Wall clock time and date at job start Wed Apr 1 2020 02:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38222 * 119.77058 * 2 1 4 4 C 1.38613 * 120.46148 * 180.29453 * 3 2 1 5 5 C 1.38564 * 119.71575 * 359.41037 * 4 3 2 6 6 C 1.40948 * 119.82388 * 0.28230 * 5 4 3 7 7 C 1.38569 * 119.81880 * 0.02562 * 6 5 4 8 8 C 1.47818 * 105.88436 * 179.97438 * 6 5 4 9 9 O 1.21443 * 125.71062 * 179.97438 * 8 6 5 10 10 N 1.34526 * 108.57633 * 0.02562 * 8 6 5 11 11 C 1.46503 * 124.45811 * 180.02562 * 10 8 6 12 12 H 1.08994 * 109.46736 * 359.96489 * 11 10 8 13 13 C 1.52990 * 109.47474 * 119.97136 * 11 10 8 14 14 C 1.50703 * 109.46593 * 239.97239 * 11 10 8 15 15 O 1.21285 * 120.00371 * 359.97438 * 14 11 10 16 16 N 1.34780 * 119.99614 * 179.97438 * 14 11 10 17 17 C 1.46501 * 119.99872 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47109 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47321 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47465 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99904 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00131 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99713 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47346 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47293 * 120.00057 * 24 22 20 27 27 H 1.48503 * 109.46868 * 239.99511 * 24 22 20 28 28 C 1.34528 * 111.08238 * 359.97438 * 10 8 6 29 29 O 1.21447 * 125.70763 * 179.97438 * 28 10 8 30 30 H 1.08997 * 109.47359 * 270.30342 * 1 2 3 31 31 H 1.09002 * 109.47282 * 30.30443 * 1 2 3 32 32 H 1.09001 * 109.46952 * 150.30538 * 1 2 3 33 33 H 1.07998 * 119.77149 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.14606 * 179.69288 * 4 3 2 35 35 H 1.07995 * 120.14215 * 179.97438 * 7 6 5 36 36 H 1.09007 * 109.47498 * 59.99618 * 13 11 10 37 37 H 1.08994 * 109.47466 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47077 * 300.00081 * 13 11 10 39 39 H 0.96998 * 119.99972 * 359.97438 * 16 14 11 40 40 H 1.08998 * 109.47349 * 300.00453 * 17 16 14 41 41 H 1.09003 * 109.47012 * 60.00311 * 17 16 14 42 42 H 1.08998 * 109.47433 * 300.00460 * 18 17 16 43 43 H 1.09003 * 109.46881 * 60.00290 * 18 17 16 44 44 H 1.09007 * 109.47203 * 300.00349 * 19 18 17 45 45 H 1.09003 * 109.47026 * 60.00231 * 19 18 17 46 46 H 0.97007 * 119.99356 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1998 0.0000 4 6 3.5793 1.2165 -0.0061 5 6 4.2807 0.0215 0.0001 6 6 3.5809 -1.2020 0.0065 7 6 2.1952 -1.2032 0.0061 8 6 4.6142 -2.2590 0.0114 9 8 4.4045 -3.4552 0.0179 10 7 5.8256 -1.6741 0.0084 11 6 7.0973 -2.4015 0.0111 12 1 6.9023 -3.4739 0.0164 13 6 7.8974 -2.0347 -1.2403 14 6 7.8867 -2.0284 1.2394 15 8 7.4321 -1.2329 2.0340 16 7 9.0980 -2.5788 1.4549 17 6 9.8657 -2.2157 2.6486 18 6 11.1931 -2.9764 2.6522 19 6 11.9946 -2.5977 3.8992 20 6 13.3024 -3.3465 3.9024 21 1 13.5382 -4.0250 3.0959 22 6 14.1975 -3.1662 4.9355 23 7 13.9102 -2.3403 5.9179 24 14 15.8188 -4.0938 4.9391 25 1 15.9003 -4.9529 3.7306 26 1 16.9438 -3.1244 4.9346 27 1 15.9012 -4.9419 6.1553 28 6 5.7156 -0.3334 0.0016 29 8 6.6405 0.4537 -0.0020 30 1 -0.3634 0.0054 1.0276 31 1 -0.3634 0.8872 -0.5186 32 1 -0.3633 -0.8927 -0.5091 33 1 1.6458 2.1307 0.0004 34 1 4.1104 2.1569 -0.0111 35 1 1.6537 -2.1376 0.0107 36 1 8.0923 -0.9622 -1.2456 37 1 8.8437 -2.5755 -1.2380 38 1 7.3263 -2.3045 -2.1286 39 1 9.4614 -3.2153 0.8196 40 1 10.0609 -1.1434 2.6428 41 1 9.2956 -2.4764 3.5404 42 1 10.9974 -4.0486 2.6582 43 1 11.7633 -2.7161 1.7604 44 1 12.1903 -1.5253 3.8936 45 1 11.4241 -2.8583 4.7908 46 1 14.5398 -2.2137 6.6449 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171505871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:55 Heat of formation + Delta-G solvation = -68.541138 kcal Electronic energy + Delta-G solvation = -29017.656220 eV Core-core repulsion = 24872.741568 eV Total energy + Delta-G solvation = -4144.914652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.71072 -39.86936 -38.93357 -38.72403 -36.14428 -35.44441 -34.35015 -33.35410 -32.32409 -31.41826 -30.67678 -27.91134 -26.87079 -25.43432 -24.89517 -23.73968 -22.61571 -21.95811 -20.84568 -20.52966 -19.60241 -18.07548 -17.78344 -17.08362 -16.57575 -16.32034 -16.15364 -15.65717 -15.59106 -15.39834 -14.87712 -14.53056 -14.44801 -14.39940 -14.30250 -14.18234 -14.16321 -13.70454 -13.06216 -12.84631 -12.71453 -12.65290 -12.46320 -12.32295 -12.27635 -11.93548 -11.84212 -11.68284 -10.92733 -10.79862 -10.75275 -10.59849 -10.52834 -10.40984 -9.88889 -9.80886 -9.66676 -9.42045 -9.32079 -9.10655 -8.86275 -8.38057 -6.02374 -4.05533 -0.28500 0.52407 1.67661 1.88855 2.58553 2.66984 3.14615 3.20247 3.29797 3.35946 3.37628 3.41127 3.98061 4.16056 4.23377 4.43295 4.47607 4.54629 4.55383 4.58529 4.66566 4.84992 4.92489 5.03584 5.05761 5.28422 5.30645 5.33527 5.40697 5.44952 5.49164 5.61541 5.68366 5.74431 5.75420 5.81141 6.13558 6.14197 6.38595 6.40990 6.57583 6.78265 6.96221 6.97841 7.40179 7.58083 7.62970 7.74936 7.96262 8.22587 8.37329 9.01308 9.58772 11.08938 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.001836 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.956278 B =15248.645758 C =15497.601553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C -0.098 4.098 4 C -0.041 4.041 5 C -0.137 4.137 6 C -0.134 4.134 7 C -0.046 4.046 8 C 0.579 3.421 9 O -0.467 6.467 10 N -0.561 5.561 11 C 0.120 3.880 12 H 0.133 0.867 13 C -0.164 4.164 14 C 0.502 3.498 15 O -0.526 6.526 16 N -0.718 5.718 17 C 0.118 3.882 18 C -0.120 4.120 19 C 0.023 3.977 20 C -0.522 4.522 21 H 0.056 0.944 22 C 0.056 3.944 23 N -0.893 5.893 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.580 3.420 29 O -0.442 6.442 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.400 0.600 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.489 4.591 -18.124 34.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.066 4.066 3 C -0.116 4.116 4 C -0.060 4.060 5 C -0.141 4.141 6 C -0.137 4.137 7 C -0.065 4.065 8 C 0.369 3.631 9 O -0.338 6.338 10 N -0.303 5.303 11 C 0.015 3.985 12 H 0.151 0.849 13 C -0.222 4.222 14 C 0.285 3.715 15 O -0.401 6.401 16 N -0.369 5.369 17 C -0.005 4.005 18 C -0.158 4.158 19 C -0.015 4.015 20 C -0.560 4.560 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.532 5.532 24 Si 0.721 3.279 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 C 0.368 3.632 29 O -0.311 6.311 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.037 0.963 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -28.251 4.991 -17.359 33.532 hybrid contribution 1.271 -0.858 -0.037 1.534 sum -26.980 4.133 -17.397 32.367 Atomic orbital electron populations 1.20891 0.89713 1.03668 1.03259 1.20183 0.96954 0.92364 0.97127 1.21333 0.93369 0.98375 0.98516 1.20794 0.93561 0.96966 0.94667 1.20564 0.93483 0.94952 1.05068 1.20478 0.94539 0.93647 1.05073 1.20642 0.90978 0.98831 0.96032 1.18331 0.82652 0.87799 0.74348 1.90804 1.83844 1.14717 1.44485 1.46213 1.07448 1.08695 1.67929 1.21246 0.82369 0.98790 0.96064 0.84945 1.22157 1.00367 1.04718 0.94931 1.20382 0.82398 0.81775 0.86941 1.90742 1.69270 1.33572 1.46544 1.46082 1.18006 1.46043 1.26772 1.21698 0.92655 1.00362 0.85762 1.21895 0.93047 0.98814 1.02089 1.19041 0.94126 0.97198 0.91095 1.21235 1.02166 1.25418 1.07212 0.92555 1.25038 0.98517 0.95393 0.95577 1.69983 1.36218 1.36225 1.10804 0.86516 0.83704 0.79713 0.77933 1.19753 1.20994 1.21009 1.18199 0.88856 0.81368 0.74751 1.90807 1.45008 1.53210 1.42114 0.90208 0.90724 0.90764 0.84074 0.83885 0.84053 0.90115 0.89453 0.90736 0.76627 0.91528 0.91668 0.92634 0.92599 0.96227 0.96263 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.32 10.00 36.00 0.36 0.04 16 2 C -0.07 -0.37 5.89 -104.49 -0.62 -0.98 16 3 C -0.10 -0.53 9.68 -39.45 -0.38 -0.92 16 4 C -0.04 -0.32 10.09 -39.32 -0.40 -0.72 16 5 C -0.14 -1.48 6.41 -104.83 -0.67 -2.15 16 6 C -0.13 -1.37 6.41 -104.83 -0.67 -2.05 16 7 C -0.05 -0.34 9.74 -39.32 -0.38 -0.72 16 8 C 0.58 7.20 8.02 -12.45 -0.10 7.10 16 9 O -0.47 -6.49 17.43 5.42 0.09 -6.39 16 10 N -0.56 -7.27 2.31 -111.75 -0.26 -7.53 16 11 C 0.12 1.44 3.20 -69.08 -0.22 1.21 16 12 H 0.13 1.33 7.58 -51.93 -0.39 0.94 16 13 C -0.16 -1.52 9.10 37.15 0.34 -1.19 16 14 C 0.50 7.82 6.88 -10.98 -0.08 7.75 16 15 O -0.53 -10.44 14.90 -8.65 -0.13 -10.56 16 16 N -0.72 -10.37 5.45 -60.29 -0.33 -10.70 16 17 C 0.12 2.11 5.67 -4.04 -0.02 2.08 16 18 C -0.12 -2.35 5.27 -26.74 -0.14 -2.50 16 19 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 20 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 24 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.58 7.95 6.67 -12.45 -0.08 7.87 16 29 O -0.44 -7.22 15.56 -8.79 -0.14 -7.35 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.12 8.08 -51.93 -0.42 -0.30 16 32 H 0.07 0.16 8.08 -51.93 -0.42 -0.26 16 33 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.08 0.92 6.84 -51.92 -0.35 0.56 16 37 H 0.09 0.63 7.57 -51.93 -0.39 0.24 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.40 4.42 7.89 -40.82 -0.32 4.10 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 393.77 15.07 5.93 5.93 Total: -1.00 -36.71 393.77 -9.22 -45.92 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.50 Total: -1.49 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -3.61 Total: 1.84 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.15 Total: -44.47 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.17 Total: -24.31 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.71 -9.22 -45.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.616 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds