Wall clock time and date at job start Wed Apr 1 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47097 * 2 1 4 4 H 1.08995 * 109.46756 * 54.99847 * 3 2 1 5 5 C 1.50692 * 109.46967 * 175.00404 * 3 2 1 6 6 H 1.08004 * 119.99941 * 120.00582 * 5 3 2 7 7 C 1.37880 * 119.99923 * 299.99663 * 5 3 2 8 8 N 1.31512 * 120.00282 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99824 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47387 * 60.00467 * 9 7 5 11 11 H 1.48500 * 109.47358 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47544 * 300.00194 * 9 7 5 13 13 N 1.46502 * 109.47028 * 295.00530 * 3 2 1 14 14 C 1.34774 * 120.00364 * 84.99879 * 13 3 2 15 15 O 1.21360 * 119.99946 * 359.97438 * 14 13 3 16 16 C 1.49344 * 120.00193 * 179.97438 * 14 13 3 17 17 O 1.21380 * 119.99429 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00193 * 180.02562 * 16 14 13 19 19 C 1.39603 * 120.00227 * 185.27848 * 18 16 14 20 20 C 1.39041 * 119.95912 * 33.48334 * 19 18 16 21 21 C 1.37848 * 120.04302 * 179.97438 * 20 19 18 22 22 C 1.39381 * 119.95730 * 359.97438 * 21 20 19 23 23 C 1.48413 * 120.03904 * 179.97438 * 22 21 20 24 24 N 1.34066 * 126.67828 * 0.02958 * 23 22 21 25 25 N 1.28980 * 107.26526 * 179.97438 * 24 23 22 26 26 N 1.28730 * 108.95344 * 0.02562 * 25 24 23 27 27 H 0.97000 * 125.34445 * 179.97438 * 26 25 24 28 28 N 1.28873 * 109.32378 * 359.97438 * 26 25 24 29 29 C 1.39374 * 119.91795 * 0.26087 * 22 21 20 30 30 C 1.37854 * 119.95825 * 359.48631 * 29 22 21 31 31 H 1.09000 * 109.47655 * 59.99286 * 1 2 3 32 32 H 1.08999 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46748 * 299.99727 * 1 2 3 34 34 H 1.09000 * 109.47029 * 240.00631 * 2 1 3 35 35 H 1.08995 * 109.47394 * 120.00026 * 2 1 3 36 36 H 0.96990 * 120.00181 * 180.02562 * 8 7 5 37 37 H 0.97005 * 120.00033 * 264.99983 * 13 3 2 38 38 H 0.97002 * 119.99970 * 5.28028 * 18 16 14 39 39 H 1.07999 * 119.97620 * 359.95785 * 20 19 18 40 40 H 1.07998 * 120.02372 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.02290 * 179.71915 * 29 22 21 42 42 H 1.08003 * 119.97731 * 180.23390 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1237 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8813 1.3816 10 1 6.4995 2.2815 1.3820 11 1 6.3979 0.2167 2.6501 12 1 6.5975 0.1474 0.2347 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6645 -1.3669 15 8 -0.3402 2.6319 -0.4337 16 6 0.0401 3.3327 -2.6428 17 8 0.8153 3.3648 -3.5762 18 7 -1.1770 3.9000 -2.7577 19 6 -1.5886 4.4270 -3.9832 20 6 -1.1756 3.8308 -5.1693 21 6 -1.5814 4.3494 -6.3803 22 6 -2.4068 5.4720 -6.4152 23 6 -2.8443 6.0323 -7.7180 24 7 -2.5286 5.5686 -8.9357 25 7 -3.1077 6.3329 -9.7983 26 7 -3.7651 7.2461 -9.1731 27 1 -4.2882 7.9474 -9.5920 28 7 -3.6193 7.0827 -7.9031 29 6 -2.8158 6.0713 -5.2253 30 6 -2.4122 5.5467 -4.0160 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8294 -0.0611 2.9497 37 1 2.2718 2.1233 -1.9978 38 1 -1.7670 3.9422 -1.9889 39 1 -0.5361 2.9608 -5.1419 40 1 -1.2607 3.8858 -7.3015 41 1 -3.4517 6.9439 -5.2504 42 1 -2.7321 6.0086 -3.0936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609187521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:57 Heat of formation + Delta-G solvation = 60.648132 kcal Electronic energy + Delta-G solvation = -28335.390695 eV Core-core repulsion = 24124.830518 eV Total energy + Delta-G solvation = -4210.560177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.138 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.44034 -42.13180 -40.54656 -39.32572 -37.21827 -36.34348 -35.25727 -34.35864 -34.09559 -32.80657 -32.08675 -30.75610 -29.15960 -26.74038 -25.76282 -25.18947 -24.35410 -23.75768 -22.64150 -21.71254 -21.16524 -20.28152 -19.98081 -18.73175 -18.14617 -18.12019 -17.79783 -17.27512 -17.03705 -16.90127 -16.17066 -15.80506 -15.57949 -15.12286 -15.06822 -14.81322 -14.59970 -14.39935 -14.14406 -13.80799 -13.73680 -13.47462 -13.20571 -13.16982 -12.95587 -12.68314 -12.64146 -12.57256 -12.37158 -12.22903 -12.15650 -12.09793 -11.95218 -11.58298 -11.19293 -11.09760 -10.63492 -10.51738 -10.01444 -9.82616 -9.17565 -8.17125 -6.33859 -0.46871 0.13103 0.36581 0.42900 1.23620 1.36911 1.44905 1.47823 1.48033 1.56143 2.17770 2.40517 2.66686 2.75636 2.78269 3.12730 3.17271 3.51105 3.90677 3.93934 4.17971 4.26817 4.38671 4.45982 4.50843 4.51090 4.57134 4.73462 4.99734 5.03941 5.07022 5.16901 5.24735 5.30891 5.37861 5.39377 5.41167 5.57702 5.63608 5.68945 5.79199 5.83056 6.00839 6.13342 6.55259 6.68555 6.80026 7.12120 7.13233 7.37938 8.87648 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.025825 B = 0.001883 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.959498 B =14867.906250 C =15348.330843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.017 0.983 5 C -0.554 4.554 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.671 5.671 14 C 0.496 3.504 15 O -0.544 6.544 16 C 0.517 3.483 17 O -0.515 6.515 18 N -0.635 5.635 19 C 0.155 3.845 20 C -0.137 4.137 21 C -0.057 4.057 22 C -0.045 4.045 23 C 0.214 3.786 24 N -0.297 5.297 25 N -0.058 5.058 26 N -0.200 5.200 27 H 0.495 0.505 28 N -0.292 5.292 29 C -0.050 4.050 30 C -0.133 4.133 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.267 0.733 37 H 0.408 0.592 38 H 0.434 0.566 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.160 0.840 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 13.453 -18.267 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.592 4.592 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.320 5.320 14 C 0.275 3.725 15 O -0.424 6.424 16 C 0.299 3.701 17 O -0.390 6.390 18 N -0.282 5.282 19 C 0.060 3.940 20 C -0.157 4.157 21 C -0.077 4.077 22 C -0.049 4.049 23 C -0.066 4.066 24 N -0.170 5.170 25 N -0.053 5.053 26 N -0.051 5.051 27 H 0.354 0.646 28 N -0.144 5.144 29 C -0.071 4.071 30 C -0.153 4.153 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.244 0.756 38 H 0.274 0.726 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.178 0.822 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.329 13.326 -18.707 28.181 hybrid contribution 0.798 0.150 0.568 0.991 sum -15.531 13.476 -18.139 27.420 Atomic orbital electron populations 1.21712 0.96490 0.99683 1.00492 1.21825 0.94207 0.98573 1.01672 1.18637 0.94015 0.89591 0.80360 0.96553 1.21489 0.91295 1.39525 1.06872 0.91406 1.25662 1.03049 0.94233 0.94954 1.69994 1.37005 1.37905 1.09731 0.85471 0.79385 0.78407 0.77529 1.19798 1.20933 1.19310 1.46242 1.14359 1.53083 1.18341 1.19970 0.83676 0.80899 0.87910 1.90739 1.51386 1.59902 1.40333 1.20335 0.82402 0.79074 0.88250 1.90763 1.51118 1.56721 1.40362 1.43102 1.16337 1.55972 1.12801 1.18133 0.97192 0.94087 0.84636 1.21082 1.02124 1.01369 0.91098 1.21032 0.94453 0.94112 0.98130 1.17344 1.02337 0.97965 0.87295 1.23745 0.96530 0.91852 0.94476 1.76098 1.20335 1.22080 0.98441 1.78865 1.05973 0.98031 1.22468 1.47796 1.32704 1.22961 1.01627 0.64625 1.74889 1.20388 1.19465 0.99681 1.21145 0.97429 0.99097 0.89404 1.21105 1.00154 0.93987 1.00074 0.93991 0.93318 0.94474 0.94216 0.90342 0.92391 0.75617 0.72607 0.85318 0.84093 0.82224 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.51 71.98 0.61 -4.63 16 2 C -0.12 -5.81 5.45 30.60 0.17 -5.65 16 3 C 0.28 13.56 2.24 44.25 0.10 13.66 16 4 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16 5 C -0.55 -28.70 8.73 25.60 0.22 -28.48 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -49.88 11.29 21.45 0.24 -49.64 16 9 Si 0.97 41.46 29.54 68.60 2.03 43.49 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 N -0.67 -27.57 5.01 -447.54 -2.24 -29.81 16 14 C 0.50 18.50 6.46 87.24 0.56 19.06 16 15 O -0.54 -22.08 13.62 -3.28 -0.04 -22.13 16 16 C 0.52 16.06 7.62 87.24 0.66 16.73 16 17 O -0.52 -17.49 14.16 -3.34 -0.05 -17.53 16 18 N -0.63 -15.13 5.32 -304.78 -1.62 -16.75 16 19 C 0.15 3.34 6.27 38.29 0.24 3.58 16 20 C -0.14 -3.22 8.64 22.37 0.19 -3.02 16 21 C -0.06 -1.19 9.69 22.45 0.22 -0.97 16 22 C -0.05 -0.86 5.88 -20.02 -0.12 -0.98 16 23 C 0.21 4.11 7.93 137.35 1.09 5.20 16 24 N -0.30 -6.35 12.23 -52.19 -0.64 -6.99 16 25 N -0.06 -0.98 13.47 37.02 0.50 -0.48 16 26 N -0.20 -2.02 7.90 37.02 0.29 -1.73 16 27 H 0.49 -0.12 8.96 -347.53 -3.12 -3.23 16 28 N -0.29 -4.31 12.08 -52.14 -0.63 -4.94 16 29 C -0.05 -0.76 9.69 22.45 0.22 -0.54 16 30 C -0.13 -2.08 9.95 22.37 0.22 -1.86 16 31 H 0.04 1.66 5.64 -2.39 -0.01 1.64 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.04 1.63 7.85 -2.38 -0.02 1.61 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 4.11 5.95 -2.39 -0.01 4.10 16 36 H 0.27 13.94 8.31 -92.72 -0.77 13.17 16 37 H 0.41 15.71 8.01 -92.70 -0.74 14.97 16 38 H 0.43 8.74 8.29 -92.71 -0.77 7.97 16 39 H 0.13 3.42 6.41 -2.91 -0.02 3.40 16 40 H 0.14 2.83 7.88 -2.91 -0.02 2.81 16 41 H 0.16 1.69 7.88 -2.91 -0.02 1.67 16 42 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -67.00 363.11 -0.81 -67.82 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -3.49 Total: 25.00 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 4.84 Total: 13.70 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -4.10 Total: -110.34 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.09 Total: -39.66 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -67.00 -0.81 -67.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609187521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.465 kcal (2) G-P(sol) polarization free energy of solvation -67.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds