Wall clock time and date at job start Wed Apr 1 2020 02:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99997 * 2 1 4 4 H 1.48494 * 109.47309 * 269.99883 * 3 2 1 5 5 H 1.48504 * 109.47111 * 30.00213 * 3 2 1 6 6 H 1.48503 * 109.46951 * 149.99678 * 3 2 1 7 7 C 1.37874 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00345 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99662 * 180.02562 * 7 2 1 10 10 N 1.46907 * 109.46709 * 180.02562 * 9 7 2 11 11 C 1.46955 * 110.99821 * 170.00231 * 10 9 7 12 12 C 1.53050 * 109.36465 * 183.18362 * 11 10 9 13 13 N 1.46957 * 109.36532 * 301.59802 * 12 11 10 14 14 C 1.46897 * 111.00125 * 183.18700 * 13 12 11 15 15 C 1.50693 * 109.47504 * 169.99955 * 14 13 12 16 16 C 1.38163 * 120.02857 * 104.99471 * 15 14 13 17 17 C 1.38251 * 120.05527 * 179.72417 * 16 15 14 18 18 C 1.50696 * 119.94234 * 180.27923 * 17 16 15 19 19 F 1.39899 * 109.47227 * 90.00682 * 18 17 16 20 20 F 1.39906 * 109.47176 * 210.00335 * 18 17 16 21 21 F 1.39900 * 109.47654 * 330.00338 * 18 17 16 22 22 C 1.38290 * 120.11107 * 0.25940 * 17 16 15 23 23 C 1.38122 * 120.05338 * 0.04273 * 22 17 16 24 24 C 1.38719 * 120.02704 * 285.30029 * 15 14 13 25 25 O 1.35898 * 120.05545 * 0.02562 * 24 15 14 26 26 C 1.46955 * 110.87926 * 59.32052 * 13 12 11 27 27 C 1.46960 * 110.99760 * 293.79403 * 10 9 7 28 28 H 0.97003 * 119.99841 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.47233 * 60.00052 * 9 7 2 30 30 H 1.08998 * 109.47063 * 300.00072 * 9 7 2 31 31 H 1.09005 * 109.49096 * 63.21696 * 11 10 9 32 32 H 1.09000 * 109.48567 * 303.15432 * 11 10 9 33 33 H 1.08997 * 109.48716 * 181.62869 * 12 11 10 34 34 H 1.09004 * 109.48635 * 61.56307 * 12 11 10 35 35 H 1.09001 * 109.46775 * 49.99564 * 14 13 12 36 36 H 1.09001 * 109.47256 * 290.00140 * 14 13 12 37 37 H 1.08002 * 119.97507 * 0.02562 * 16 15 14 38 38 H 1.07991 * 119.97057 * 180.02562 * 22 17 16 39 39 H 1.07998 * 120.02547 * 179.97438 * 23 22 17 40 40 H 0.96693 * 114.00454 * 270.28084 * 25 24 15 41 41 H 1.08995 * 109.49004 * 60.64753 * 26 13 12 42 42 H 1.09000 * 109.48937 * 180.71314 * 26 13 12 43 43 H 1.08997 * 109.49088 * 296.78855 * 27 10 9 44 44 H 1.09008 * 109.48558 * 56.82675 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 5.4507 -2.6251 -0.2366 12 6 5.9071 -4.0842 -0.3083 13 7 5.5602 -4.7655 0.9467 14 6 6.0498 -6.1505 0.9467 15 6 5.8972 -6.7373 2.3263 16 6 4.8899 -7.6474 2.5829 17 6 4.7530 -8.1905 3.8469 18 6 3.6573 -9.1877 4.1225 19 9 4.1298 -10.4806 3.8730 20 9 3.2602 -9.0865 5.4602 21 9 2.5646 -8.9219 3.2903 22 6 5.6200 -7.8204 4.8587 23 6 6.6248 -6.9062 4.6087 24 6 6.7641 -6.3594 3.3411 25 8 7.7515 -5.4593 3.0929 26 6 4.1107 -4.7194 1.1843 27 6 3.6544 -3.2603 1.2561 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6800 0.8910 30 1 3.8752 -0.6803 -0.8888 31 1 5.9692 -2.1216 0.5793 32 1 5.6810 -2.1253 -1.1775 33 1 6.9864 -4.1208 -0.4557 34 1 5.4089 -4.5805 -1.1412 35 1 7.1015 -6.1640 0.6603 36 1 5.4719 -6.7402 0.2351 37 1 4.2119 -7.9386 1.7943 38 1 5.5113 -8.2463 5.8451 39 1 7.3014 -6.6172 5.3993 40 1 8.5814 -5.8575 2.7965 41 1 3.5922 -5.2229 0.3684 42 1 3.8804 -5.2191 2.1253 43 1 4.1524 -2.7640 2.0890 44 1 2.5750 -3.2233 1.4036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237140205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:51 Heat of formation + Delta-G solvation = -147.334540 kcal Electronic energy + Delta-G solvation = -30574.280972 eV Core-core repulsion = 25884.092841 eV Total energy + Delta-G solvation = -4690.188130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.37863 -47.88645 -47.84831 -40.50472 -38.63767 -37.14477 -35.41990 -32.71516 -31.79212 -31.29312 -30.44421 -28.70323 -26.38399 -25.87892 -23.94752 -23.17098 -22.77764 -21.44439 -20.97458 -19.25067 -18.72955 -18.68557 -18.59947 -18.29555 -16.79209 -16.28066 -16.02707 -15.62794 -15.07367 -14.81254 -14.74956 -14.56399 -14.40045 -14.33143 -14.25806 -14.15399 -13.99408 -13.97838 -13.77021 -13.52829 -13.40432 -13.02195 -12.72436 -12.45697 -12.33931 -12.09834 -11.89859 -11.79021 -11.37545 -10.95191 -10.82932 -10.79053 -10.56246 -10.38289 -10.06103 -9.81765 -9.38957 -9.25433 -9.12765 -8.55355 -8.18067 -7.34776 -6.03791 -4.01089 0.51342 0.82880 2.41236 2.95635 3.29722 3.37148 3.39872 3.44995 3.75337 3.83087 4.08633 4.19025 4.37335 4.43560 4.47448 4.71154 4.78929 4.96294 5.10389 5.16380 5.26485 5.28526 5.42957 5.49525 5.52255 5.63349 5.72091 5.75006 5.81488 5.86325 6.00254 6.03066 6.11774 6.23798 6.32659 6.52103 6.65946 6.85496 6.99138 7.14232 7.23474 7.35242 7.61263 7.92732 8.06798 8.67470 9.04173 9.58080 11.09292 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.002784 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.976845 B =10053.875171 C =11178.925780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.064 3.936 13 N -0.527 5.527 14 C 0.101 3.899 15 C -0.105 4.105 16 C -0.048 4.048 17 C -0.196 4.196 18 C 0.510 3.490 19 F -0.179 7.179 20 F -0.177 7.177 21 F -0.174 7.174 22 C -0.056 4.056 23 C -0.152 4.152 24 C 0.168 3.832 25 O -0.478 6.478 26 C 0.057 3.943 27 C 0.069 3.931 28 H 0.263 0.737 29 H -0.011 1.011 30 H 0.023 0.977 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.390 0.610 41 H 0.040 0.960 42 H 0.069 0.931 43 H 0.029 0.971 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.090 -19.939 7.914 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.064 4.064 13 N -0.251 5.251 14 C -0.027 4.027 15 C -0.106 4.106 16 C -0.067 4.067 17 C -0.198 4.198 18 C 0.456 3.544 19 F -0.160 7.160 20 F -0.159 7.159 21 F -0.156 7.156 22 C -0.074 4.074 23 C -0.170 4.170 24 C 0.122 3.878 25 O -0.288 6.288 26 C -0.071 4.071 27 C -0.060 4.060 28 H 0.073 0.927 29 H 0.007 0.993 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.247 0.753 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.478 -19.406 8.064 26.705 hybrid contribution 0.471 0.505 -0.038 0.691 sum 16.949 -18.901 8.027 26.626 Atomic orbital electron populations 1.69896 1.06119 1.26816 1.51129 1.24897 0.94732 0.98850 0.94846 0.86863 0.80346 0.84022 0.78548 1.20176 1.21214 1.19250 1.21031 0.88737 0.94688 1.50278 0.90203 1.20148 0.97037 0.84098 0.95058 1.62125 1.10355 1.19081 1.33864 1.22103 0.90247 0.94697 1.00431 1.22127 0.99456 0.95067 0.89762 1.62187 1.14958 1.13025 1.34977 1.20830 1.01033 0.89606 0.91203 1.20150 0.96554 0.97131 0.96736 1.20798 0.96164 0.94406 0.95322 1.19896 0.99709 1.02992 0.97177 1.18259 0.81754 0.80238 0.74152 1.93219 1.88308 1.40540 1.93965 1.93193 1.91715 1.96091 1.34877 1.93221 1.56728 1.93746 1.71861 1.20776 0.92658 0.95621 0.98341 1.21416 1.00338 0.97813 0.97445 1.18418 0.90418 0.87495 0.91464 1.84926 1.23105 1.31983 1.88823 1.22267 0.86282 0.98281 1.00224 1.22000 1.01723 0.91582 0.90687 0.92684 0.99323 0.95855 0.95002 0.90989 0.91059 0.94186 0.89881 0.93804 0.84407 0.84431 0.84234 0.75317 0.94155 0.91230 0.95288 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.51 -14.60 9.03 -34.44 -0.31 -14.91 16 8 H 0.08 2.48 7.37 -52.49 -0.39 2.10 16 9 C 0.16 4.02 3.79 -4.97 -0.02 4.00 16 10 N -0.53 -11.28 4.70 -235.90 -1.11 -12.39 16 11 C 0.05 0.94 5.61 -3.77 -0.02 0.92 16 12 C 0.06 0.89 5.61 -3.77 -0.02 0.87 16 13 N -0.53 -7.34 4.70 -235.92 -1.11 -8.45 16 14 C 0.10 1.06 4.70 -4.98 -0.02 1.04 16 15 C -0.10 -1.06 4.44 -104.48 -0.46 -1.53 16 16 C -0.05 -0.48 8.38 -39.60 -0.33 -0.81 16 17 C -0.20 -1.92 5.45 -104.60 -0.57 -2.49 16 18 C 0.51 5.18 3.36 36.00 0.12 5.30 16 19 F -0.18 -1.80 17.30 2.25 0.04 -1.76 16 20 F -0.18 -1.84 16.46 2.25 0.04 -1.80 16 21 F -0.17 -1.98 16.46 2.25 0.04 -1.94 16 22 C -0.06 -0.47 9.39 -39.60 -0.37 -0.84 16 23 C -0.15 -1.27 9.99 -39.43 -0.39 -1.66 16 24 C 0.17 1.61 6.68 -39.21 -0.26 1.34 16 25 O -0.48 -4.32 12.84 -19.42 -0.25 -4.57 16 26 C 0.06 0.92 5.42 -3.77 -0.02 0.90 16 27 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 29 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 30 H 0.02 0.57 7.45 -51.93 -0.39 0.19 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 33 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 36 H 0.04 0.45 7.93 -51.93 -0.41 0.03 16 37 H 0.14 1.29 7.54 -52.49 -0.40 0.90 16 38 H 0.14 0.91 7.60 -52.49 -0.40 0.51 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.39 1.50 9.06 45.56 0.41 1.92 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 2.02 6.79 -51.92 -0.35 1.67 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -32.98 368.00 -8.68 -41.66 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.17 Total: -1.72 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.81 Total: -4.63 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -1.44 Total: -47.83 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.25 Total: -4.57 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.11 Total: -5.51 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.98 -8.68 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237140205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.670 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds