Wall clock time and date at job start Wed Apr 1 2020 02:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00323 * 2 1 4 4 H 1.48495 * 109.47142 * 269.99989 * 3 2 1 5 5 H 1.48499 * 109.47245 * 30.00181 * 3 2 1 6 6 H 1.48500 * 109.46962 * 150.00073 * 3 2 1 7 7 C 1.37879 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00391 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99845 * 179.97438 * 7 2 1 10 10 N 1.46508 * 109.47225 * 179.97438 * 9 7 2 11 11 C 1.46490 * 120.00169 * 263.66583 * 10 9 7 12 12 C 1.53005 * 109.47443 * 274.84649 * 11 10 9 13 13 C 1.52996 * 117.49826 * 243.62437 * 12 11 10 14 14 C 1.52993 * 117.50100 * 175.00034 * 12 11 10 15 15 C 1.34774 * 119.99734 * 83.66287 * 10 9 7 16 16 O 1.21353 * 120.00140 * 174.61946 * 15 10 9 17 17 C 1.49353 * 120.00065 * 354.62424 * 15 10 9 18 18 O 1.21382 * 120.00027 * 0.21309 * 17 15 10 19 19 N 1.34777 * 120.00237 * 180.20558 * 17 15 10 20 20 C 1.39720 * 120.00075 * 184.88905 * 19 17 15 21 21 C 1.39090 * 120.09078 * 326.49707 * 20 19 17 22 22 C 1.38111 * 119.67885 * 180.02562 * 21 20 19 23 23 C 1.38027 * 120.43266 * 0.18301 * 22 21 20 24 24 C 1.39320 * 120.40447 * 0.03466 * 23 22 21 25 25 C 1.38378 * 120.08461 * 146.52279 * 20 19 17 26 26 C 1.51922 * 132.11885 * 358.82294 * 25 20 19 27 27 C 1.54707 * 101.78335 * 195.83208 * 26 25 20 28 28 O 1.36150 * 129.85075 * 179.51744 * 24 23 22 29 29 H 0.97007 * 119.99665 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47113 * 60.00536 * 9 7 2 31 31 H 1.08993 * 109.47559 * 299.99949 * 9 7 2 32 32 H 1.09001 * 109.47477 * 34.84304 * 11 10 9 33 33 H 1.09003 * 109.47565 * 154.84509 * 11 10 9 34 34 H 1.09007 * 115.54563 * 29.32762 * 12 11 10 35 35 H 1.09003 * 117.50276 * 359.97438 * 13 12 11 36 36 H 1.09006 * 117.49783 * 145.01478 * 13 12 11 37 37 H 1.09007 * 117.50068 * 214.97639 * 14 12 11 38 38 H 1.08999 * 117.50347 * 359.97438 * 14 12 11 39 39 H 0.97001 * 119.99483 * 4.89240 * 19 17 15 40 40 H 1.07998 * 120.16236 * 0.03068 * 21 20 19 41 41 H 1.08004 * 119.78181 * 180.21197 * 22 21 20 42 42 H 1.08010 * 119.79295 * 180.02562 * 23 22 21 43 43 H 1.09001 * 110.90542 * 77.76754 * 26 25 20 44 44 H 1.09001 * 111.10849 * 313.98463 * 26 25 20 45 45 H 1.09000 * 110.75344 * 216.53551 * 27 26 25 46 46 H 1.09002 * 110.75677 * 93.36260 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 3.9997 -2.5755 -0.0010 11 6 4.3763 -3.2192 1.2599 12 6 5.8255 -2.8654 1.6003 13 6 6.8397 -4.0099 1.6471 14 6 6.3732 -3.3476 2.9450 15 6 4.1024 -3.2540 -1.1610 16 8 4.5976 -4.3618 -1.1742 17 6 3.6068 -2.6424 -2.4302 18 8 3.1150 -1.5327 -2.4177 19 7 3.7057 -3.3226 -3.5896 20 6 3.3369 -2.7124 -4.7912 21 6 2.2938 -1.7926 -4.8148 22 6 1.9360 -1.1949 -6.0074 23 6 2.6040 -1.5075 -7.1741 24 6 3.6474 -2.4307 -7.1636 25 6 4.0081 -3.0220 -5.9610 26 6 5.1776 -3.9475 -6.2502 27 6 5.6226 -3.4658 -7.6514 28 8 4.4221 -2.8833 -8.1875 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6806 0.8889 31 1 3.8745 -0.6802 -0.8911 32 1 3.7202 -2.8691 2.0568 33 1 4.2804 -4.3002 1.1589 34 1 6.1724 -1.8997 1.2325 35 1 6.4746 -5.0150 1.4358 36 1 7.8543 -3.7974 1.3099 37 1 7.0809 -2.6993 3.4618 38 1 5.7011 -3.9165 3.5874 39 1 4.0328 -4.2358 -3.5897 40 1 1.7663 -1.5468 -3.9050 41 1 1.1286 -0.4778 -6.0271 42 1 2.3159 -1.0336 -8.1009 43 1 4.8523 -4.9874 -6.2809 44 1 5.9755 -3.8118 -5.5201 45 1 5.9499 -4.3067 -8.2630 46 1 6.4123 -2.7189 -7.5704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361905708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:00 Heat of formation + Delta-G solvation = -20.206516 kcal Electronic energy + Delta-G solvation = -30482.032973 eV Core-core repulsion = 26339.214267 eV Total energy + Delta-G solvation = -4142.818705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25597 -40.32077 -38.67287 -37.20533 -36.91305 -35.33810 -34.16208 -32.38798 -32.16734 -29.57709 -28.86598 -28.48748 -27.05408 -24.28099 -23.34458 -22.60969 -22.28228 -22.09449 -21.22341 -20.36719 -19.31478 -17.93590 -17.28114 -17.04693 -16.59874 -16.42830 -16.23444 -15.46599 -15.37546 -15.29592 -14.92431 -14.59499 -14.27008 -14.02639 -13.54401 -13.50233 -13.37400 -13.07623 -12.86945 -12.57737 -12.55065 -12.21854 -12.09364 -11.86675 -11.64295 -11.53388 -11.40338 -11.22587 -11.02361 -10.96463 -10.70671 -10.49798 -10.41251 -10.16324 -10.04137 -9.77771 -9.54449 -8.78204 -8.52633 -8.26545 -8.02260 -7.84472 -6.08902 -4.06297 1.24417 1.46360 2.06150 2.74778 3.21487 3.29811 3.34400 3.38010 3.65319 3.81435 3.91956 4.05043 4.35689 4.40403 4.50948 4.80965 4.84217 4.90235 5.02681 5.07257 5.14584 5.22132 5.25580 5.30010 5.43635 5.56120 5.57485 5.63984 5.70075 5.71396 5.79449 5.86505 5.98188 6.02070 6.21585 6.24679 6.31128 6.37766 6.47277 6.48475 6.67153 6.78369 6.88718 7.08080 7.26452 7.43005 7.54182 7.83203 8.16815 8.42704 8.55319 8.90945 9.51468 11.04279 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009331 B = 0.004121 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.075099 B = 6793.222046 C = 9149.968192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.082 3.918 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.515 4.515 8 H 0.072 0.928 9 C 0.199 3.801 10 N -0.552 5.552 11 C 0.146 3.854 12 C -0.165 4.165 13 C -0.174 4.174 14 C -0.177 4.177 15 C 0.512 3.488 16 O -0.552 6.552 17 C 0.492 3.508 18 O -0.434 6.434 19 N -0.659 5.659 20 C 0.206 3.794 21 C -0.147 4.147 22 C -0.066 4.066 23 C -0.157 4.157 24 C 0.117 3.883 25 C -0.210 4.210 26 C -0.105 4.105 27 C 0.054 3.946 28 O -0.306 6.306 29 H 0.264 0.736 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.416 0.584 40 H 0.157 0.843 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.763 -6.715 -8.368 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.121 4.121 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.078 3.922 10 N -0.281 5.281 11 C 0.023 3.977 12 C -0.184 4.184 13 C -0.211 4.211 14 C -0.215 4.215 15 C 0.295 3.705 16 O -0.432 6.432 17 C 0.274 3.726 18 O -0.301 6.301 19 N -0.307 5.307 20 C 0.111 3.889 21 C -0.167 4.167 22 C -0.084 4.084 23 C -0.176 4.176 24 C 0.071 3.929 25 C -0.213 4.213 26 C -0.142 4.142 27 C -0.021 4.021 28 O -0.221 6.221 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.253 0.747 40 H 0.175 0.825 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.122 0.878 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.481 -6.301 -8.471 15.597 hybrid contribution 0.562 0.497 0.137 0.762 sum 12.043 -5.804 -8.334 15.753 Atomic orbital electron populations 1.69889 1.06167 1.26892 1.50541 1.24703 0.94562 0.98626 0.94197 0.86912 0.80148 0.84099 0.78857 1.19770 1.21337 1.19261 1.21062 0.88348 0.94717 1.51196 0.90974 1.20323 0.96713 0.76659 0.98462 1.47847 1.59572 1.16072 1.04632 1.21072 0.92579 0.98309 0.85699 1.22745 0.95520 0.99228 1.00928 1.22982 0.99113 0.97873 1.01112 1.22921 1.03733 1.04083 0.90730 1.19691 0.80315 0.85448 0.85071 1.90659 1.45790 1.20137 1.86610 1.20376 0.80981 0.86544 0.84704 1.90921 1.36701 1.17938 1.84575 1.43182 1.65389 1.17721 1.04397 1.16938 0.93231 0.95412 0.83352 1.21553 0.96463 0.98487 1.00183 1.20831 0.98471 0.98259 0.90871 1.20222 0.98219 0.99673 0.99493 1.19207 0.93699 0.94120 0.85841 1.20435 1.02377 1.04739 0.93791 1.21749 0.96103 0.99157 0.97193 1.23770 0.86499 0.98029 0.93808 1.86819 1.30771 1.74165 1.30308 0.92631 0.95082 0.92674 0.89191 0.89973 0.87739 0.88574 0.89379 0.89000 0.88680 0.74732 0.82519 0.84644 0.85632 0.89346 0.89206 0.87794 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.51 -13.80 8.34 -34.44 -0.29 -14.09 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.20 4.51 3.85 -5.19 -0.02 4.49 16 10 N -0.55 -11.04 2.47 -175.61 -0.43 -11.48 16 11 C 0.15 2.47 5.68 -4.04 -0.02 2.44 16 12 C -0.16 -2.39 6.01 -90.62 -0.54 -2.94 16 13 C -0.17 -2.19 10.18 -26.73 -0.27 -2.46 16 14 C -0.18 -2.07 10.25 -26.74 -0.27 -2.35 16 15 C 0.51 10.13 7.67 -11.63 -0.09 10.04 16 16 O -0.55 -10.75 16.04 5.49 0.09 -10.66 16 17 C 0.49 9.63 7.58 -11.63 -0.09 9.54 16 18 O -0.43 -9.73 9.45 5.47 0.05 -9.68 16 19 N -0.66 -10.71 5.30 -10.39 -0.06 -10.76 16 20 C 0.21 3.31 6.31 -83.90 -0.53 2.78 16 21 C -0.15 -2.52 8.73 -39.31 -0.34 -2.86 16 22 C -0.07 -0.95 10.01 -39.71 -0.40 -1.35 16 23 C -0.16 -2.12 10.06 -39.26 -0.39 -2.52 16 24 C 0.12 1.64 7.03 -38.98 -0.27 1.36 16 25 C -0.21 -2.93 6.20 -103.76 -0.64 -3.57 16 26 C -0.10 -1.07 7.11 -26.38 -0.19 -1.26 16 27 C 0.05 0.50 8.00 38.06 0.30 0.80 16 28 O -0.31 -3.93 11.11 -20.22 -0.22 -4.15 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.03 0.69 7.08 -51.93 -0.37 0.32 16 31 H 0.06 1.30 5.27 -51.93 -0.27 1.03 16 32 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 33 H 0.08 1.36 7.09 -51.93 -0.37 0.99 16 34 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 35 H 0.10 1.23 8.03 -51.93 -0.42 0.81 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.42 5.87 8.29 -40.82 -0.34 5.53 16 40 H 0.16 3.15 6.10 -52.49 -0.32 2.83 16 41 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 42 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -31.64 382.63 -9.19 -40.83 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.32 Total: 9.41 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -4.16 Total: 0.24 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.28 Total: -48.08 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.08 Total: -24.50 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.64 -9.19 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361905708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.622 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds