Wall clock time and date at job start Wed Apr 1 2020 02:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00323 * 2 1 4 4 H 1.48495 * 109.47142 * 269.99989 * 3 2 1 5 5 H 1.48499 * 109.47245 * 30.00181 * 3 2 1 6 6 H 1.48500 * 109.46962 * 150.00073 * 3 2 1 7 7 C 1.37879 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00391 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99845 * 179.97438 * 7 2 1 10 10 N 1.46508 * 109.47225 * 179.97438 * 9 7 2 11 11 C 1.46490 * 120.00169 * 263.66583 * 10 9 7 12 12 C 1.53005 * 109.47443 * 274.84649 * 11 10 9 13 13 C 1.52996 * 117.49826 * 243.62437 * 12 11 10 14 14 C 1.52993 * 117.50100 * 175.00034 * 12 11 10 15 15 C 1.34774 * 119.99734 * 83.66287 * 10 9 7 16 16 O 1.21353 * 120.00140 * 174.61946 * 15 10 9 17 17 C 1.49353 * 120.00065 * 354.62424 * 15 10 9 18 18 O 1.21382 * 120.00027 * 0.21309 * 17 15 10 19 19 N 1.34777 * 120.00237 * 180.20558 * 17 15 10 20 20 C 1.39720 * 120.00075 * 184.88905 * 19 17 15 21 21 C 1.39090 * 120.09078 * 326.49707 * 20 19 17 22 22 C 1.38111 * 119.67885 * 180.02562 * 21 20 19 23 23 C 1.38027 * 120.43266 * 0.18301 * 22 21 20 24 24 C 1.39320 * 120.40447 * 0.03466 * 23 22 21 25 25 C 1.38378 * 120.08461 * 146.52279 * 20 19 17 26 26 C 1.51922 * 132.11885 * 358.82294 * 25 20 19 27 27 C 1.54707 * 101.78335 * 195.83208 * 26 25 20 28 28 O 1.36150 * 129.85075 * 179.51744 * 24 23 22 29 29 H 0.97007 * 119.99665 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47113 * 60.00536 * 9 7 2 31 31 H 1.08993 * 109.47559 * 299.99949 * 9 7 2 32 32 H 1.09001 * 109.47477 * 34.84304 * 11 10 9 33 33 H 1.09003 * 109.47565 * 154.84509 * 11 10 9 34 34 H 1.09007 * 115.54563 * 29.32762 * 12 11 10 35 35 H 1.09003 * 117.50276 * 359.97438 * 13 12 11 36 36 H 1.09006 * 117.49783 * 145.01478 * 13 12 11 37 37 H 1.09007 * 117.50068 * 214.97639 * 14 12 11 38 38 H 1.08999 * 117.50347 * 359.97438 * 14 12 11 39 39 H 0.97001 * 119.99483 * 4.89240 * 19 17 15 40 40 H 1.07998 * 120.16236 * 0.03068 * 21 20 19 41 41 H 1.08004 * 119.78181 * 180.21197 * 22 21 20 42 42 H 1.08010 * 119.79295 * 180.02562 * 23 22 21 43 43 H 1.09001 * 110.90542 * 77.76754 * 26 25 20 44 44 H 1.09001 * 111.10849 * 313.98463 * 26 25 20 45 45 H 1.09000 * 110.75344 * 216.53551 * 27 26 25 46 46 H 1.09002 * 110.75677 * 93.36260 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 3.9997 -2.5755 -0.0010 11 6 4.3763 -3.2192 1.2599 12 6 5.8255 -2.8654 1.6003 13 6 6.8397 -4.0099 1.6471 14 6 6.3732 -3.3476 2.9450 15 6 4.1024 -3.2540 -1.1610 16 8 4.5976 -4.3618 -1.1742 17 6 3.6068 -2.6424 -2.4302 18 8 3.1150 -1.5327 -2.4177 19 7 3.7057 -3.3226 -3.5896 20 6 3.3369 -2.7124 -4.7912 21 6 2.2938 -1.7926 -4.8148 22 6 1.9360 -1.1949 -6.0074 23 6 2.6040 -1.5075 -7.1741 24 6 3.6474 -2.4307 -7.1636 25 6 4.0081 -3.0220 -5.9610 26 6 5.1776 -3.9475 -6.2502 27 6 5.6226 -3.4658 -7.6514 28 8 4.4221 -2.8833 -8.1875 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6806 0.8889 31 1 3.8745 -0.6802 -0.8911 32 1 3.7202 -2.8691 2.0568 33 1 4.2804 -4.3002 1.1589 34 1 6.1724 -1.8997 1.2325 35 1 6.4746 -5.0150 1.4358 36 1 7.8543 -3.7974 1.3099 37 1 7.0809 -2.6993 3.4618 38 1 5.7011 -3.9165 3.5874 39 1 4.0328 -4.2358 -3.5897 40 1 1.7663 -1.5468 -3.9050 41 1 1.1286 -0.4778 -6.0271 42 1 2.3159 -1.0336 -8.1009 43 1 4.8523 -4.9874 -6.2809 44 1 5.9755 -3.8118 -5.5201 45 1 5.9499 -4.3067 -8.2630 46 1 6.4123 -2.7189 -7.5704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361905708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:59 Heat of formation + Delta-G solvation = -39.703210 kcal Electronic energy + Delta-G solvation = -30482.878413 eV Core-core repulsion = 26339.214267 eV Total energy + Delta-G solvation = -4143.664145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.43446 -41.69106 -40.05568 -38.34624 -38.28702 -36.78654 -35.59126 -34.43282 -33.17390 -30.71864 -30.31309 -29.94738 -28.55177 -25.69799 -24.54161 -24.15355 -23.43357 -23.15623 -22.34488 -21.59395 -20.74469 -19.23876 -19.08511 -18.65346 -17.94578 -17.64020 -17.25451 -16.97997 -16.65906 -16.50965 -16.25306 -16.00236 -15.88180 -15.39955 -15.07457 -14.70983 -14.51936 -14.36437 -14.19244 -14.01697 -13.92454 -13.62036 -13.51887 -13.18594 -12.96215 -12.69957 -12.59974 -12.47634 -12.33410 -12.23640 -12.17814 -12.04168 -11.96300 -11.69898 -11.32384 -11.30547 -10.86496 -10.75174 -10.26840 -9.67056 -9.37225 -9.07551 -8.24692 -6.25716 -0.01792 0.28818 0.59800 1.29951 1.37894 1.41364 1.46367 2.15081 2.28105 2.37496 2.43797 2.70751 2.94608 3.13000 3.31699 3.44769 3.64300 3.79985 4.00219 4.00702 4.10939 4.14773 4.19076 4.33042 4.33903 4.46183 4.49491 4.55064 4.69865 4.70628 4.74386 4.81811 4.82764 4.87511 4.96181 5.03681 5.14618 5.15807 5.24928 5.29614 5.34675 5.42761 5.48988 5.51124 5.62903 6.02314 6.09610 6.16792 6.36591 6.70167 6.71507 6.98982 7.35600 8.92248 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009331 B = 0.004121 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.075099 B = 6793.222046 C = 9149.968192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.240 1.240 7 C -0.506 4.506 8 H 0.027 0.973 9 C 0.213 3.787 10 N -0.558 5.558 11 C 0.144 3.856 12 C -0.187 4.187 13 C -0.169 4.169 14 C -0.155 4.155 15 C 0.510 3.490 16 O -0.548 6.548 17 C 0.490 3.510 18 O -0.471 6.471 19 N -0.642 5.642 20 C 0.185 3.815 21 C -0.173 4.173 22 C -0.068 4.068 23 C -0.152 4.152 24 C 0.113 3.887 25 C -0.208 4.208 26 C -0.104 4.104 27 C 0.051 3.949 28 O -0.314 6.314 29 H 0.264 0.736 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.426 0.574 40 H 0.118 0.882 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.138 0.862 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.877 -7.094 -9.318 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.163 1.163 7 C -0.544 4.544 8 H 0.045 0.955 9 C 0.091 3.909 10 N -0.287 5.287 11 C 0.022 3.978 12 C -0.206 4.206 13 C -0.206 4.206 14 C -0.192 4.192 15 C 0.292 3.708 16 O -0.429 6.429 17 C 0.272 3.728 18 O -0.342 6.342 19 N -0.290 5.290 20 C 0.091 3.909 21 C -0.194 4.194 22 C -0.087 4.087 23 C -0.171 4.171 24 C 0.067 3.933 25 C -0.211 4.211 26 C -0.141 4.141 27 C -0.023 4.023 28 O -0.228 6.228 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.265 0.735 40 H 0.136 0.864 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.156 0.844 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.640 -6.740 -9.428 18.672 hybrid contribution -0.412 0.449 0.309 0.683 sum 14.228 -6.291 -9.119 18.032 Atomic orbital electron populations 1.70037 1.08070 1.27821 1.52728 1.25520 0.95259 1.02413 0.94030 0.85918 0.80009 0.79465 0.78765 1.20271 1.20888 1.16307 1.21171 0.90520 0.92838 1.49901 0.95482 1.19982 0.93766 0.78445 0.98658 1.47855 1.59635 1.15338 1.05878 1.21219 0.94409 0.97978 0.84152 1.22586 0.94180 0.99783 1.04062 1.23035 0.98996 0.96883 1.01650 1.23041 1.03152 1.03195 0.89839 1.19787 0.80275 0.85494 0.85235 1.90642 1.45757 1.19811 1.86673 1.20468 0.80618 0.86298 0.85456 1.90908 1.38645 1.19506 1.85131 1.42999 1.64342 1.17872 1.03809 1.17016 0.93954 0.96138 0.83824 1.21355 0.97743 1.00471 0.99797 1.20971 0.98996 0.98310 0.90403 1.20481 0.97527 0.99199 0.99856 1.19423 0.93801 0.93874 0.86217 1.20739 1.02873 1.04823 0.92706 1.21910 0.94820 0.99242 0.98154 1.24107 0.85351 0.99372 0.93453 1.86821 1.31760 1.74104 1.30149 0.92652 0.93715 0.93001 0.89640 0.89979 0.88437 0.88918 0.88133 0.87150 0.87745 0.73533 0.86389 0.83248 0.83075 0.87625 0.88228 0.84442 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 2 C 0.03 1.47 5.47 84.65 0.46 1.94 16 3 Si 0.93 43.86 27.47 68.60 1.88 45.75 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 7 C -0.51 -28.26 8.34 25.60 0.21 -28.05 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 9 C 0.21 9.79 3.85 85.63 0.33 10.12 16 10 N -0.56 -22.66 2.47 -827.86 -2.05 -24.71 16 11 C 0.14 4.84 5.68 86.38 0.49 5.33 16 12 C -0.19 -5.15 6.01 -10.80 -0.06 -5.22 16 13 C -0.17 -3.87 10.18 30.59 0.31 -3.56 16 14 C -0.15 -3.21 10.25 30.59 0.31 -2.89 16 15 C 0.51 20.51 7.67 87.24 0.67 21.18 16 16 O -0.55 -21.26 16.04 -3.26 -0.05 -21.31 16 17 C 0.49 19.87 7.58 87.24 0.66 20.53 16 18 O -0.47 -22.28 9.45 -3.35 -0.03 -22.31 16 19 N -0.64 -21.28 5.30 -305.13 -1.62 -22.90 16 20 C 0.19 6.06 6.31 38.12 0.24 6.30 16 21 C -0.17 -6.27 8.73 22.44 0.20 -6.08 16 22 C -0.07 -2.02 10.01 22.19 0.22 -1.79 16 23 C -0.15 -3.91 10.06 22.48 0.23 -3.69 16 24 C 0.11 2.96 7.03 22.66 0.16 3.12 16 25 C -0.21 -5.54 6.20 -19.31 -0.12 -5.66 16 26 C -0.10 -1.84 7.11 30.82 0.22 -1.62 16 27 C 0.05 0.76 8.00 72.56 0.58 1.34 16 28 O -0.31 -7.13 11.11 -95.26 -1.06 -8.19 16 29 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 30 H 0.04 1.95 7.08 -2.39 -0.02 1.93 16 31 H 0.05 2.48 5.27 -2.39 -0.01 2.47 16 32 H 0.09 2.89 8.11 -2.39 -0.02 2.87 16 33 H 0.08 2.71 7.09 -2.39 -0.02 2.70 16 34 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 35 H 0.09 2.20 8.03 -2.39 -0.02 2.18 16 36 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.43 11.94 8.29 -92.71 -0.77 11.17 16 40 H 0.12 5.21 6.10 -2.91 -0.02 5.19 16 41 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 42 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 44 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.14 1.14 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -71.87 382.63 2.68 -69.19 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.20 Total: 31.53 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 5.11 Total: 11.30 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -3.37 Total: -105.96 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.14 Total: -51.80 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Total: -71.87 2.68 -69.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361905708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.484 kcal (2) G-P(sol) polarization free energy of solvation -71.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds