Wall clock time and date at job start Wed Apr 1 2020 02:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35966 * 117.00021 * 2 1 4 4 C 1.39126 * 119.95911 * 359.97438 * 3 2 1 5 5 C 1.37786 * 120.60397 * 179.97438 * 4 3 2 6 6 C 1.38984 * 120.04483 * 0.02562 * 5 4 3 7 7 O 1.34990 * 133.03564 * 180.02562 * 6 5 4 8 8 C 1.33779 * 111.34132 * 179.74165 * 7 6 5 9 9 C 1.50709 * 125.07183 * 180.24793 * 8 7 6 10 10 C 1.36066 * 109.85683 * 0.39434 * 8 7 6 11 11 C 1.47071 * 127.13751 * 179.88737 * 10 8 7 12 12 O 1.21653 * 119.99855 * 269.68746 * 11 10 8 13 13 N 1.34774 * 119.99878 * 89.68900 * 11 10 8 14 14 C 1.46964 * 120.59247 * 179.97438 * 13 11 10 15 15 C 1.53369 * 108.63607 * 235.19892 * 14 13 11 16 16 N 1.46969 * 108.63762 * 310.58254 * 15 14 13 17 17 C 1.36932 * 120.58959 * 235.20011 * 16 15 14 18 18 H 1.08009 * 119.99567 * 151.84041 * 17 16 15 19 19 C 1.38803 * 120.00220 * 331.56903 * 17 16 15 20 20 N 1.31619 * 120.00213 * 342.83014 * 19 17 16 21 21 Si 1.86802 * 120.00125 * 162.83365 * 19 17 16 22 22 H 1.48504 * 109.47318 * 59.99595 * 21 19 17 23 23 H 1.48506 * 109.47396 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47177 * 299.99833 * 21 19 17 25 25 C 1.46960 * 118.81241 * 55.46896 * 16 15 14 26 26 C 1.46968 * 120.59197 * 359.97335 * 13 11 10 27 27 C 1.40213 * 119.34551 * 359.97438 * 6 5 4 28 28 C 1.38291 * 119.95914 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47490 * 300.00216 * 1 2 3 30 30 H 1.09007 * 109.46840 * 60.00222 * 1 2 3 31 31 H 1.09005 * 109.47286 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.69975 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.98022 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47015 * 270.17067 * 9 8 7 35 35 H 1.09005 * 109.46292 * 30.17328 * 9 8 7 36 36 H 1.09001 * 109.46861 * 150.16743 * 9 8 7 37 37 H 1.09006 * 109.60531 * 115.46080 * 14 13 11 38 38 H 1.08997 * 109.61145 * 354.95109 * 14 13 11 39 39 H 1.08994 * 109.61100 * 190.83261 * 15 14 13 40 40 H 1.08997 * 109.60550 * 70.32335 * 15 14 13 41 41 H 0.97003 * 120.00245 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.60875 * 64.26982 * 25 16 15 43 43 H 1.08995 * 109.60997 * 184.77607 * 25 16 15 44 44 H 1.08999 * 109.60725 * 244.53736 * 26 13 11 45 45 H 1.08994 * 109.60885 * 4.88122 * 26 13 11 46 46 H 1.08004 * 120.20570 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2877 2.3777 -0.0005 5 6 1.8994 3.6124 0.0000 6 6 3.2864 3.7018 0.0005 7 8 4.1422 4.7457 0.0015 8 6 5.4145 4.3322 0.0073 9 6 6.6193 5.2376 0.0153 10 6 5.4585 2.9723 0.0016 11 6 6.6590 2.1228 0.0028 12 8 7.1564 1.7713 -1.0503 13 7 7.2081 1.7337 1.1705 14 6 8.4073 0.8843 1.1868 15 6 8.1099 -0.3675 2.0215 16 7 7.5203 0.0503 3.3012 17 6 8.0782 -0.3450 4.4876 18 1 7.9705 0.2724 5.3672 19 6 8.7773 -1.5419 4.5611 20 7 8.6288 -2.4497 3.6197 21 14 9.9289 -1.8644 5.9961 22 1 9.1615 -1.8185 7.2667 23 1 10.5496 -3.2046 5.8413 24 1 10.9908 -0.8266 6.0215 25 6 6.3179 0.8950 3.2848 26 6 6.6182 2.1512 2.4502 27 6 4.0507 2.5264 0.0011 28 6 3.4273 1.2828 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2095 2.3148 -0.0014 33 1 1.3008 4.5112 -0.0009 34 1 6.9132 5.4603 -1.0104 35 1 6.3732 6.1651 0.5324 36 1 7.4426 4.7422 0.5298 37 1 9.2376 1.4323 1.6325 38 1 8.6630 0.5927 0.1682 39 1 9.0355 -0.9127 2.2058 40 1 7.4070 -1.0057 1.4859 41 1 9.1171 -3.2863 3.6712 42 1 5.4903 0.3447 2.8371 43 1 6.0597 1.1838 4.3036 44 1 7.3209 2.7894 2.9859 45 1 5.6940 2.6987 2.2657 46 1 4.0182 0.3787 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152730646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:27 Heat of formation + Delta-G solvation = -25.449616 kcal Electronic energy + Delta-G solvation = -30789.648741 eV Core-core repulsion = 26646.602678 eV Total energy + Delta-G solvation = -4143.046063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.69914 -40.94884 -40.70073 -38.47572 -37.63433 -35.71780 -34.50164 -33.08317 -32.25479 -32.04333 -31.18917 -28.96646 -28.19642 -27.89989 -25.80731 -24.77979 -24.00438 -23.80000 -22.55652 -21.73774 -20.24664 -19.21425 -19.15299 -18.28130 -17.76426 -17.38565 -17.13840 -16.77286 -16.68944 -16.60105 -16.32005 -15.99127 -15.52392 -15.30421 -15.12307 -15.06138 -14.66331 -14.51454 -14.20428 -14.05777 -13.95008 -13.80407 -13.47790 -13.33790 -13.31382 -13.17494 -12.67702 -12.64192 -12.53871 -12.35027 -12.09556 -11.92633 -11.86316 -11.84161 -11.74802 -11.31006 -10.98818 -10.61912 -9.93707 -9.30718 -9.11538 -8.70890 -7.89962 -5.39882 -0.29947 0.23996 0.92652 1.32036 1.46787 1.48827 1.51389 1.58264 2.00547 2.26703 2.50390 2.53760 3.25251 3.32222 3.32928 3.53916 3.70014 3.88461 3.92697 4.09793 4.16001 4.16320 4.18687 4.34601 4.38954 4.43328 4.43409 4.47433 4.55998 4.56991 4.60862 4.73389 4.74248 4.79206 4.85649 4.93267 4.97346 5.10945 5.13960 5.15918 5.16521 5.33238 5.39343 5.55900 5.63580 5.92522 6.32428 6.34479 6.37141 6.99631 7.06682 7.74917 8.29916 9.15771 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.003512 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.948958 B = 7971.367074 C = 9410.482827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.342 6.342 3 C 0.122 3.878 4 C -0.168 4.168 5 C -0.044 4.044 6 C 0.003 3.997 7 O -0.174 6.174 8 C 0.111 3.889 9 C -0.085 4.085 10 C -0.259 4.259 11 C 0.590 3.410 12 O -0.583 6.583 13 N -0.587 5.587 14 C 0.101 3.899 15 C 0.171 3.829 16 N -0.605 5.605 17 C -0.267 4.267 18 H 0.077 0.923 19 C -0.048 4.048 20 N -0.938 5.938 21 Si 0.973 3.027 22 H -0.274 1.274 23 H -0.298 1.298 24 H -0.274 1.274 25 C 0.130 3.870 26 C 0.107 3.893 27 C -0.075 4.075 28 C -0.149 4.149 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.076 0.924 40 H -0.014 1.014 41 H 0.251 0.749 42 H 0.003 0.997 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.059 17.615 -6.215 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.256 6.256 3 C 0.076 3.924 4 C -0.186 4.186 5 C -0.062 4.062 6 C -0.043 4.043 7 O -0.075 6.075 8 C 0.060 3.940 9 C -0.141 4.141 10 C -0.263 4.263 11 C 0.379 3.621 12 O -0.464 6.464 13 N -0.318 5.318 14 C -0.022 4.022 15 C 0.044 3.956 16 N -0.328 5.328 17 C -0.397 4.397 18 H 0.095 0.905 19 C -0.244 4.244 20 N -0.583 5.583 21 Si 0.800 3.200 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.199 1.199 25 C 0.004 3.996 26 C -0.017 4.017 27 C -0.077 4.077 28 C -0.168 4.168 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.201 0.799 33 H 0.197 0.803 34 H 0.125 0.875 35 H 0.138 0.862 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.004 0.996 41 H 0.060 0.940 42 H 0.021 0.979 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.754 17.336 -6.721 24.370 hybrid contribution 0.699 -1.497 0.484 1.722 sum -15.055 15.838 -6.237 22.724 Atomic orbital electron populations 1.23456 0.75626 1.05773 1.03061 1.86121 1.24251 1.26570 1.88631 1.18806 0.90931 0.85795 0.96865 1.21395 1.01909 0.89427 1.05907 1.20177 0.87594 0.99801 0.98632 1.19684 0.92653 0.83286 1.08678 1.83783 1.14258 1.33598 1.75832 1.23070 0.84777 0.91816 0.94353 1.20784 0.88689 0.98727 1.05871 1.20404 0.92143 0.94329 1.19464 1.17542 0.82338 0.79252 0.83013 1.90732 1.64600 1.58690 1.32427 1.48082 1.28513 1.49024 1.06159 1.22236 0.86611 0.92668 1.00729 1.20890 0.97829 0.91934 0.84951 1.44240 1.27896 1.58601 1.02086 1.19556 1.29271 1.01177 0.89675 0.90523 1.25894 1.03189 0.94681 1.00616 1.70193 1.43896 1.06910 1.37316 0.85267 0.79080 0.76473 0.79139 1.19957 1.22391 1.19943 1.21464 0.88267 0.90942 0.98923 1.22325 0.98999 0.97240 0.83090 1.19220 0.91253 0.94018 1.03162 1.19514 0.92854 0.96065 1.08385 0.90722 0.90564 0.86919 0.79936 0.80286 0.87485 0.86178 0.89135 0.90302 0.90514 0.90613 0.99614 0.93983 0.97919 0.90104 0.89502 0.89033 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -8.73 10.49 -93.16 -0.98 -9.71 16 3 C 0.12 3.21 6.68 22.50 0.15 3.36 16 4 C -0.17 -2.96 9.01 22.38 0.20 -2.76 16 5 C -0.04 -0.77 10.06 22.34 0.22 -0.55 16 6 C 0.00 0.08 7.39 22.93 0.17 0.24 16 7 O -0.17 -4.14 10.53 -4.41 -0.05 -4.19 16 8 C 0.11 2.78 7.29 25.18 0.18 2.96 16 9 C -0.09 -1.41 10.20 71.24 0.73 -0.68 16 10 C -0.26 -8.53 3.99 -18.97 -0.08 -8.60 16 11 C 0.59 23.19 7.08 86.56 0.61 23.81 16 12 O -0.58 -26.89 16.51 -4.20 -0.07 -26.96 16 13 N -0.59 -22.72 2.95 -821.50 -2.42 -25.14 16 14 C 0.10 4.28 6.59 86.41 0.57 4.85 16 15 C 0.17 8.71 5.51 86.41 0.48 9.19 16 16 N -0.60 -30.69 2.96 -697.45 -2.06 -32.75 16 17 C -0.27 -14.41 9.57 84.03 0.80 -13.61 16 18 H 0.08 3.92 7.89 -2.91 -0.02 3.89 16 19 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 20 N -0.94 -56.03 11.20 21.65 0.24 -55.79 16 21 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.13 5.49 6.70 86.55 0.58 6.07 16 26 C 0.11 3.68 6.51 86.55 0.56 4.24 16 27 C -0.08 -2.42 6.35 -20.10 -0.13 -2.54 16 28 C -0.15 -5.04 10.03 22.49 0.23 -4.82 16 29 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 30 H 0.08 0.67 7.65 -2.38 -0.02 0.65 16 31 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.18 1.61 6.27 -2.91 -0.02 1.59 16 33 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.09 1.64 7.86 -2.39 -0.02 1.62 16 37 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 38 H 0.08 3.31 6.99 -2.39 -0.02 3.29 16 39 H 0.08 4.23 6.00 -2.39 -0.01 4.22 16 40 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.08 3.13 7.93 -2.39 -0.02 3.11 16 44 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.09 2.81 6.29 -2.39 -0.02 2.79 16 46 H 0.10 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -78.10 379.21 4.51 -73.59 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.01 Total: 14.54 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 6.81 Total: 20.20 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.24 Total: -113.68 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.09 Total: -40.86 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -78.10 4.51 -73.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152730646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.142 kcal (2) G-P(sol) polarization free energy of solvation -78.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds