Wall clock time and date at job start Wed Apr 1 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34327 * 125.37849 * 2 1 4 4 C 1.46972 * 106.38280 * 179.97438 * 3 2 1 5 5 C 1.41776 * 127.08987 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99477 * 16.87048 * 5 4 3 7 7 C 1.43197 * 120.00141 * 7.10905 * 6 5 4 8 8 N 4.08143 * 105.43359 * 18.57784 * 2 1 3 9 9 C 1.46720 * 119.99599 * 187.10481 * 6 5 4 10 10 O 1.21635 * 120.00486 * 0.02562 * 9 6 5 11 11 O 1.34866 * 119.99689 * 180.02562 * 9 6 5 12 12 C 1.34851 * 116.99716 * 180.02562 * 11 9 6 13 13 H 1.08004 * 120.00208 * 359.97438 * 12 11 9 14 14 C 1.38789 * 119.99743 * 180.02562 * 12 11 9 15 15 N 1.31437 * 119.99997 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00113 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46717 * 90.00186 * 16 14 12 18 18 H 1.48499 * 109.47097 * 210.00257 * 16 14 12 19 19 H 1.48498 * 109.46975 * 330.00623 * 16 14 12 20 20 C 1.38571 * 105.82771 * 0.25909 * 4 3 2 21 21 C 1.50702 * 125.95794 * 179.69826 * 20 4 3 22 22 N 1.34563 * 108.08707 * 359.57779 * 20 4 3 23 23 C 1.46506 * 124.77027 * 180.16637 * 22 20 4 24 24 C 1.53000 * 109.47340 * 270.28742 * 23 22 20 25 25 H 1.09005 * 109.82119 * 305.70252 * 24 23 22 26 26 C 1.54377 * 109.82972 * 184.81488 * 24 23 22 27 27 C 1.55449 * 102.18366 * 219.18249 * 26 24 23 28 28 C 1.54944 * 100.98986 * 34.04103 * 27 26 24 29 29 O 1.43234 * 109.82953 * 66.58723 * 24 23 22 30 30 H 1.09004 * 109.46963 * 90.02647 * 1 2 3 31 31 H 1.08993 * 109.47673 * 210.02359 * 1 2 3 32 32 H 1.09000 * 109.47516 * 330.02812 * 1 2 3 33 33 H 1.08000 * 126.80926 * 359.95856 * 3 2 1 34 34 H 1.07994 * 120.00179 * 197.15662 * 5 4 3 35 35 H 0.96998 * 120.00282 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.47115 * 90.02622 * 21 20 4 37 37 H 1.08994 * 109.47224 * 210.02767 * 21 20 4 38 38 H 1.09002 * 109.46706 * 330.03156 * 21 20 4 39 39 H 1.08995 * 109.46739 * 30.29015 * 23 22 20 40 40 H 1.09005 * 109.46401 * 150.28930 * 23 22 20 41 41 H 1.08998 * 110.84935 * 337.32416 * 26 24 23 42 42 H 1.08995 * 110.84921 * 100.93912 * 26 24 23 43 43 H 1.08997 * 111.05916 * 276.12125 * 27 26 24 44 44 H 1.09004 * 111.17944 * 152.00986 * 27 26 24 45 45 H 1.09002 * 110.30784 * 204.68560 * 28 27 26 46 46 H 1.08999 * 110.39336 * 82.56705 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2847 1.0952 0.0000 4 6 3.6744 0.6168 0.0006 5 6 4.8509 1.4079 0.0014 6 6 4.7850 2.7442 0.3490 7 6 3.5626 3.2932 0.8538 8 7 2.5931 3.7292 1.2534 9 6 5.9676 3.5999 0.2008 10 8 7.0058 3.1336 -0.2284 11 8 5.9034 4.9035 0.5404 12 6 7.0254 5.6340 0.3792 13 1 7.9213 5.1699 -0.0063 14 6 7.0292 6.9819 0.7097 15 7 8.1226 7.6941 0.5521 16 14 5.4800 7.7844 1.3770 17 1 5.4652 7.6762 2.8580 18 1 5.4561 9.2165 0.9850 19 1 4.2873 7.0983 0.8187 20 6 3.5978 -0.7667 -0.0051 21 6 4.7669 -1.7177 -0.0132 22 7 2.2975 -1.1132 0.0006 23 6 1.8001 -2.4912 0.0007 24 6 1.6268 -2.9711 -1.4417 25 1 0.9932 -2.2736 -1.9897 26 6 0.9896 -4.3772 -1.4529 27 6 1.7617 -5.0781 -2.6057 28 6 3.1613 -4.4294 -2.4611 29 8 2.9062 -3.0686 -2.0783 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3634 -0.8897 0.5141 32 1 -0.3634 0.8902 0.5134 33 1 1.9543 2.1234 -0.0006 34 1 5.7978 0.9676 -0.2741 35 1 8.1255 8.6361 0.7834 36 1 5.0520 -1.9517 1.0126 37 1 4.4856 -2.6349 -0.5304 38 1 5.6087 -1.2540 -0.5274 39 1 2.5138 -3.1350 0.5146 40 1 0.8396 -2.5306 0.5146 41 1 1.1602 -4.8880 -0.5052 42 1 -0.0755 -4.3187 -1.6768 43 1 1.3181 -4.8438 -3.5734 44 1 1.8101 -6.1558 -2.4491 45 1 3.6933 -4.4616 -3.4119 46 1 3.7377 -4.9381 -1.6884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006388627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:16 Heat of formation + Delta-G solvation = -30.010521 kcal Electronic energy + Delta-G solvation = -29482.602514 eV Core-core repulsion = 25339.358675 eV Total energy + Delta-G solvation = -4143.243839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65764 -39.86066 -39.07488 -36.57896 -35.36356 -34.27838 -33.13092 -32.81273 -32.26208 -31.92787 -29.61556 -29.25883 -26.71168 -25.50191 -24.82981 -22.94620 -22.39370 -21.88475 -20.84230 -20.11789 -18.87044 -17.89659 -17.57585 -17.16658 -16.81032 -16.41285 -15.59961 -15.21551 -14.92740 -14.68147 -14.58614 -14.46963 -14.05676 -13.91175 -13.83412 -13.62967 -13.39406 -13.05948 -12.81468 -12.77372 -12.57715 -12.52912 -12.42834 -12.39246 -12.28449 -12.11525 -11.93421 -11.77697 -11.68908 -11.47741 -11.41313 -11.24739 -11.16608 -10.46131 -10.30649 -10.21451 -9.77391 -9.63895 -9.17977 -8.61441 -8.30121 -7.48400 -6.33004 -4.02456 0.77206 2.18769 2.56424 3.04307 3.21787 3.24506 3.28421 3.34188 3.45696 3.52613 3.80749 3.97873 4.21578 4.23902 4.31594 4.33073 4.35454 4.49737 4.51486 4.57517 4.63222 4.69976 4.73114 4.89275 4.98350 5.03821 5.11939 5.15597 5.20704 5.23252 5.29235 5.33367 5.43172 5.45488 5.50386 5.52319 5.68346 5.81847 5.86674 6.10689 6.22037 6.41971 6.51933 6.70036 6.88636 7.07909 7.17667 7.78406 8.07582 8.11264 8.68262 9.06035 9.75904 10.74637 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021633 B = 0.002402 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.029101 B =11655.045910 C =12641.171307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.000 4.000 3 C -0.159 4.159 4 C -0.197 4.197 5 C 0.089 3.911 6 C -0.113 4.113 7 C 0.285 3.715 8 N -0.446 5.446 9 C 0.464 3.536 10 O -0.537 6.537 11 O -0.244 6.244 12 C -0.369 4.369 13 H 0.114 0.886 14 C 0.067 3.933 15 N -0.869 5.869 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.258 1.258 20 C 0.106 3.894 21 C -0.098 4.098 22 N -0.427 5.427 23 C 0.088 3.912 24 C 0.065 3.935 25 H 0.088 0.912 26 C -0.149 4.149 27 C -0.155 4.155 28 C 0.046 3.954 29 O -0.364 6.364 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.280 0.720 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.959 -30.909 -3.888 35.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C -0.182 4.182 4 C -0.203 4.203 5 C 0.065 3.935 6 C -0.119 4.119 7 C -0.028 4.028 8 N -0.123 5.123 9 C 0.311 3.689 10 O -0.434 6.434 11 O -0.152 6.152 12 C -0.445 4.445 13 H 0.132 0.868 14 C -0.138 4.138 15 N -0.508 5.508 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.182 1.182 20 C -0.011 4.011 21 C -0.155 4.155 22 N -0.103 5.103 23 C -0.035 4.035 24 C 0.006 3.994 25 H 0.106 0.894 26 C -0.187 4.187 27 C -0.193 4.193 28 C -0.030 4.030 29 O -0.284 6.284 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.104 -30.225 -3.376 35.393 hybrid contribution -0.310 0.251 0.179 0.437 sum -18.414 -29.973 -3.197 35.323 Atomic orbital electron populations 1.20312 0.88185 1.03042 1.02407 1.20107 0.93397 0.85325 1.11820 1.22385 0.91344 0.98220 1.06236 1.18510 0.92986 0.91274 1.17536 1.21116 0.96709 0.89757 0.85926 1.17360 0.87771 0.93563 1.13192 1.25327 0.92258 0.92256 0.92955 1.81040 1.12006 1.08712 1.10580 1.19739 0.86771 0.82057 0.80305 1.90712 1.31040 1.74767 1.46892 1.83627 1.40130 1.20037 1.71417 1.20723 0.88844 0.91431 1.43454 0.86837 1.24532 0.98027 0.95021 0.96179 1.69599 1.27054 1.08594 1.45565 0.86298 0.83299 0.78240 0.79813 1.19759 1.20629 1.18182 1.20853 0.84693 0.93800 1.01798 1.20570 0.94104 0.97970 1.02830 1.43369 1.05252 1.05480 1.56165 1.22371 1.01930 0.81504 0.97648 1.23168 0.86141 0.97484 0.92562 0.89430 1.23152 1.01172 0.94391 0.99996 1.23286 0.95706 1.01021 0.99282 1.23447 0.96513 0.82457 1.00634 1.88570 1.34940 1.26892 1.77953 0.91237 0.92137 0.90063 0.83279 0.83075 0.90980 0.90684 0.90156 0.89284 0.88637 0.88125 0.90031 0.89476 0.90142 0.89633 0.89346 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.04 36.00 0.36 -0.33 16 2 C 0.00 0.00 6.84 -81.88 -0.56 -0.56 16 3 C -0.16 -2.39 9.37 -37.43 -0.35 -2.74 16 4 C -0.20 -2.92 5.91 -104.89 -0.62 -3.54 16 5 C 0.09 1.46 9.29 -38.23 -0.36 1.10 16 6 C -0.11 -2.30 5.90 -104.55 -0.62 -2.91 16 7 C 0.28 5.95 11.74 -22.49 -0.26 5.68 16 8 N -0.45 -9.51 17.26 41.82 0.72 -8.79 16 9 C 0.46 11.63 7.81 34.16 0.27 11.90 16 10 O -0.54 -14.27 15.55 -19.37 -0.30 -14.57 16 11 O -0.24 -6.90 8.11 -22.00 -0.18 -7.08 16 12 C -0.37 -11.33 10.11 30.94 0.31 -11.01 16 13 H 0.11 3.73 7.09 -52.48 -0.37 3.36 16 14 C 0.07 1.98 5.50 -17.52 -0.10 1.89 16 15 N -0.87 -26.29 13.96 55.49 0.77 -25.52 16 16 Si 0.90 23.04 28.62 -169.99 -4.86 18.17 16 17 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.26 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.11 1.24 6.75 -81.27 -0.55 0.70 16 21 C -0.10 -0.85 9.57 36.01 0.34 -0.51 16 22 N -0.43 -4.37 2.66 -107.49 -0.29 -4.66 16 23 C 0.09 0.54 4.92 -4.04 -0.02 0.52 16 24 C 0.07 0.38 3.76 -26.01 -0.10 0.28 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 C -0.15 -0.45 6.56 -24.71 -0.16 -0.61 16 27 C -0.16 -0.49 7.16 -24.40 -0.17 -0.67 16 28 C 0.05 0.22 7.78 38.18 0.30 0.52 16 29 O -0.36 -2.84 8.86 -35.23 -0.31 -3.15 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.37 6.92 -51.93 -0.36 0.01 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.15 2.51 5.19 -52.49 -0.27 2.24 16 34 H 0.15 2.23 7.08 -52.49 -0.37 1.86 16 35 H 0.28 7.75 8.31 -40.82 -0.34 7.41 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.61 5.65 -51.93 -0.29 0.32 16 38 H 0.09 0.78 7.52 -51.93 -0.39 0.39 16 39 H 0.10 0.49 7.51 -51.93 -0.39 0.10 16 40 H 0.10 0.43 6.88 -51.93 -0.36 0.07 16 41 H 0.08 0.16 7.85 -51.93 -0.41 -0.25 16 42 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -36.90 388.60 -7.03 -43.92 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -6.15 Total: -3.88 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.28 Total: -0.30 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 1.21 Total: -38.97 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.79 Total: -24.81 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.86 Total: 18.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.90 -7.03 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006388627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.911 kcal (2) G-P(sol) polarization free energy of solvation -36.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds