Wall clock time and date at job start Wed Apr 1 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 110.91436 * 2 1 4 4 C 1.55395 * 111.18505 * 235.94330 * 2 1 3 5 5 N 1.47432 * 104.87077 * 204.98000 * 4 2 1 6 6 C 1.34776 * 125.64770 * 204.16860 * 5 4 2 7 7 O 1.21273 * 120.00068 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99654 * 359.95775 * 6 5 4 9 9 S 1.81010 * 109.46744 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99660 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00310 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99278 * 180.02562 * 10 9 8 13 13 N 1.31629 * 120.00656 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99474 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47149 * 89.99952 * 14 12 10 16 16 H 1.48497 * 109.47062 * 209.99890 * 14 12 10 17 17 H 1.48497 * 109.47432 * 329.99931 * 14 12 10 18 18 C 1.47020 * 108.70212 * 24.13478 * 5 4 2 19 19 C 1.54322 * 107.27463 * 358.94061 * 18 5 4 20 20 H 1.09005 * 110.72027 * 219.27132 * 19 18 5 21 21 N 1.46499 * 110.72180 * 96.17043 * 19 18 5 22 22 C 1.34777 * 119.99665 * 89.12243 * 21 19 18 23 23 O 1.21283 * 119.99990 * 359.71991 * 22 21 19 24 24 C 1.50698 * 119.99538 * 179.72653 * 22 21 19 25 25 C 1.52994 * 115.55433 * 34.32690 * 24 22 21 26 26 F 1.39901 * 109.47418 * 205.58403 * 25 24 22 27 27 C 1.53009 * 117.49493 * 248.61803 * 24 22 21 28 28 C 1.53002 * 117.49578 * 179.97438 * 24 22 21 29 29 H 1.09001 * 109.47109 * 296.09376 * 1 2 3 30 30 H 1.08998 * 109.46795 * 56.09546 * 1 2 3 31 31 H 1.08999 * 109.46997 * 176.09504 * 1 2 3 32 32 H 1.08994 * 110.34430 * 86.12978 * 4 2 1 33 33 H 1.09001 * 110.34983 * 323.83303 * 4 2 1 34 34 H 1.09004 * 109.47501 * 300.00004 * 8 6 5 35 35 H 1.08997 * 109.47157 * 60.00369 * 8 6 5 36 36 H 0.97000 * 120.00004 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.88124 * 239.52389 * 18 5 4 38 38 H 1.08996 * 110.01445 * 118.43155 * 18 5 4 39 39 H 0.97001 * 119.99790 * 268.83956 * 21 19 18 40 40 H 1.09002 * 109.47181 * 325.57915 * 25 24 22 41 41 H 1.08999 * 109.47187 * 85.58029 * 25 24 22 42 42 H 1.08994 * 117.49681 * 359.97438 * 27 24 22 43 43 H 1.08999 * 117.49364 * 145.02337 * 27 24 22 44 44 H 1.08996 * 117.49850 * 214.97548 * 28 24 22 45 45 H 1.08998 * 117.49987 * 359.97397 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0916 -0.8114 -1.2004 5 7 3.4327 -1.2461 -0.7690 6 6 4.4560 -1.5643 -1.5863 7 8 5.5203 -1.9102 -1.1191 8 6 4.2775 -1.4904 -3.0809 9 16 5.8187 -1.9750 -3.8972 10 6 5.3386 -1.8032 -5.5838 11 1 4.3382 -1.4799 -5.8303 12 6 6.2465 -2.0835 -6.5956 13 7 7.4661 -2.4772 -6.2953 14 14 5.7378 -1.9007 -8.3838 15 1 6.0309 -0.5193 -8.8430 16 1 6.4954 -2.8700 -9.2155 17 1 4.2829 -2.1676 -8.5144 18 6 3.4691 -1.2743 0.7005 19 6 2.0861 -0.8081 1.2022 20 1 2.1893 -0.1708 2.0805 21 7 1.2268 -1.9576 1.4961 22 6 1.2386 -2.5109 2.7250 23 8 1.9644 -2.0605 3.5859 24 6 0.3501 -3.6895 3.0291 25 6 0.1278 -4.6646 1.8713 26 9 -1.0896 -5.3304 2.0494 27 6 -0.8126 -3.4660 3.9983 28 6 0.4097 -4.2730 4.4422 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3633 -1.0253 -0.0700 32 1 2.1642 -0.1785 -2.0848 33 1 1.4593 -1.6760 -1.4025 34 1 3.4777 -2.1656 -3.3852 35 1 4.0200 -0.4704 -3.3661 36 1 8.1006 -2.6727 -7.0025 37 1 4.2428 -0.5987 1.0652 38 1 3.6676 -2.2877 1.0494 39 1 0.6463 -2.3178 0.8075 40 1 0.1063 -4.1134 0.9311 41 1 0.9395 -5.3917 1.8477 42 1 -0.9345 -2.4668 4.4161 43 1 -1.7362 -4.0137 3.8109 44 1 0.2899 -5.3513 4.5469 45 1 1.0919 -3.8048 5.1517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071660708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:25 Heat of formation + Delta-G solvation = -92.595756 kcal Electronic energy + Delta-G solvation = -27874.774706 eV Core-core repulsion = 23740.800614 eV Total energy + Delta-G solvation = -4133.974092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.20014 -40.95769 -39.66397 -37.87619 -36.65172 -34.42617 -32.54551 -32.45157 -30.54706 -28.84955 -27.81643 -26.62177 -25.51926 -24.20768 -22.97163 -22.77959 -20.42298 -20.28454 -19.37459 -18.20959 -17.71696 -17.08424 -16.59577 -16.36113 -16.18000 -15.72597 -15.54879 -15.39703 -14.88981 -14.83056 -14.63068 -14.39226 -13.88577 -13.75184 -13.72159 -13.36119 -13.12627 -12.62877 -12.51112 -12.45149 -12.39554 -12.21055 -11.89806 -11.82606 -11.75968 -11.42574 -11.16065 -11.08808 -11.05062 -11.02207 -10.79118 -10.59300 -10.26838 -9.85387 -9.63295 -9.40437 -9.09420 -8.59197 -8.26609 -6.53699 -6.24275 -3.95434 2.00993 2.56812 2.84951 3.01135 3.20079 3.20708 3.23290 3.27969 3.55999 3.82941 3.91433 4.00568 4.11225 4.16265 4.21444 4.28300 4.42484 4.56160 4.70875 4.85343 4.95461 5.02065 5.05518 5.10807 5.15253 5.19416 5.20990 5.23691 5.27800 5.41582 5.42978 5.54369 5.57845 5.63072 5.67553 5.73157 5.78667 5.86380 6.07125 6.07759 6.31943 7.00032 7.56143 7.58699 7.75271 8.32209 8.50196 9.20833 10.83126 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.002268 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.267486 B =12341.925934 C =12595.557034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 H 0.104 0.896 4 C 0.102 3.898 5 N -0.626 5.626 6 C 0.548 3.452 7 O -0.512 6.512 8 C -0.146 4.146 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.100 3.900 19 C 0.137 3.863 20 H 0.111 0.889 21 N -0.716 5.716 22 C 0.558 3.442 23 O -0.528 6.528 24 C -0.211 4.211 25 C 0.102 3.898 26 F -0.207 7.207 27 C -0.138 4.138 28 C -0.134 4.134 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.401 0.599 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.499 1.482 18.034 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 H 0.122 0.878 4 C -0.021 4.021 5 N -0.364 5.364 6 C 0.336 3.664 7 O -0.386 6.386 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.024 4.024 19 C 0.032 3.968 20 H 0.129 0.871 21 N -0.369 5.369 22 C 0.344 3.656 23 O -0.403 6.403 24 C -0.214 4.214 25 C 0.047 3.953 26 F -0.188 7.188 27 C -0.175 4.175 28 C -0.172 4.172 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.237 0.763 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.125 0.875 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.134 1.190 19.218 27.145 hybrid contribution -1.822 0.311 -2.186 2.862 sum -20.956 1.501 17.033 27.047 Atomic orbital electron populations 1.21653 0.93144 1.02101 1.02833 1.22792 0.96770 1.00061 0.93529 0.87827 1.22481 0.83837 0.98103 0.97713 1.48495 1.12403 1.69526 1.05984 1.20059 0.82215 0.76014 0.88095 1.90723 1.25477 1.45372 1.76981 1.23508 1.07882 1.05040 0.93231 1.85448 1.08836 1.87761 1.01337 1.22843 1.01320 1.53125 0.91059 0.90939 1.24998 0.94505 0.94510 0.99577 1.70016 1.04250 1.42447 1.33507 0.86163 0.78624 0.78173 0.82508 1.20250 1.20734 1.19701 1.22293 0.96701 1.02487 0.80898 1.22016 0.88954 0.87078 0.98799 0.87086 1.46004 1.44464 1.33339 1.13079 1.19163 0.81679 0.82763 0.82026 1.90736 1.40468 1.62723 1.46413 1.22185 1.05325 0.99291 0.94640 1.21345 0.83464 0.94011 0.96478 1.92776 1.47090 1.82348 1.96602 1.23095 0.92863 1.02766 0.98792 1.23093 1.00437 1.00525 0.93107 0.91730 0.91444 0.92559 0.89719 0.91501 0.89356 0.89274 0.92144 0.90427 0.91100 0.76251 0.90315 0.89236 0.87859 0.86828 0.87502 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.86 37.16 0.33 -0.33 16 2 C -0.11 -0.76 3.53 -88.20 -0.31 -1.07 16 3 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 4 C 0.10 0.94 6.16 -2.26 -0.01 0.93 16 5 N -0.63 -8.57 3.33 -170.21 -0.57 -9.13 16 6 C 0.55 10.40 7.87 -10.99 -0.09 10.31 16 7 O -0.51 -11.94 16.19 5.56 0.09 -11.85 16 8 C -0.15 -2.92 5.16 36.01 0.19 -2.73 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 14 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C 0.10 1.23 6.61 -3.07 -0.02 1.21 16 19 C 0.14 1.17 3.04 -66.10 -0.20 0.97 16 20 H 0.11 0.99 7.62 -51.93 -0.40 0.59 16 21 N -0.72 -5.41 4.41 -52.03 -0.23 -5.64 16 22 C 0.56 5.24 7.39 -10.99 -0.08 5.16 16 23 O -0.53 -6.86 15.94 5.55 0.09 -6.78 16 24 C -0.21 -1.54 2.61 -155.66 -0.41 -1.95 16 25 C 0.10 0.65 7.59 37.15 0.28 0.93 16 26 F -0.21 -1.62 15.94 2.25 0.04 -1.58 16 27 C -0.14 -0.86 9.63 -26.70 -0.26 -1.12 16 28 C -0.13 -0.95 9.74 -26.70 -0.26 -1.21 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.23 6.44 -51.93 -0.33 -0.11 16 32 H 0.08 0.78 7.47 -51.93 -0.39 0.39 16 33 H 0.07 0.53 8.00 -51.93 -0.42 0.11 16 34 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 35 H 0.09 1.64 7.85 -51.92 -0.41 1.23 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 39 H 0.40 2.25 5.31 -40.82 -0.22 2.04 16 40 H 0.08 0.38 6.38 -51.93 -0.33 0.05 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.11 0.63 7.22 -51.93 -0.38 0.26 16 44 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.11 0.92 7.67 -51.93 -0.40 0.52 16 LS Contribution 386.91 15.07 5.83 5.83 Total: -1.00 -36.22 386.91 -8.50 -44.72 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.61 Total: -0.88 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.64 Total: -1.70 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.06 Total: -40.06 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.18 Total: -18.62 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.22 -8.50 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071660708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.871 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds