Wall clock time and date at job start Wed Apr 1 2020 02:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35978 * 116.99964 * 2 1 4 4 C 1.39279 * 119.90740 * 359.97438 * 3 2 1 5 5 C 1.37726 * 120.69765 * 179.97438 * 4 3 2 6 6 C 1.39019 * 120.06603 * 0.02562 * 5 4 3 7 7 O 1.34825 * 133.08442 * 179.97438 * 6 5 4 8 8 C 1.34923 * 110.86101 * 180.02562 * 7 6 5 9 9 C 1.46971 * 125.13365 * 179.97438 * 8 7 6 10 10 O 1.21660 * 120.00212 * 188.13329 * 9 8 7 11 11 N 1.34779 * 120.00081 * 8.13708 * 9 8 7 12 12 C 1.46966 * 120.59186 * 7.52889 * 11 9 8 13 13 C 1.53806 * 108.39933 * 124.75862 * 12 11 9 14 14 N 1.46971 * 108.58061 * 49.63407 * 13 12 11 15 15 C 1.36935 * 120.59248 * 124.66797 * 14 13 12 16 16 H 1.07993 * 120.00185 * 221.16038 * 15 14 13 17 17 C 1.38810 * 119.99894 * 41.15707 * 15 14 13 18 18 N 1.31622 * 120.00301 * 6.81737 * 17 15 14 19 19 Si 1.86807 * 120.00059 * 186.81819 * 17 15 14 20 20 H 1.48503 * 109.46683 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47448 * 119.99834 * 19 17 15 22 22 H 1.48500 * 109.46835 * 240.00228 * 19 17 15 23 23 C 1.46962 * 118.81273 * 304.65238 * 14 13 12 24 24 C 1.46969 * 120.59481 * 187.80966 * 11 9 8 25 25 C 1.35815 * 109.73676 * 0.02562 * 8 7 6 26 26 C 1.50700 * 126.96048 * 179.97438 * 25 8 7 27 27 C 1.40683 * 119.34645 * 359.97438 * 6 5 4 28 28 C 1.38039 * 119.90370 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.46752 * 300.00398 * 1 2 3 30 30 H 1.09002 * 109.47153 * 59.99829 * 1 2 3 31 31 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.65500 * 0.28383 * 4 3 2 33 33 H 1.08001 * 119.96672 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.60677 * 244.54050 * 12 11 9 35 35 H 1.08999 * 109.61001 * 5.04837 * 12 11 9 36 36 H 1.09006 * 109.74064 * 289.85030 * 13 12 11 37 37 H 1.08999 * 109.53603 * 169.30497 * 13 12 11 38 38 H 0.96999 * 120.00191 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.60912 * 295.47943 * 23 14 13 40 40 H 1.08995 * 109.75277 * 175.05022 * 23 14 13 41 41 H 1.08994 * 109.60609 * 354.94245 * 24 11 9 42 42 H 1.09000 * 109.60559 * 115.45754 * 24 11 9 43 43 H 1.09006 * 109.46994 * 90.02048 * 26 25 8 44 44 H 1.08998 * 109.47421 * 210.02472 * 26 25 8 45 45 H 1.09002 * 109.47168 * 330.02380 * 26 25 8 46 46 H 1.08002 * 120.22898 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2859 2.3784 -0.0005 5 6 1.8942 3.6141 0.0000 6 6 3.2812 3.7076 0.0005 7 8 4.1338 4.7520 0.0006 8 6 5.4143 4.3269 0.0007 9 6 6.5958 5.2011 0.0003 10 8 7.7052 4.7245 -0.1487 11 7 6.4502 6.5308 0.1650 12 6 5.1411 7.1029 0.5095 13 6 5.2982 7.9376 1.7917 14 7 6.4445 8.8420 1.6242 15 6 6.2966 10.1931 1.7916 16 1 6.7870 10.8778 1.1157 17 6 5.5162 10.6824 2.8300 18 7 5.0286 9.8573 3.7322 19 14 5.1579 12.5121 2.9471 20 1 5.8175 13.2187 1.8197 21 1 3.6912 12.7346 2.8812 22 1 5.6810 13.0375 4.2338 23 6 7.7524 8.2705 1.2743 24 6 7.5965 7.4352 -0.0026 25 6 5.4468 2.9691 0.0000 26 6 6.6723 2.0921 -0.0007 27 6 4.0516 2.5305 0.0011 28 6 3.4250 1.2815 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2078 2.3137 0.0037 33 1 1.2930 4.5113 0.0000 34 1 4.7945 7.7397 -0.3045 35 1 4.4241 6.2997 0.6795 36 1 5.4740 7.2778 2.6414 37 1 4.3932 8.5214 1.9599 38 1 4.4829 10.1993 4.4576 39 1 8.1029 7.6343 2.0870 40 1 8.4705 9.0721 1.1015 41 1 8.5015 6.8514 -0.1706 42 1 7.4207 8.0950 -0.8522 43 1 6.9678 1.8798 1.0268 44 1 6.4499 1.1573 -0.5153 45 1 7.4857 2.6048 -0.5141 46 1 4.0153 0.3771 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130196021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:33 Heat of formation + Delta-G solvation = -1.724835 kcal Electronic energy + Delta-G solvation = -30225.015629 eV Core-core repulsion = 26082.998350 eV Total energy + Delta-G solvation = -4142.017279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.59396 -39.98669 -39.34993 -36.93902 -36.66191 -34.13912 -33.65434 -31.48321 -30.77903 -30.37133 -29.50298 -27.98372 -27.37106 -26.64313 -24.50350 -23.52114 -22.68121 -22.41890 -20.97846 -20.13548 -19.20767 -18.47236 -17.46731 -17.25442 -16.52360 -16.35548 -15.94139 -15.81045 -15.68604 -14.81074 -14.69994 -14.56635 -14.21062 -13.75410 -13.66743 -13.53965 -13.37655 -13.28217 -13.14708 -13.08743 -12.66460 -12.65321 -12.44140 -12.41793 -11.90359 -11.56680 -11.24524 -11.09053 -10.96607 -10.89531 -10.74049 -10.50543 -10.28966 -10.13894 -10.02942 -9.90656 -9.62970 -8.60865 -8.52695 -8.26166 -8.07256 -6.55904 -5.88914 -3.49143 0.45004 1.20431 1.77894 2.47611 2.91828 3.25943 3.30483 3.37504 3.39470 3.41581 3.46833 4.32343 4.41016 4.41713 4.57474 4.75001 4.82064 4.82687 4.85333 5.03191 5.13787 5.20234 5.30560 5.35286 5.50580 5.62584 5.72172 5.77085 5.81620 5.86937 5.90057 5.96859 6.01505 6.08253 6.12338 6.15661 6.21805 6.34626 6.42371 6.48549 6.77851 6.89042 6.91103 7.11866 7.17361 7.37477 7.71142 7.75493 8.28554 8.42880 9.11185 9.68205 10.33694 11.17886 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.002833 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.878254 B = 9882.738308 C =11464.611228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.104 3.896 4 C -0.169 4.169 5 C -0.067 4.067 6 C 0.031 3.969 7 O -0.168 6.168 8 C -0.008 4.008 9 C 0.588 3.412 10 O -0.531 6.531 11 N -0.581 5.581 12 C 0.067 3.933 13 C 0.166 3.834 14 N -0.589 5.589 15 C -0.265 4.265 16 H 0.063 0.937 17 C 0.016 3.984 18 N -0.897 5.897 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.288 1.288 23 C 0.132 3.868 24 C 0.095 3.905 25 C -0.097 4.097 26 C -0.092 4.092 27 C -0.097 4.097 28 C -0.101 4.101 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.026 0.974 37 H 0.088 0.912 38 H 0.256 0.744 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 -17.623 -8.557 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.060 3.940 4 C -0.188 4.188 5 C -0.085 4.085 6 C -0.017 4.017 7 O -0.071 6.071 8 C -0.058 4.058 9 C 0.375 3.625 10 O -0.411 6.411 11 N -0.311 5.311 12 C -0.056 4.056 13 C 0.039 3.961 14 N -0.312 5.312 15 C -0.395 4.395 16 H 0.080 0.920 17 C -0.185 4.185 18 N -0.539 5.539 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.214 1.214 22 H -0.214 1.214 23 C 0.005 3.995 24 C -0.028 4.028 25 C -0.100 4.100 26 C -0.148 4.148 27 C -0.099 4.099 28 C -0.120 4.120 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.044 0.956 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.546 -17.668 -8.467 20.995 hybrid contribution -0.785 1.071 0.280 1.357 sum -8.332 -16.597 -8.186 20.295 Atomic orbital electron populations 1.23069 0.78353 1.03994 1.01420 1.86081 1.21331 1.26384 1.89279 1.18610 0.91750 0.84291 0.99394 1.21045 1.00215 0.90972 1.06539 1.19760 0.89127 0.98392 1.01271 1.19812 0.92063 0.85482 1.04321 1.84409 1.14345 1.32037 1.76311 1.21950 0.82603 0.93388 1.07875 1.16847 0.85670 0.81675 0.78275 1.90775 1.23456 1.74262 1.52643 1.48015 1.12389 1.04934 1.65765 1.23294 0.82621 0.98519 1.01137 1.21154 0.93173 0.91356 0.90407 1.43854 1.02127 1.03290 1.81926 1.19114 1.30479 0.81740 1.08145 0.91973 1.25469 1.00416 0.97783 0.94791 1.69964 1.36390 1.33724 1.13825 0.86212 0.77758 0.85010 0.77699 1.20017 1.21433 1.21437 1.21332 0.89895 0.95497 0.92803 1.22362 0.88042 0.91980 1.00453 1.21255 0.93819 0.92182 1.02750 1.20432 0.93725 0.97674 1.03019 1.19450 0.92454 0.93199 1.04753 1.19581 0.91175 0.96521 1.04704 0.92541 0.92599 0.88226 0.84186 0.84218 0.91551 0.88804 0.95575 0.89366 0.93411 0.95698 0.91238 0.89665 0.91471 0.90724 0.91505 0.88779 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.10 10.49 -19.67 -0.21 -3.31 16 3 C 0.10 1.14 6.68 -39.27 -0.26 0.88 16 4 C -0.17 -1.65 9.01 -39.38 -0.35 -2.00 16 5 C -0.07 -0.76 10.05 -39.48 -0.40 -1.15 16 6 C 0.03 0.44 7.40 -38.37 -0.28 0.15 16 7 O -0.17 -2.71 7.11 2.53 0.02 -2.69 16 8 C -0.01 -0.14 6.73 -36.91 -0.25 -0.39 16 9 C 0.59 10.87 7.65 -12.72 -0.10 10.78 16 10 O -0.53 -10.33 14.03 5.22 0.07 -10.25 16 11 N -0.58 -10.99 2.94 -173.65 -0.51 -11.50 16 12 C 0.07 1.29 6.30 -3.37 -0.02 1.27 16 13 C 0.17 3.84 5.43 -3.37 -0.02 3.83 16 14 N -0.59 -14.45 2.90 -171.77 -0.50 -14.95 16 15 C -0.26 -7.03 9.46 -15.06 -0.14 -7.18 16 16 H 0.06 1.63 7.84 -52.49 -0.41 1.22 16 17 C 0.02 0.43 5.09 -17.43 -0.09 0.34 16 18 N -0.90 -25.36 11.57 55.49 0.64 -24.72 16 19 Si 0.90 20.98 29.56 -169.99 -5.02 15.95 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.13 2.77 6.67 -3.60 -0.02 2.75 16 24 C 0.10 1.74 6.60 -3.59 -0.02 1.72 16 25 C -0.10 -1.45 6.39 -102.27 -0.65 -2.11 16 26 C -0.09 -1.17 9.91 36.01 0.36 -0.82 16 27 C -0.10 -1.36 6.36 -105.20 -0.67 -2.03 16 28 C -0.10 -1.22 10.04 -39.10 -0.39 -1.61 16 29 H 0.06 0.27 7.65 -51.92 -0.40 -0.13 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.14 0.93 6.26 -52.49 -0.33 0.60 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.69 4.16 -53.60 -0.22 1.47 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 2.22 6.68 -51.93 -0.35 1.87 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 1.38 7.94 -51.93 -0.41 0.97 16 41 H 0.09 1.48 6.99 -51.93 -0.36 1.11 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.32 6.24 -51.93 -0.32 1.00 16 46 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -31.30 372.33 -8.37 -39.67 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.14 Total: 0.62 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.33 Total: 5.57 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.37 Total: -51.17 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.12 Total: -16.26 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.30 -8.37 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130196021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.946 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds