Wall clock time and date at job start Wed Apr 1 2020 02:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38222 * 119.77058 * 2 1 4 4 C 1.38613 * 120.46148 * 180.29453 * 3 2 1 5 5 C 1.38564 * 119.71575 * 359.41037 * 4 3 2 6 6 C 1.40948 * 119.82388 * 0.28230 * 5 4 3 7 7 C 1.38569 * 119.81880 * 0.02562 * 6 5 4 8 8 C 1.47818 * 105.88436 * 179.97438 * 6 5 4 9 9 O 1.21443 * 125.71062 * 179.97438 * 8 6 5 10 10 N 1.34526 * 108.57633 * 0.02562 * 8 6 5 11 11 C 1.46503 * 124.45811 * 180.02562 * 10 8 6 12 12 H 1.08994 * 109.46736 * 359.96489 * 11 10 8 13 13 C 1.52990 * 109.47474 * 119.97136 * 11 10 8 14 14 C 1.50703 * 109.46593 * 239.97239 * 11 10 8 15 15 O 1.21285 * 120.00371 * 359.97438 * 14 11 10 16 16 N 1.34780 * 119.99614 * 179.97438 * 14 11 10 17 17 C 1.46501 * 119.99872 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47109 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47321 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47465 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99904 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00131 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99713 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47346 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47293 * 120.00057 * 24 22 20 27 27 H 1.48503 * 109.46868 * 239.99511 * 24 22 20 28 28 C 1.34528 * 111.08238 * 359.97438 * 10 8 6 29 29 O 1.21447 * 125.70763 * 179.97438 * 28 10 8 30 30 H 1.08997 * 109.47359 * 270.30342 * 1 2 3 31 31 H 1.09002 * 109.47282 * 30.30443 * 1 2 3 32 32 H 1.09001 * 109.46952 * 150.30538 * 1 2 3 33 33 H 1.07998 * 119.77149 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.14606 * 179.69288 * 4 3 2 35 35 H 1.07995 * 120.14215 * 179.97438 * 7 6 5 36 36 H 1.09007 * 109.47498 * 59.99618 * 13 11 10 37 37 H 1.08994 * 109.47466 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47077 * 300.00081 * 13 11 10 39 39 H 0.96998 * 119.99972 * 359.97438 * 16 14 11 40 40 H 1.08998 * 109.47349 * 300.00453 * 17 16 14 41 41 H 1.09003 * 109.47012 * 60.00311 * 17 16 14 42 42 H 1.08998 * 109.47433 * 300.00460 * 18 17 16 43 43 H 1.09003 * 109.46881 * 60.00290 * 18 17 16 44 44 H 1.09007 * 109.47203 * 300.00349 * 19 18 17 45 45 H 1.09003 * 109.47026 * 60.00231 * 19 18 17 46 46 H 0.97007 * 119.99356 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1998 0.0000 4 6 3.5793 1.2165 -0.0061 5 6 4.2807 0.0215 0.0001 6 6 3.5809 -1.2020 0.0065 7 6 2.1952 -1.2032 0.0061 8 6 4.6142 -2.2590 0.0114 9 8 4.4045 -3.4552 0.0179 10 7 5.8256 -1.6741 0.0084 11 6 7.0973 -2.4015 0.0111 12 1 6.9023 -3.4739 0.0164 13 6 7.8974 -2.0347 -1.2403 14 6 7.8867 -2.0284 1.2394 15 8 7.4321 -1.2329 2.0340 16 7 9.0980 -2.5788 1.4549 17 6 9.8657 -2.2157 2.6486 18 6 11.1931 -2.9764 2.6522 19 6 11.9946 -2.5977 3.8992 20 6 13.3024 -3.3465 3.9024 21 1 13.5382 -4.0250 3.0959 22 6 14.1975 -3.1662 4.9355 23 7 13.9102 -2.3403 5.9179 24 14 15.8188 -4.0938 4.9391 25 1 15.9003 -4.9529 3.7306 26 1 16.9438 -3.1244 4.9346 27 1 15.9012 -4.9419 6.1553 28 6 5.7156 -0.3334 0.0016 29 8 6.6405 0.4537 -0.0020 30 1 -0.3634 0.0054 1.0276 31 1 -0.3634 0.8872 -0.5186 32 1 -0.3633 -0.8927 -0.5091 33 1 1.6458 2.1307 0.0004 34 1 4.1104 2.1569 -0.0111 35 1 1.6537 -2.1376 0.0107 36 1 8.0923 -0.9622 -1.2456 37 1 8.8437 -2.5755 -1.2380 38 1 7.3263 -2.3045 -2.1286 39 1 9.4614 -3.2153 0.8196 40 1 10.0609 -1.1434 2.6428 41 1 9.2956 -2.4764 3.5404 42 1 10.9974 -4.0486 2.6582 43 1 11.7633 -2.7161 1.7604 44 1 12.1903 -1.5253 3.8936 45 1 11.4241 -2.8583 4.7908 46 1 14.5398 -2.2137 6.6449 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171505871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:54 Heat of formation + Delta-G solvation = -92.212156 kcal Electronic energy + Delta-G solvation = -29018.682672 eV Core-core repulsion = 24872.741568 eV Total energy + Delta-G solvation = -4145.941104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.60778 -40.98796 -39.83424 -39.64264 -37.25167 -36.94155 -35.41101 -34.98130 -33.29010 -32.65636 -31.63852 -28.72676 -28.37897 -26.31619 -25.85907 -25.09933 -23.81403 -22.63449 -22.39759 -21.72528 -20.70079 -18.99262 -18.83125 -18.46830 -18.02517 -17.39559 -17.20167 -16.87892 -16.62267 -16.43887 -16.34490 -15.88017 -15.60760 -15.21886 -15.14512 -15.09498 -15.01548 -14.62908 -14.31281 -13.98787 -13.79087 -13.62184 -13.45274 -13.23626 -13.17857 -12.98199 -12.95307 -12.79247 -12.58435 -12.51225 -12.37429 -11.74530 -11.71949 -11.63750 -11.49173 -11.40413 -11.23475 -10.76077 -10.58142 -10.26923 -10.25173 -9.93762 -8.21307 -6.33039 -1.05365 -0.06717 0.92305 0.97688 1.35075 1.40833 1.41043 1.54430 1.68853 2.08924 2.40921 2.49851 2.57741 3.12624 3.15534 3.41510 3.55225 3.66524 3.72480 3.83497 4.00579 4.07485 4.11245 4.14375 4.15650 4.33307 4.49183 4.53942 4.62562 4.69456 4.82744 4.88008 4.88851 4.90121 4.91329 4.99602 5.06436 5.13285 5.26540 5.29995 5.36629 5.46979 5.49492 5.67064 5.68621 5.81746 6.02673 6.19183 6.31758 6.49627 6.84613 7.02618 7.36788 8.91122 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.001836 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.956278 B =15248.645758 C =15497.601553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.055 4.055 3 C -0.086 4.086 4 C -0.042 4.042 5 C -0.166 4.166 6 C -0.152 4.152 7 C -0.045 4.045 8 C 0.578 3.422 9 O -0.489 6.489 10 N -0.567 5.567 11 C 0.120 3.880 12 H 0.155 0.845 13 C -0.156 4.156 14 C 0.498 3.502 15 O -0.574 6.574 16 N -0.703 5.703 17 C 0.132 3.868 18 C -0.100 4.100 19 C 0.022 3.978 20 C -0.540 4.540 21 H 0.069 0.931 22 C -0.005 4.005 23 N -0.936 5.936 24 Si 0.969 3.031 25 H -0.257 1.257 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.573 3.427 29 O -0.484 6.484 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.179 0.821 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.420 0.580 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.071 0.929 44 H -0.009 1.009 45 H -0.009 1.009 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.259 3.747 -20.117 36.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.055 4.055 3 C -0.104 4.104 4 C -0.061 4.061 5 C -0.170 4.170 6 C -0.156 4.156 7 C -0.063 4.063 8 C 0.369 3.631 9 O -0.362 6.362 10 N -0.309 5.309 11 C 0.016 3.984 12 H 0.172 0.828 13 C -0.214 4.214 14 C 0.283 3.717 15 O -0.453 6.453 16 N -0.356 5.356 17 C 0.008 3.992 18 C -0.138 4.138 19 C -0.016 4.016 20 C -0.578 4.578 21 H 0.087 0.913 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.794 3.206 25 H -0.181 1.181 26 H -0.206 1.206 27 H -0.206 1.206 28 C 0.364 3.636 29 O -0.356 6.356 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.196 0.804 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.114 0.886 39 H 0.257 0.743 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.009 0.991 45 H 0.010 0.990 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -30.031 4.108 -19.402 35.989 hybrid contribution 1.673 -0.527 0.607 1.856 sum -28.358 3.581 -18.795 34.209 Atomic orbital electron populations 1.21001 0.87089 1.05138 1.04221 1.20605 0.98644 0.91507 0.94724 1.21775 0.92247 1.00029 0.96304 1.21102 0.94805 0.96310 0.93886 1.20529 0.91747 0.96462 1.08245 1.20442 0.95365 0.92323 1.07432 1.20986 0.89812 1.00546 0.94973 1.18700 0.82991 0.87972 0.73443 1.90775 1.84145 1.15512 1.45777 1.46378 1.07982 1.08803 1.67743 1.21411 0.82152 0.99855 0.95001 0.82766 1.22169 1.01455 1.03512 0.94261 1.21087 0.82370 0.80711 0.87493 1.90718 1.70418 1.35701 1.48452 1.45803 1.17583 1.46179 1.25989 1.21261 0.92236 0.98967 0.86753 1.21600 0.92868 0.99770 0.99595 1.18960 0.94377 0.95291 0.92937 1.21708 1.02967 1.25562 1.07532 0.91315 1.26057 1.02756 0.96325 0.95139 1.70132 1.37826 1.37974 1.11691 0.85331 0.78457 0.78342 0.78490 1.18060 1.20605 1.20603 1.18760 0.89949 0.81345 0.73505 1.90765 1.46437 1.54027 1.44389 0.89265 0.88819 0.89861 0.80353 0.83055 0.82474 0.92428 0.86961 0.88639 0.74250 0.93478 0.93268 0.90962 0.90992 0.99100 0.99041 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.16 10.00 71.23 0.71 0.55 16 2 C -0.05 -0.44 5.89 -19.78 -0.12 -0.55 16 3 C -0.09 -0.68 9.68 22.36 0.22 -0.47 16 4 C -0.04 -0.63 10.09 22.44 0.23 -0.40 16 5 C -0.17 -3.67 6.41 -20.00 -0.13 -3.80 16 6 C -0.15 -3.11 6.41 -20.00 -0.13 -3.24 16 7 C -0.04 -0.58 9.74 22.44 0.22 -0.37 16 8 C 0.58 14.66 8.02 86.82 0.70 15.36 16 9 O -0.49 -13.66 17.43 -3.54 -0.06 -13.72 16 10 N -0.57 -15.25 2.31 -744.38 -1.72 -16.97 16 11 C 0.12 2.88 3.20 44.24 0.14 3.02 16 12 H 0.15 2.97 7.58 -2.39 -0.02 2.95 16 13 C -0.16 -2.80 9.10 71.98 0.65 -2.14 16 14 C 0.50 15.95 6.88 87.66 0.60 16.56 16 15 O -0.57 -24.08 14.90 10.54 0.16 -23.92 16 16 N -0.70 -20.23 5.45 -463.05 -2.52 -22.75 16 17 C 0.13 4.86 5.67 86.38 0.49 5.35 16 18 C -0.10 -3.92 5.27 30.59 0.16 -3.75 16 19 C 0.02 1.17 4.97 29.85 0.15 1.32 16 20 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 21 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 22 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 23 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 24 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 28 C 0.57 16.67 6.67 86.82 0.58 17.25 16 29 O -0.48 -16.96 15.56 10.03 0.16 -16.80 16 30 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.09 -0.16 8.08 -2.39 -0.02 -0.18 16 32 H 0.08 0.03 8.08 -2.39 -0.02 0.01 16 33 H 0.18 0.09 8.06 -2.91 -0.02 0.07 16 34 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.06 1.34 6.84 -2.38 -0.02 1.32 16 37 H 0.11 1.40 7.57 -2.39 -0.02 1.38 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.42 8.60 7.89 -92.71 -0.73 7.86 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 44 H -0.01 -0.55 8.14 -2.38 -0.02 -0.56 16 45 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -84.50 393.77 3.77 -80.73 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.28 Total: 10.15 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.17 Total: 14.68 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -3.96 Total: -97.36 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: 0.25 Total: -54.45 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -84.50 3.77 -80.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.478 kcal (2) G-P(sol) polarization free energy of solvation -84.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds