Wall clock time and date at job start Wed Apr 1 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47244 * 2 1 4 4 C 1.53010 * 109.46911 * 120.00370 * 2 1 3 5 5 H 1.09004 * 109.46671 * 305.31542 * 4 2 1 6 6 F 1.39895 * 109.46847 * 185.32008 * 4 2 1 7 7 C 1.50693 * 109.47255 * 65.31603 * 4 2 1 8 8 O 1.21283 * 120.00317 * 65.77241 * 7 4 2 9 9 N 1.34777 * 120.00063 * 245.76740 * 7 4 2 10 10 C 1.46497 * 120.00203 * 180.02562 * 9 7 4 11 11 H 1.09004 * 115.51669 * 350.41616 * 10 9 7 12 12 C 1.53001 * 117.44632 * 205.00539 * 10 9 7 13 13 H 1.09002 * 119.53569 * 5.75926 * 12 10 9 14 14 C 1.54390 * 118.12588 * 160.85254 * 12 10 9 15 15 N 1.48147 * 104.61494 * 89.20921 * 14 12 10 16 16 C 1.34776 * 127.83636 * 140.42187 * 15 14 12 17 17 O 1.21279 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99685 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.46989 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00206 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99409 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00118 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00079 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00260 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.46761 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47275 * 240.00258 * 24 22 20 27 27 H 1.48500 * 109.47221 * 119.99964 * 24 22 20 28 28 C 1.48145 * 104.32205 * 320.67264 * 15 14 12 29 29 C 1.53986 * 104.81832 * 39.27910 * 28 15 14 30 30 H 1.09006 * 118.03228 * 115.98195 * 29 28 15 31 31 H 1.09004 * 109.46848 * 300.00023 * 1 2 3 32 32 H 1.08993 * 109.46738 * 59.99678 * 1 2 3 33 33 H 1.08995 * 109.47264 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47190 * 239.99577 * 2 1 3 35 35 H 1.08995 * 109.47328 * 305.01989 * 3 2 1 36 36 H 1.09005 * 109.47518 * 65.01896 * 3 2 1 37 37 H 1.09002 * 109.47217 * 185.01405 * 3 2 1 38 38 H 0.97005 * 119.99956 * 0.02562 * 9 7 4 39 39 H 1.08997 * 110.40580 * 330.42155 * 14 12 10 40 40 H 1.09003 * 110.40394 * 207.99166 * 14 12 10 41 41 H 1.08994 * 109.47305 * 59.99930 * 18 16 15 42 42 H 1.09000 * 109.47259 * 299.99213 * 18 16 15 43 43 H 0.96998 * 120.00197 * 0.02562 * 23 22 20 44 44 H 1.09004 * 110.40244 * 158.11177 * 28 15 14 45 45 H 1.08999 * 110.41238 * 280.54324 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 1 1.6009 -0.2654 2.1367 6 9 3.4336 -0.6164 1.3121 7 6 1.6480 -2.1750 1.1852 8 8 2.1188 -2.8929 0.3284 9 7 0.7744 -2.6775 2.0800 10 6 0.3937 -4.0908 2.0180 11 1 0.7282 -4.6287 1.1309 12 6 -0.9609 -4.4830 2.6114 13 1 -1.6356 -3.7057 2.9703 14 6 -1.5842 -5.8270 2.1769 15 7 -1.0535 -6.8153 3.1446 16 6 -1.7064 -7.8480 3.7136 17 8 -2.8718 -8.0503 3.4456 18 6 -0.9882 -8.7513 4.6827 19 16 -2.1249 -10.0319 5.2696 20 6 -1.0545 -10.9181 6.3529 21 1 -0.0300 -10.6004 6.4787 22 6 -1.5284 -12.0236 7.0455 23 7 -2.7775 -12.4099 6.8933 24 14 -0.3938 -12.9628 8.1946 25 1 0.9496 -12.3297 8.1901 26 1 -0.2797 -14.3706 7.7361 27 1 -0.9495 -12.9340 9.5714 28 6 0.3557 -6.4071 3.3497 29 6 0.3193 -4.8680 3.3814 30 1 0.6059 -4.3677 4.3065 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6052 1.9816 -0.8416 36 1 1.7520 1.9297 0.9315 37 1 3.1263 1.4437 -0.0898 38 1 0.3976 -2.1034 2.7651 39 1 -1.2716 -6.0811 1.1641 40 1 -2.6714 -5.7797 2.2395 41 1 -0.6327 -8.1655 5.5303 42 1 -0.1400 -9.2193 4.1830 43 1 -3.3668 -11.9221 6.2969 44 1 0.7304 -6.7970 4.2962 45 1 0.9760 -6.7532 2.5229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737536734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:20 Heat of formation + Delta-G solvation = -94.279489 kcal Electronic energy + Delta-G solvation = -26849.099158 eV Core-core repulsion = 22715.052054 eV Total energy + Delta-G solvation = -4134.047104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.41398 -40.82592 -39.79634 -38.12936 -36.18644 -35.12338 -32.68553 -32.55092 -29.94829 -28.64833 -28.27192 -27.66798 -25.49911 -24.75678 -22.45745 -21.59390 -20.83064 -20.56807 -19.52853 -18.43378 -18.26595 -17.63063 -16.90028 -16.59220 -16.09876 -15.79470 -15.50234 -15.27877 -15.05228 -14.48863 -14.29319 -14.01407 -13.87159 -13.68594 -13.49204 -13.40743 -13.32864 -12.90600 -12.85828 -12.79476 -12.56020 -12.38797 -12.04791 -11.94776 -11.86506 -11.80690 -11.72593 -11.34471 -11.27669 -10.91760 -10.60950 -10.34996 -10.22231 -9.63334 -9.56944 -9.29957 -9.03637 -8.78678 -8.25160 -6.70574 -6.64703 -4.03091 1.75854 2.13952 2.70665 2.88019 3.07230 3.30260 3.39048 3.39374 3.52894 3.68809 3.76039 3.96509 4.06751 4.12506 4.16818 4.22234 4.36487 4.46162 4.66016 4.76747 4.80068 4.83885 4.89454 5.00970 5.15255 5.15517 5.19983 5.20695 5.26262 5.34005 5.42859 5.45700 5.55848 5.57781 5.60773 5.62621 5.67597 5.74199 5.85879 5.96448 6.12655 6.72021 7.45294 7.52298 7.90724 8.36621 8.47852 9.24521 10.79357 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.001727 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.685203 B =16208.497593 C =16939.871391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.148 4.148 4 C 0.089 3.911 5 H 0.101 0.899 6 F -0.184 7.184 7 C 0.499 3.501 8 O -0.512 6.512 9 N -0.693 5.693 10 C 0.114 3.886 11 H 0.144 0.856 12 C -0.173 4.173 13 H 0.123 0.877 14 C 0.134 3.866 15 N -0.629 5.629 16 C 0.555 3.445 17 O -0.514 6.514 18 C -0.125 4.125 19 S -0.116 6.116 20 C -0.607 4.607 21 H 0.067 0.933 22 C 0.036 3.964 23 N -0.885 5.885 24 Si 1.090 2.910 25 H -0.288 1.288 26 H -0.282 1.282 27 H -0.283 1.283 28 C 0.130 3.870 29 C -0.182 4.182 30 H 0.127 0.873 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.405 0.595 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.278 0.722 44 H 0.091 0.909 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 29.745 -11.824 33.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 C -0.205 4.205 4 C 0.050 3.950 5 H 0.119 0.881 6 F -0.165 7.165 7 C 0.284 3.716 8 O -0.385 6.385 9 N -0.343 5.343 10 C 0.008 3.992 11 H 0.162 0.838 12 C -0.193 4.193 13 H 0.141 0.859 14 C 0.011 3.989 15 N -0.366 5.366 16 C 0.344 3.656 17 O -0.388 6.388 18 C -0.276 4.276 19 S 0.110 5.890 20 C -0.755 4.755 21 H 0.085 0.915 22 C -0.175 4.175 23 N -0.519 5.519 24 Si 0.916 3.084 25 H -0.214 1.214 26 H -0.208 1.208 27 H -0.209 1.209 28 C 0.007 3.993 29 C -0.203 4.203 30 H 0.144 0.856 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.240 0.760 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.980 27.521 -11.775 30.980 hybrid contribution 1.375 1.926 -0.109 2.369 sum 9.355 29.447 -11.884 33.104 Atomic orbital electron populations 1.21857 0.93270 1.02656 1.03160 1.21662 0.97342 0.97536 0.96975 1.21817 1.02061 0.94018 1.02619 1.21602 0.78091 0.93148 1.02206 0.88135 1.92899 1.29266 1.96616 1.97719 1.20981 0.79099 0.90085 0.81469 1.90774 1.52388 1.60306 1.35079 1.45317 1.45577 1.10098 1.33284 1.22416 0.97754 0.81776 0.97282 0.83843 1.24188 0.90954 0.99791 1.04412 0.85922 1.21653 1.00230 0.84570 0.92425 1.49230 1.12211 1.29512 1.45632 1.19971 0.86423 0.79104 0.80088 1.90719 1.16118 1.70463 1.61475 1.23295 1.03789 1.00525 0.99957 1.84832 1.17284 1.30105 1.56765 1.23755 1.00111 1.19111 1.32569 0.91487 1.26061 0.98519 0.94917 0.97998 1.70739 1.05270 1.40535 1.35335 0.83248 0.73883 0.75696 0.75541 1.21382 1.20841 1.20873 1.21683 0.83399 0.91079 1.03181 1.24823 1.03130 0.95519 0.96790 0.85561 0.91888 0.91107 0.92146 0.88810 0.91483 0.92170 0.91659 0.75963 0.90701 0.89015 0.88965 0.88883 0.90924 0.89061 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.01 37.16 0.33 -0.22 16 2 C -0.12 -0.58 2.72 -90.62 -0.25 -0.83 16 3 C -0.15 -0.58 8.94 37.15 0.33 -0.25 16 4 C 0.09 0.52 3.35 -27.88 -0.09 0.43 16 5 H 0.10 0.25 7.93 -51.93 -0.41 -0.16 16 6 F -0.18 -1.61 16.44 2.25 0.04 -1.57 16 7 C 0.50 4.03 5.93 -10.99 -0.07 3.96 16 8 O -0.51 -6.36 16.57 5.55 0.09 -6.27 16 9 N -0.69 -4.00 5.57 -51.65 -0.29 -4.28 16 10 C 0.11 0.84 6.20 -65.70 -0.41 0.44 16 11 H 0.14 1.28 7.40 -51.93 -0.38 0.90 16 12 C -0.17 -1.33 6.91 -89.22 -0.62 -1.94 16 13 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 14 C 0.13 1.46 6.85 -2.41 -0.02 1.44 16 15 N -0.63 -8.65 3.32 -169.55 -0.56 -9.22 16 16 C 0.56 10.49 7.93 -10.99 -0.09 10.40 16 17 O -0.51 -11.70 16.13 5.56 0.09 -11.61 16 18 C -0.12 -2.54 5.14 36.00 0.19 -2.35 16 19 S -0.12 -3.13 19.60 -107.50 -2.11 -5.24 16 20 C -0.61 -17.47 9.50 30.94 0.29 -17.18 16 21 H 0.07 1.85 7.80 -52.48 -0.41 1.44 16 22 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 23 N -0.88 -27.48 13.67 55.49 0.76 -26.72 16 24 Si 1.09 24.99 29.92 -169.99 -5.09 19.91 16 25 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 C 0.13 1.33 6.72 -2.62 -0.02 1.31 16 29 C -0.18 -1.43 7.21 -87.21 -0.63 -2.06 16 30 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.28 7.39 -51.93 -0.38 -0.10 16 34 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.06 0.31 7.84 -51.93 -0.41 -0.10 16 38 H 0.41 1.12 8.67 -40.82 -0.35 0.77 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.10 7.88 -51.93 -0.41 0.69 16 41 H 0.09 1.74 7.94 -51.92 -0.41 1.33 16 42 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 43 H 0.28 8.83 7.13 -40.82 -0.29 8.54 16 44 H 0.09 0.92 7.30 -51.93 -0.38 0.54 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 393.09 15.07 5.92 5.92 Total: -1.00 -37.57 393.09 -9.13 -46.70 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.86 Total: -1.71 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.13 Total: -5.91 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.09 Total: -40.22 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.18 Total: -17.88 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.09 Total: 19.91 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.24 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.57 -9.13 -46.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737536734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.578 kcal (2) G-P(sol) polarization free energy of solvation -37.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds