Wall clock time and date at job start Wed Apr 1 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 110.91436 * 2 1 4 4 C 1.55395 * 111.18505 * 235.94330 * 2 1 3 5 5 N 1.47432 * 104.87077 * 204.98000 * 4 2 1 6 6 C 1.34776 * 125.64770 * 204.16860 * 5 4 2 7 7 O 1.21273 * 120.00068 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99654 * 359.95775 * 6 5 4 9 9 S 1.81010 * 109.46744 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99660 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00310 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99278 * 180.02562 * 10 9 8 13 13 N 1.31629 * 120.00656 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99474 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47149 * 89.99952 * 14 12 10 16 16 H 1.48497 * 109.47062 * 209.99890 * 14 12 10 17 17 H 1.48497 * 109.47432 * 329.99931 * 14 12 10 18 18 C 1.47020 * 108.70212 * 24.13478 * 5 4 2 19 19 C 1.54322 * 107.27463 * 358.94061 * 18 5 4 20 20 H 1.09005 * 110.72027 * 219.27132 * 19 18 5 21 21 N 1.46499 * 110.72180 * 96.17043 * 19 18 5 22 22 C 1.34777 * 119.99665 * 89.12243 * 21 19 18 23 23 O 1.21283 * 119.99990 * 359.71991 * 22 21 19 24 24 C 1.50698 * 119.99538 * 179.72653 * 22 21 19 25 25 C 1.52994 * 115.55433 * 34.32690 * 24 22 21 26 26 F 1.39901 * 109.47418 * 205.58403 * 25 24 22 27 27 C 1.53009 * 117.49493 * 248.61803 * 24 22 21 28 28 C 1.53002 * 117.49578 * 179.97438 * 24 22 21 29 29 H 1.09001 * 109.47109 * 296.09376 * 1 2 3 30 30 H 1.08998 * 109.46795 * 56.09546 * 1 2 3 31 31 H 1.08999 * 109.46997 * 176.09504 * 1 2 3 32 32 H 1.08994 * 110.34430 * 86.12978 * 4 2 1 33 33 H 1.09001 * 110.34983 * 323.83303 * 4 2 1 34 34 H 1.09004 * 109.47501 * 300.00004 * 8 6 5 35 35 H 1.08997 * 109.47157 * 60.00369 * 8 6 5 36 36 H 0.97000 * 120.00004 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.88124 * 239.52389 * 18 5 4 38 38 H 1.08996 * 110.01445 * 118.43155 * 18 5 4 39 39 H 0.97001 * 119.99790 * 268.83956 * 21 19 18 40 40 H 1.09002 * 109.47181 * 325.57915 * 25 24 22 41 41 H 1.08999 * 109.47187 * 85.58029 * 25 24 22 42 42 H 1.08994 * 117.49681 * 359.97438 * 27 24 22 43 43 H 1.08999 * 117.49364 * 145.02337 * 27 24 22 44 44 H 1.08996 * 117.49850 * 214.97548 * 28 24 22 45 45 H 1.08998 * 117.49987 * 359.97397 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0916 -0.8114 -1.2004 5 7 3.4327 -1.2461 -0.7690 6 6 4.4560 -1.5643 -1.5863 7 8 5.5203 -1.9102 -1.1191 8 6 4.2775 -1.4904 -3.0809 9 16 5.8187 -1.9750 -3.8972 10 6 5.3386 -1.8032 -5.5838 11 1 4.3382 -1.4799 -5.8303 12 6 6.2465 -2.0835 -6.5956 13 7 7.4661 -2.4772 -6.2953 14 14 5.7378 -1.9007 -8.3838 15 1 6.0309 -0.5193 -8.8430 16 1 6.4954 -2.8700 -9.2155 17 1 4.2829 -2.1676 -8.5144 18 6 3.4691 -1.2743 0.7005 19 6 2.0861 -0.8081 1.2022 20 1 2.1893 -0.1708 2.0805 21 7 1.2268 -1.9576 1.4961 22 6 1.2386 -2.5109 2.7250 23 8 1.9644 -2.0605 3.5859 24 6 0.3501 -3.6895 3.0291 25 6 0.1278 -4.6646 1.8713 26 9 -1.0896 -5.3304 2.0494 27 6 -0.8126 -3.4660 3.9983 28 6 0.4097 -4.2730 4.4422 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3633 -1.0253 -0.0700 32 1 2.1642 -0.1785 -2.0848 33 1 1.4593 -1.6760 -1.4025 34 1 3.4777 -2.1656 -3.3852 35 1 4.0200 -0.4704 -3.3661 36 1 8.1006 -2.6727 -7.0025 37 1 4.2428 -0.5987 1.0652 38 1 3.6676 -2.2877 1.0494 39 1 0.6463 -2.3178 0.8075 40 1 0.1063 -4.1134 0.9311 41 1 0.9395 -5.3917 1.8477 42 1 -0.9345 -2.4668 4.4161 43 1 -1.7362 -4.0137 3.8109 44 1 0.2899 -5.3513 4.5469 45 1 1.0919 -3.8048 5.1517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071660708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:25 Heat of formation + Delta-G solvation = -116.870243 kcal Electronic energy + Delta-G solvation = -27875.827326 eV Core-core repulsion = 23740.800614 eV Total energy + Delta-G solvation = -4135.026713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.74522 -41.80002 -40.72574 -39.00831 -37.35267 -35.40224 -34.58789 -33.30923 -31.77306 -29.79491 -28.65104 -27.66384 -27.32669 -25.02361 -23.63766 -23.49354 -21.14228 -20.99655 -20.68138 -19.61397 -18.79057 -18.08882 -17.80046 -17.00903 -16.89081 -16.87838 -16.61863 -16.57320 -16.26633 -15.89109 -15.63347 -15.39923 -15.24771 -14.67051 -14.61776 -14.36462 -14.24934 -13.83847 -13.50756 -13.38724 -13.18351 -13.12964 -13.03502 -12.88894 -12.73696 -12.61323 -12.47616 -12.36565 -11.99325 -11.80921 -11.70097 -11.57393 -11.15124 -11.14431 -11.05226 -11.00792 -10.34084 -10.27915 -9.77784 -8.69091 -8.34759 -6.13838 1.21579 1.29877 1.43107 1.44834 1.52122 1.55991 1.88787 2.04773 2.26968 2.63688 2.99640 3.17871 3.25422 3.30086 3.40438 3.46335 3.55453 3.76646 3.78187 3.88840 4.05500 4.16068 4.18488 4.23461 4.28193 4.42126 4.46431 4.54366 4.61721 4.66672 4.67183 4.71592 4.72201 4.79398 4.91262 5.04513 5.14098 5.15630 5.22212 5.33770 5.40759 5.41627 6.19608 6.31415 6.35107 7.04789 7.06300 7.07219 8.74523 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.002268 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.267486 B =12341.925934 C =12595.557034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.111 0.889 4 C 0.089 3.911 5 N -0.613 5.613 6 C 0.545 3.455 7 O -0.569 6.569 8 C -0.117 4.117 9 S -0.157 6.157 10 C -0.543 4.543 11 H 0.085 0.915 12 C 0.012 3.988 13 N -0.913 5.913 14 Si 1.000 3.000 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.255 1.255 18 C 0.098 3.902 19 C 0.147 3.853 20 H 0.111 0.889 21 N -0.703 5.703 22 C 0.557 3.443 23 O -0.569 6.569 24 C -0.214 4.214 25 C 0.102 3.898 26 F -0.213 7.213 27 C -0.123 4.123 28 C -0.143 4.143 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.413 0.587 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.340 2.259 16.947 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.129 0.871 4 C -0.032 4.032 5 N -0.348 5.348 6 C 0.333 3.667 7 O -0.448 6.448 8 C -0.268 4.268 9 S 0.071 5.929 10 C -0.690 4.690 11 H 0.104 0.896 12 C -0.193 4.193 13 N -0.549 5.549 14 Si 0.822 3.178 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.179 1.179 18 C -0.026 4.026 19 C 0.041 3.959 20 H 0.129 0.871 21 N -0.356 5.356 22 C 0.344 3.656 23 O -0.448 6.448 24 C -0.218 4.218 25 C 0.047 3.953 26 F -0.195 7.195 27 C -0.160 4.160 28 C -0.180 4.180 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.253 0.747 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.136 0.864 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.067 1.982 18.131 29.406 hybrid contribution -0.688 0.090 -1.702 1.838 sum -23.755 2.073 16.428 28.957 Atomic orbital electron populations 1.21664 0.90810 1.03181 1.03697 1.22763 0.98390 0.99511 0.90741 0.87102 1.22936 0.81516 0.99649 0.99126 1.48377 1.12934 1.67225 1.06265 1.19883 0.82569 0.76127 0.88115 1.90701 1.28013 1.48389 1.77649 1.23290 1.03819 1.06371 0.93278 1.85691 1.15237 1.88702 1.03308 1.23178 1.01910 1.52955 0.90990 0.89649 1.26160 0.94318 0.93803 1.04997 1.70192 1.05757 1.43774 1.35196 0.84932 0.78950 0.78353 0.75614 1.19320 1.20481 1.17913 1.22392 0.99059 1.01218 0.79942 1.21880 0.87112 0.87373 0.99497 0.87089 1.45888 1.43929 1.32836 1.12936 1.19511 0.81237 0.82908 0.81916 1.90724 1.42250 1.64047 1.47757 1.22156 1.05610 0.98826 0.95205 1.21425 0.83177 0.93983 0.96697 1.92764 1.47526 1.82502 1.96660 1.23139 0.92701 1.02755 0.97440 1.23120 1.00893 1.01236 0.92760 0.91221 0.90229 0.91451 0.88800 0.89135 0.87200 0.87153 0.92023 0.91715 0.93114 0.74738 0.88446 0.89031 0.87732 0.85673 0.86384 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 8.86 71.98 0.64 -0.06 16 2 C -0.09 -0.97 3.53 -9.23 -0.03 -1.00 16 3 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.09 1.35 6.16 87.02 0.54 1.89 16 5 N -0.61 -16.08 3.33 -810.82 -2.70 -18.78 16 6 C 0.54 20.74 7.87 87.66 0.69 21.43 16 7 O -0.57 -27.69 16.19 -3.01 -0.05 -27.74 16 8 C -0.12 -4.56 5.16 71.24 0.37 -4.20 16 9 S -0.16 -8.69 20.57 -56.49 -1.16 -9.86 16 10 C -0.54 -30.50 9.50 67.95 0.65 -29.85 16 11 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.67 5.49 84.86 0.47 1.13 16 13 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 14 Si 1.00 42.88 29.55 68.60 2.03 44.91 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 18 C 0.10 2.39 6.61 86.73 0.57 2.96 16 19 C 0.15 2.26 3.04 46.18 0.14 2.40 16 20 H 0.11 1.83 7.62 -2.38 -0.02 1.81 16 21 N -0.70 -9.13 4.41 -436.91 -1.93 -11.06 16 22 C 0.56 9.86 7.39 87.66 0.65 10.51 16 23 O -0.57 -14.85 15.94 -3.04 -0.05 -14.90 16 24 C -0.21 -2.82 2.61 -52.93 -0.14 -2.96 16 25 C 0.10 1.07 7.59 71.98 0.55 1.62 16 26 F -0.21 -2.83 15.94 44.97 0.72 -2.12 16 27 C -0.12 -1.32 9.63 30.61 0.29 -1.03 16 28 C -0.14 -1.90 9.74 30.61 0.30 -1.61 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.07 0.22 6.44 -2.39 -0.02 0.20 16 32 H 0.09 1.34 7.47 -2.39 -0.02 1.33 16 33 H 0.09 1.03 8.00 -2.39 -0.02 1.01 16 34 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 35 H 0.11 3.84 7.85 -2.40 -0.02 3.82 16 36 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.05 1.45 8.04 -2.39 -0.02 1.44 16 39 H 0.41 3.26 5.31 -92.71 -0.49 2.76 16 40 H 0.10 0.63 6.38 -2.39 -0.02 0.61 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.13 1.09 7.22 -2.39 -0.02 1.07 16 44 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.10 1.62 7.67 -2.39 -0.02 1.61 16 Total: -1.00 -83.00 386.91 3.34 -79.66 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.52 Total: 14.32 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.67 Total: 1.23 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -4.34 Total: -85.52 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.10 Total: -42.63 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.72 Total: -2.12 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.86 kcal Total: -83.00 3.34 -79.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071660708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.211 kcal (2) G-P(sol) polarization free energy of solvation -83.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds