Wall clock time and date at job start Wed Apr 1 2020 02:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35966 * 117.00021 * 2 1 4 4 C 1.39126 * 119.95911 * 359.97438 * 3 2 1 5 5 C 1.37786 * 120.60397 * 179.97438 * 4 3 2 6 6 C 1.38984 * 120.04483 * 0.02562 * 5 4 3 7 7 O 1.34990 * 133.03564 * 180.02562 * 6 5 4 8 8 C 1.33779 * 111.34132 * 179.74165 * 7 6 5 9 9 C 1.50709 * 125.07183 * 180.24793 * 8 7 6 10 10 C 1.36066 * 109.85683 * 0.39434 * 8 7 6 11 11 C 1.47071 * 127.13751 * 179.88737 * 10 8 7 12 12 O 1.21653 * 119.99855 * 269.68746 * 11 10 8 13 13 N 1.34774 * 119.99878 * 89.68900 * 11 10 8 14 14 C 1.46964 * 120.59247 * 179.97438 * 13 11 10 15 15 C 1.53369 * 108.63607 * 235.19892 * 14 13 11 16 16 N 1.46969 * 108.63762 * 310.58254 * 15 14 13 17 17 C 1.36932 * 120.58959 * 235.20011 * 16 15 14 18 18 H 1.08009 * 119.99567 * 151.84041 * 17 16 15 19 19 C 1.38803 * 120.00220 * 331.56903 * 17 16 15 20 20 N 1.31619 * 120.00213 * 342.83014 * 19 17 16 21 21 Si 1.86802 * 120.00125 * 162.83365 * 19 17 16 22 22 H 1.48504 * 109.47318 * 59.99595 * 21 19 17 23 23 H 1.48506 * 109.47396 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47177 * 299.99833 * 21 19 17 25 25 C 1.46960 * 118.81241 * 55.46896 * 16 15 14 26 26 C 1.46968 * 120.59197 * 359.97335 * 13 11 10 27 27 C 1.40213 * 119.34551 * 359.97438 * 6 5 4 28 28 C 1.38291 * 119.95914 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47490 * 300.00216 * 1 2 3 30 30 H 1.09007 * 109.46840 * 60.00222 * 1 2 3 31 31 H 1.09005 * 109.47286 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.69975 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.98022 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47015 * 270.17067 * 9 8 7 35 35 H 1.09005 * 109.46292 * 30.17328 * 9 8 7 36 36 H 1.09001 * 109.46861 * 150.16743 * 9 8 7 37 37 H 1.09006 * 109.60531 * 115.46080 * 14 13 11 38 38 H 1.08997 * 109.61145 * 354.95109 * 14 13 11 39 39 H 1.08994 * 109.61100 * 190.83261 * 15 14 13 40 40 H 1.08997 * 109.60550 * 70.32335 * 15 14 13 41 41 H 0.97003 * 120.00245 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.60875 * 64.26982 * 25 16 15 43 43 H 1.08995 * 109.60997 * 184.77607 * 25 16 15 44 44 H 1.08999 * 109.60725 * 244.53736 * 26 13 11 45 45 H 1.08994 * 109.60885 * 4.88122 * 26 13 11 46 46 H 1.08004 * 120.20570 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2877 2.3777 -0.0005 5 6 1.8994 3.6124 0.0000 6 6 3.2864 3.7018 0.0005 7 8 4.1422 4.7457 0.0015 8 6 5.4145 4.3322 0.0073 9 6 6.6193 5.2376 0.0153 10 6 5.4585 2.9723 0.0016 11 6 6.6590 2.1228 0.0028 12 8 7.1564 1.7713 -1.0503 13 7 7.2081 1.7337 1.1705 14 6 8.4073 0.8843 1.1868 15 6 8.1099 -0.3675 2.0215 16 7 7.5203 0.0503 3.3012 17 6 8.0782 -0.3450 4.4876 18 1 7.9705 0.2724 5.3672 19 6 8.7773 -1.5419 4.5611 20 7 8.6288 -2.4497 3.6197 21 14 9.9289 -1.8644 5.9961 22 1 9.1615 -1.8185 7.2667 23 1 10.5496 -3.2046 5.8413 24 1 10.9908 -0.8266 6.0215 25 6 6.3179 0.8950 3.2848 26 6 6.6182 2.1512 2.4502 27 6 4.0507 2.5264 0.0011 28 6 3.4273 1.2828 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2095 2.3148 -0.0014 33 1 1.3008 4.5112 -0.0009 34 1 6.9132 5.4603 -1.0104 35 1 6.3732 6.1651 0.5324 36 1 7.4426 4.7422 0.5298 37 1 9.2376 1.4323 1.6325 38 1 8.6630 0.5927 0.1682 39 1 9.0355 -0.9127 2.2058 40 1 7.4070 -1.0057 1.4859 41 1 9.1171 -3.2863 3.6712 42 1 5.4903 0.3447 2.8371 43 1 6.0597 1.1838 4.3036 44 1 7.3209 2.7894 2.9859 45 1 5.6940 2.6987 2.2657 46 1 4.0182 0.3787 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152730646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:28 Heat of formation + Delta-G solvation = -4.667693 kcal Electronic energy + Delta-G solvation = -30788.747569 eV Core-core repulsion = 26646.602678 eV Total energy + Delta-G solvation = -4142.144891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.65625 -39.80773 -39.36702 -36.73328 -36.69220 -33.97017 -33.31738 -31.36551 -31.15849 -30.49737 -30.04655 -27.53140 -27.33767 -26.68796 -24.07844 -23.12228 -23.03032 -22.26628 -21.56607 -20.15905 -18.80278 -18.26405 -17.71737 -16.75142 -16.45758 -16.39931 -15.83465 -15.69058 -15.52588 -15.12294 -14.77802 -14.64041 -14.05859 -13.69296 -13.66087 -13.42094 -13.31600 -13.28813 -13.21632 -13.13506 -12.97306 -12.58247 -12.51195 -12.32921 -11.80724 -11.74303 -11.25364 -11.03956 -10.91884 -10.81285 -10.73005 -10.57189 -10.25858 -10.14482 -9.96053 -9.85567 -9.52783 -8.58488 -8.31581 -8.25747 -8.07726 -6.70170 -5.83506 -3.28927 0.68347 1.24078 2.00572 2.46681 2.78349 3.09764 3.35866 3.41736 3.42416 3.45385 3.56978 4.26381 4.43923 4.48898 4.63411 4.80818 4.89671 4.93653 4.94312 5.07230 5.17383 5.25337 5.26359 5.29707 5.31866 5.34383 5.47802 5.72707 5.76214 5.78686 5.82463 5.93879 6.03935 6.08830 6.13216 6.21608 6.26584 6.32853 6.39810 6.51534 6.72953 6.88656 6.93572 7.24003 7.25741 7.54960 7.73089 7.86471 8.37407 8.51478 9.13206 9.75858 10.33158 11.23947 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.003512 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.948958 B = 7971.367074 C = 9410.482827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.118 3.882 4 C -0.178 4.178 5 C -0.064 4.064 6 C 0.017 3.983 7 O -0.184 6.184 8 C 0.083 3.917 9 C -0.083 4.083 10 C -0.212 4.212 11 C 0.584 3.416 12 O -0.545 6.545 13 N -0.584 5.584 14 C 0.086 3.914 15 C 0.159 3.841 16 N -0.590 5.590 17 C -0.259 4.259 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.900 5.900 21 Si 0.904 3.096 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.133 3.867 26 C 0.092 3.908 27 C -0.056 4.056 28 C -0.103 4.103 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.024 0.976 41 H 0.256 0.744 42 H 0.024 0.976 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.942 13.951 -7.110 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.073 3.927 4 C -0.197 4.197 5 C -0.082 4.082 6 C -0.029 4.029 7 O -0.085 6.085 8 C 0.033 3.967 9 C -0.139 4.139 10 C -0.216 4.216 11 C 0.370 3.630 12 O -0.423 6.423 13 N -0.316 5.316 14 C -0.037 4.037 15 C 0.032 3.968 16 N -0.313 5.313 17 C -0.388 4.388 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.544 5.544 21 Si 0.734 3.266 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.005 3.995 26 C -0.033 4.033 27 C -0.058 4.058 28 C -0.122 4.122 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.595 13.634 -7.634 20.712 hybrid contribution 0.221 -0.322 0.799 0.889 sum -13.374 13.312 -6.835 20.070 Atomic orbital electron populations 1.23075 0.78400 1.04138 1.01188 1.86146 1.21269 1.26229 1.88866 1.18646 0.91615 0.84391 0.98071 1.20966 1.00138 0.90908 1.07670 1.19613 0.88685 0.98180 1.01770 1.19340 0.91644 0.84318 1.07602 1.83758 1.14469 1.34001 1.76317 1.22510 0.83810 0.92477 0.97921 1.20550 0.90592 0.98211 1.04560 1.20589 0.92985 0.93218 1.14832 1.17186 0.82139 0.79763 0.83896 1.90774 1.63281 1.57125 1.31157 1.48051 1.28922 1.49314 1.05286 1.22588 0.85384 0.93878 1.01837 1.21193 1.00118 0.90853 0.84591 1.44003 1.26556 1.58187 1.02532 1.19146 1.29632 1.01180 0.88857 0.91528 1.25079 1.01536 0.94805 0.97965 1.70013 1.42736 1.06534 1.35117 0.86349 0.81096 0.77068 0.82093 1.20859 1.21592 1.20936 1.21331 0.90263 0.90375 0.97509 1.22424 0.97564 0.98907 0.84407 1.19102 0.91068 0.93206 1.02375 1.19627 0.91414 0.97083 1.04048 0.92560 0.92706 0.88128 0.84161 0.84582 0.88905 0.89489 0.88696 0.91890 0.89997 0.88125 0.95829 0.93386 0.95801 0.91551 0.91540 0.91117 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.97 10.49 -19.63 -0.21 -4.18 16 3 C 0.12 1.57 6.68 -39.23 -0.26 1.31 16 4 C -0.18 -1.86 9.01 -39.42 -0.36 -2.22 16 5 C -0.06 -0.69 10.06 -39.47 -0.40 -1.09 16 6 C 0.02 0.23 7.39 -38.56 -0.28 -0.05 16 7 O -0.18 -2.45 10.53 5.17 0.05 -2.40 16 8 C 0.08 1.11 7.29 -35.08 -0.26 0.86 16 9 C -0.08 -0.81 10.20 36.01 0.37 -0.44 16 10 C -0.21 -3.46 3.99 -103.25 -0.41 -3.87 16 11 C 0.58 11.05 7.08 -12.68 -0.09 10.96 16 12 O -0.54 -11.93 16.51 5.23 0.09 -11.85 16 13 N -0.58 -11.01 2.95 -173.64 -0.51 -11.52 16 14 C 0.09 1.75 6.59 -3.60 -0.02 1.72 16 15 C 0.16 3.81 5.51 -3.60 -0.02 3.79 16 16 N -0.59 -14.52 2.96 -171.80 -0.51 -15.02 16 17 C -0.26 -6.90 9.57 -15.06 -0.14 -7.05 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 19 C 0.01 0.14 4.91 -17.43 -0.09 0.06 16 20 N -0.90 -25.78 11.20 55.49 0.62 -25.16 16 21 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.13 2.74 6.70 -3.39 -0.02 2.71 16 26 C 0.09 1.59 6.51 -3.39 -0.02 1.57 16 27 C -0.06 -0.89 6.35 -104.98 -0.67 -1.55 16 28 C -0.10 -1.63 10.03 -39.24 -0.39 -2.02 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.14 0.99 6.27 -52.49 -0.33 0.67 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.66 6.99 -51.93 -0.36 1.30 16 39 H 0.10 2.64 6.00 -51.93 -0.31 2.33 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 1.11 6.29 -51.93 -0.33 0.79 16 46 H 0.14 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -33.33 379.21 -8.16 -41.49 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.30 Total: 0.82 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -2.08 Total: 5.90 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.40 Total: -51.70 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.07 Total: -18.43 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.33 -8.16 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152730646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.821 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds