321 -17.44138 -16.92284 -16.42087 -15.88648 -15.65716 -15.31995 -14.92745 -14.51484 -14.35080 -14.09571 -14.01968 -13.58834 -13.41555 -13.23407 -12.93736 -12.77194 -12.39900 -12.14911 -11.81799 -11.66165 -11.63241 -11.46798 -11.40561 -11.31586 -11.15708 -11.01340 -10.87700 -10.40335 -10.30039 -10.27838 -9.73612 -9.28500 -9.18176 -9.09616 -8.59237 -8.29424 -8.08187 -6.19803 -4.29743 0.36475 0.85942 1.14734 1.65414 1.91698 2.14336 2.56996 3.23973 3.29009 3.31149 3.39785 3.47988 3.69663 3.89462 3.99448 4.30712 4.66702 4.69464 4.95459 5.01357 5.05827 5.12399 5.14055 5.27016 5.33006 5.76729 5.89619 6.01163 6.04485 6.17169 6.21324 6.28328 6.32931 6.51822 6.65574 6.90344 6.94187 7.07849 7.11565 7.23533 7.44601 7.59789 7.73261 7.81862 7.83578 8.05046 8.38413 8.57165 8.81676 9.37138 10.85474 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.025825 B = 0.001883 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.959498 B =14867.906250 C =15348.330843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.494 3.506 15 O -0.528 6.528 16 C 0.507 3.493 17 O -0.500 6.500 18 N -0.653 5.653 19 C 0.177 3.823 20 C -0.126 4.126 21 C -0.051 4.051 22 C -0.046 4.046 23 C 0.228 3.772 24 N -0.269 5.269 25 N -0.051 5.051 26 N -0.230 5.230 27 H 0.475 0.525 28 N -0.298 5.298 29 C -0.056 4.056 30 C -0.149 4.149 31 H 0.035 0.965 32 H 0.027 0.973 33 H 0.052 0.948 34 H 0.035 0.965 35 H 0.104 0.896 36 H 0.266 0.734 37 H 0.402 0.598 38 H 0.425 0.575 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 11.831 -17.009 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.315 5.315 14 C 0.273 3.727 15 O -0.407 6.407 16 C 0.290 3.710 17 O -0.372 6.372 18 N -0.300 5.300 19 C 0.081 3.919 20 C -0.146 4.146 21 C -0.072 4.072 22 C -0.050 4.050 23 C -0.051 4.051 24 N -0.142 5.142 25 N -0.046 5.046 26 N -0.075 5.075 27 H 0.329 0.671 28 N -0.150 5.150 29 C -0.077 4.077 30 C -0.169 4.169 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.237 0.763 38 H 0.264 0.736 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.220 11.669 -17.403 25.897 hybrid contribution 0.627 0.523 0.283 0.864 sum -14.593 12.192 -17.120 25.587 Atomic orbital electron populations 1.21858 0.98290 0.98469 1.01015 1.21971 0.92649 0.99361 1.02834 1.19032 0.94813 0.89414 0.80023 0.92694 1.21160 0.90267 1.39589 1.06620 0.91793 1.24868 0.98847 0.94567 0.95234 1.69864 1.35387 1.37289 1.09323 0.86460 0.84481 0.78422 0.77501 1.20101 1.21100 1.20044 1.46482 1.13290 1.52413 1.19272 1.19541 0.84598 0.81632 0.86966 1.90752 1.51085 1.59570 1.39279 1.21089 0.81351 0.78611 0.89900 1.90757 1.50335 1.55691 1.40457 1.43317 1.17584 1.57149 1.11924 1.17979 0.95632 0.92726 0.85594 1.21153 1.01777 1.01386 0.90277 1.21040 0.94022 0.93631 0.98493 1.17190 1.02886 0.98326 0.86579 1.23703 0.95708 0.91149 0.94570 1.76111 1.19213 1.20973 0.97906 1.78915 1.05513 0.97545 1.22605 1.47719 1.34070 1.23470 1.02283 0.67116 1.74933 1.20980 1.20197 0.98868 1.20891 0.97814 0.98807 0.90199 1.20843 1.01919 0.95377 0.98761 0.94631 0.95437 0.92927 0.94619 0.87807 0.92358 0.76338 0.73620 0.83733 0.84216 0.84551 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.56 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.41 2.24 -69.08 -0.15 6.25 16 4 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.71 11.29 55.43 0.63 -23.08 16 9 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.67 -13.48 5.01 -55.40 -0.28 -13.75 16 14 C 0.49 9.18 6.46 -11.64 -0.08 9.10 16 15 O -0.53 -10.65 13.62 5.49 0.07 -10.57 16 16 C 0.51 7.97 7.62 -11.64 -0.09 7.88 16 17 O -0.50 -8.50 14.16 5.47 0.08 -8.42 16 18 N -0.65 -8.14 5.32 -10.28 -0.05 -8.20 16 19 C 0.18 2.04 6.27 -83.73 -0.53 1.51 16 20 C -0.13 -1.50 8.64 -39.43 -0.34 -1.84 16 21 C -0.05 -0.55 9.69 -39.30 -0.38 -0.93 16 22 C -0.05 -0.47 5.88 -104.86 -0.62 -1.09 16 23 C 0.23 2.39 7.93 -156.28 -1.24 1.15 16 24 N -0.27 -3.02 12.23 32.15 0.39 -2.62 16 25 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 26 N -0.23 -1.44 7.90 60.35 0.48 -0.96 16 27 H 0.47 0.60 8.96 -340.36 -3.05 -2.45 16 28 N -0.30 -2.58 12.08 32.17 0.39 -2.19 16 29 C -0.06 -0.51 9.69 -39.30 -0.38 -0.89 16 30 C -0.15 -1.37 9.95 -39.43 -0.39 -1.76 16 31 H 0.03 0.70 5.64 -51.93 -0.29 0.41 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 36 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.40 7.64 8.01 -40.82 -0.33 7.32 16 38 H 0.43 4.60 8.29 -40.82 -0.34 4.26 16 39 H 0.14 1.88 6.41 -52.49 -0.34 1.54 16 40 H 0.14 1.38 7.88 -52.49 -0.41 0.97 16 41 H 0.14 0.98 7.88 -52.49 -0.41 0.57 16 42 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -30.84 363.11 -8.54 -39.38 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.09 Total: 8.11 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -4.42 Total: 1.34 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 2.36 Total: -50.46 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.15 Total: -18.99 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.84 -8.54 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609187521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.298 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds