Wall clock time and date at job start Wed Apr 1 2020 03:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38674 * 120.98481 * 2 1 4 4 C 1.39226 * 117.91896 * 179.97438 * 3 2 1 5 5 O 1.35698 * 120.13809 * 179.97438 * 4 3 2 6 6 C 1.42896 * 117.00302 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47358 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46681 * 305.00518 * 7 6 5 9 9 O 1.42899 * 109.46879 * 64.99959 * 7 6 5 10 10 C 1.53003 * 109.47032 * 185.00239 * 7 6 5 11 11 O 1.42900 * 109.46605 * 174.99963 * 10 7 6 12 12 C 1.35676 * 116.99767 * 180.02562 * 11 10 7 13 13 C 1.39311 * 119.82105 * 180.02562 * 12 11 10 14 14 C 1.36433 * 120.18745 * 180.27884 * 13 12 11 15 15 C 1.40837 * 119.81257 * 359.49339 * 14 13 12 16 16 C 1.41208 * 120.18128 * 180.23043 * 15 14 13 17 17 H 1.07997 * 120.00069 * 204.70988 * 16 15 14 18 18 C 1.39895 * 120.00008 * 24.71720 * 16 15 14 19 19 N 1.30879 * 120.00135 * 17.77697 * 18 16 15 20 20 Si 1.86799 * 119.99868 * 197.78146 * 18 16 15 21 21 H 1.48498 * 109.47385 * 59.99826 * 20 18 16 22 22 H 1.48503 * 109.46925 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47336 * 299.99725 * 20 18 16 24 24 C 1.40840 * 119.63734 * 0.50083 * 15 14 13 25 25 C 1.36432 * 119.81132 * 359.75337 * 24 15 14 26 26 N 1.32367 * 119.72583 * 0.24876 * 4 3 2 27 27 N 1.28351 * 122.09564 * 359.47123 * 26 4 3 28 28 C 1.31845 * 122.25641 * 0.54400 * 27 26 4 29 29 C 1.50694 * 120.01166 * 179.70841 * 28 27 26 30 30 H 1.09000 * 109.46843 * 90.00776 * 1 2 3 31 31 H 1.09005 * 109.47203 * 209.99967 * 1 2 3 32 32 H 1.08997 * 109.47511 * 330.00429 * 1 2 3 33 33 H 1.07994 * 121.04101 * 359.94903 * 3 2 1 34 34 H 1.09004 * 109.46888 * 60.00355 * 6 5 4 35 35 H 1.08996 * 109.47657 * 300.00534 * 6 5 4 36 36 H 0.96704 * 113.99659 * 60.00198 * 9 7 6 37 37 H 1.08997 * 109.46793 * 55.00020 * 10 7 6 38 38 H 1.08994 * 109.47368 * 295.00076 * 10 7 6 39 39 H 1.08005 * 119.90210 * 359.97438 * 13 12 11 40 40 H 1.08001 * 120.09288 * 179.72575 * 14 13 12 41 41 H 0.97001 * 120.00430 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.09151 * 179.73098 * 24 15 14 43 43 H 1.07997 * 119.90771 * 179.97438 * 25 24 15 44 44 H 1.08993 * 109.47217 * 270.02275 * 29 28 27 45 45 H 1.09000 * 109.47113 * 30.02345 * 29 28 27 46 46 H 1.08996 * 109.47091 * 150.01950 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2209 1.1889 0.0000 4 6 3.6112 1.1144 0.0006 5 8 4.3543 2.2498 0.0000 6 6 5.7749 2.0955 0.0012 7 6 6.4378 3.4744 0.0011 8 1 6.0645 4.0569 -0.8413 9 8 6.1300 4.1510 1.2216 10 6 7.9540 3.3114 -0.1234 11 8 8.5634 4.5987 -0.2407 12 6 9.9144 4.6319 -0.3611 13 6 10.5695 5.8557 -0.4787 14 6 11.9272 5.8976 -0.6058 15 6 12.6676 4.6996 -0.6072 16 6 14.0736 4.7341 -0.7335 17 1 14.6016 3.8783 -1.1275 18 6 14.7827 5.8768 -0.3481 19 7 14.2211 6.7622 0.4354 20 14 16.5309 6.1391 -0.9517 21 1 16.5390 6.1953 -2.4356 22 1 17.0568 7.4159 -0.4055 23 1 17.3864 5.0148 -0.4943 24 6 11.9976 3.4666 -0.4878 25 6 10.6388 3.4420 -0.3667 26 7 4.2051 -0.0685 -0.0039 27 7 3.5394 -1.1659 0.0012 28 6 2.2212 -1.1892 0.0007 29 6 1.4907 -2.5073 0.0002 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.7144 2.1426 -0.0008 34 1 6.0812 1.5446 -0.8881 35 1 6.0800 1.5462 0.8918 36 1 6.4334 3.6886 2.0149 37 1 8.1841 2.7184 -1.0086 38 1 8.3391 2.8064 0.7624 39 1 10.0004 6.7737 -0.4741 40 1 12.4332 6.8470 -0.7013 41 1 14.7126 7.5547 0.7024 42 1 12.5577 2.5432 -0.4924 43 1 10.1234 2.4973 -0.2755 44 1 1.3153 -2.8251 -1.0275 45 1 2.0925 -3.2565 0.5145 46 1 0.5358 -2.3936 0.5133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161417600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:51 Heat of formation + Delta-G solvation = -54.395778 kcal Electronic energy + Delta-G solvation = -27947.369203 eV Core-core repulsion = 23803.067940 eV Total energy + Delta-G solvation = -4144.301263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67025 -39.46933 -38.74707 -37.18392 -36.00008 -35.28244 -33.33122 -33.18227 -31.15517 -29.75393 -29.13218 -28.88243 -28.23575 -26.36049 -24.65792 -23.80555 -22.73478 -22.14390 -20.72660 -20.62856 -18.92009 -17.90162 -17.35843 -17.09331 -17.07659 -16.42144 -16.05975 -15.96889 -15.25229 -15.07530 -14.58124 -14.28322 -14.10199 -14.02632 -13.94466 -13.72585 -13.58949 -13.35284 -13.19298 -13.00839 -12.85824 -12.47911 -12.28070 -12.14965 -11.80610 -11.60215 -11.56215 -11.42013 -11.13672 -11.03570 -10.85973 -10.62736 -10.23174 -10.17658 -9.98940 -9.95367 -9.84446 -9.34521 -9.29599 -9.02948 -7.65248 -7.04598 -6.72826 -4.26339 0.34048 0.62120 2.34876 2.78278 2.94561 3.08068 3.10480 3.11435 3.21918 3.62965 3.82374 3.94560 3.95600 4.11744 4.26928 4.32320 4.40841 4.61142 4.71703 4.77161 4.84033 4.88684 4.97861 5.02953 5.10044 5.14260 5.20333 5.27386 5.29972 5.39817 5.53828 5.64960 5.66307 5.80409 5.88861 6.05192 6.21610 6.68712 6.72487 6.97025 7.10290 7.17674 7.44313 7.54184 7.56711 7.77970 7.99793 8.19622 8.32924 8.42656 8.63786 8.89240 8.97615 10.21701 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.033617 B = 0.001542 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.719581 B =18156.431216 C =18813.568289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.051 4.051 3 C -0.137 4.137 4 C 0.266 3.734 5 O -0.285 6.285 6 C 0.039 3.961 7 C 0.113 3.887 8 H 0.117 0.883 9 O -0.543 6.543 10 C 0.043 3.957 11 O -0.315 6.315 12 C -0.012 4.012 13 C -0.117 4.117 14 C -0.134 4.134 15 C 0.089 3.911 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.798 5.798 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.198 4.198 25 C -0.167 4.167 26 N -0.303 5.303 27 N -0.203 5.203 28 C 0.032 3.968 29 C -0.097 4.097 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.374 0.626 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.281 0.719 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.761 -12.543 0.008 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.062 4.062 3 C -0.167 4.167 4 C 0.081 3.919 5 O -0.189 6.189 6 C -0.037 4.037 7 C 0.053 3.947 8 H 0.135 0.865 9 O -0.348 6.348 10 C -0.034 4.034 11 O -0.231 6.231 12 C -0.055 4.055 13 C -0.136 4.136 14 C -0.153 4.153 15 C 0.086 3.914 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.424 5.424 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.218 4.218 25 C -0.186 4.186 26 N -0.159 5.159 27 N -0.046 5.046 28 C -0.115 4.115 29 C -0.156 4.156 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.174 0.826 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.221 0.779 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.683 -12.202 -0.268 27.535 hybrid contribution 0.159 0.192 0.179 0.307 sum -24.523 -12.010 -0.090 27.306 Atomic orbital electron populations 1.20912 0.88565 1.04248 1.03701 1.20877 0.98396 0.91978 0.94938 1.21438 0.91252 1.00534 1.03450 1.21502 0.90268 0.87725 0.92383 1.86290 1.20048 1.25568 1.86996 1.23437 0.77253 0.98863 1.04113 1.21889 0.92065 0.91003 0.89705 0.86542 1.86664 1.82170 1.50971 1.14996 1.22895 0.91682 0.87201 1.01633 1.85867 1.19572 1.27132 1.90526 1.18600 0.80111 0.94434 1.12350 1.19834 0.94517 0.93879 1.05354 1.20978 0.91086 0.99439 1.03821 1.17603 0.93503 0.90675 0.89578 1.19438 0.91782 1.00195 1.37948 0.90561 1.25882 1.00511 0.95121 0.92667 1.69823 1.38805 1.09499 1.24268 0.86375 0.81818 0.78294 0.80258 1.18878 1.20371 1.19089 1.20559 0.92931 0.97373 1.10951 1.20404 0.95442 0.94862 1.07897 1.73084 1.31407 0.94419 1.17027 1.72718 1.06662 1.17912 1.07328 1.22667 0.92128 0.96706 1.00046 1.20660 0.99468 0.91872 1.03571 0.89598 0.89850 0.90300 0.82550 0.89852 0.90451 0.77883 0.91894 0.92376 0.88398 0.85646 0.90827 0.88711 0.88872 0.89978 0.90004 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.37 9.68 36.01 0.35 -0.02 16 2 C -0.05 -0.36 5.92 -104.28 -0.62 -0.98 16 3 C -0.14 -1.19 9.87 -39.05 -0.39 -1.58 16 4 C 0.27 3.09 7.57 -16.95 -0.13 2.96 16 5 O -0.29 -3.47 10.10 -23.65 -0.24 -3.70 16 6 C 0.04 0.44 4.96 37.16 0.18 0.63 16 7 C 0.11 1.47 3.53 -26.73 -0.09 1.38 16 8 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 9 O -0.54 -7.60 13.27 -49.80 -0.66 -8.26 16 10 C 0.04 0.65 4.37 37.16 0.16 0.82 16 11 O -0.32 -6.45 10.09 -23.58 -0.24 -6.69 16 12 C -0.01 -0.28 6.71 -38.78 -0.26 -0.54 16 13 C -0.12 -2.86 9.92 -39.83 -0.40 -3.26 16 14 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 15 C 0.09 2.38 5.57 -106.80 -0.60 1.79 16 16 C -0.46 -12.35 9.04 -37.83 -0.34 -12.69 16 17 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 18 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 19 N -0.80 -20.75 10.96 55.55 0.61 -20.14 16 20 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 24 C -0.20 -4.89 9.74 -39.25 -0.38 -5.28 16 25 C -0.17 -3.78 8.96 -39.83 -0.36 -4.14 16 26 N -0.30 -3.91 10.41 30.50 0.32 -3.60 16 27 N -0.20 -2.44 11.42 33.60 0.38 -2.05 16 28 C 0.03 0.28 6.86 -82.41 -0.57 -0.29 16 29 C -0.10 -0.46 9.82 36.00 0.35 -0.11 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.14 6.07 -51.93 -0.32 -0.17 16 32 H 0.08 0.19 8.11 -51.93 -0.42 -0.23 16 33 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 35 H 0.08 0.83 8.12 -51.93 -0.42 0.40 16 36 H 0.37 3.92 9.05 45.56 0.41 4.33 16 37 H 0.06 0.90 7.64 -51.93 -0.40 0.51 16 38 H 0.06 0.84 7.65 -51.93 -0.40 0.44 16 39 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 40 H 0.13 3.37 6.17 -52.49 -0.32 3.04 16 41 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 42 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 43 H 0.09 1.81 6.27 -52.49 -0.33 1.48 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.19 6.05 -51.93 -0.31 -0.12 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -32.58 389.65 -7.93 -40.50 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.44 Total: 7.72 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -3.50 Total: -23.37 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 1.31 Total: -25.79 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.14 Total: -18.65 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.58 -7.93 -40.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161417600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.892 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds