Wall clock time and date at job start Wed Apr 1 2020 03:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 110.29323 * 2 1 4 4 N 1.34779 * 120.00146 * 59.29416 * 3 2 1 5 5 O 1.21283 * 120.00052 * 239.30318 * 3 2 1 6 6 C 1.54611 * 110.32982 * 237.86059 * 2 1 3 7 7 C 1.55211 * 102.71596 * 219.18200 * 6 2 1 8 8 N 1.48112 * 103.26498 * 37.39678 * 7 6 2 9 9 C 1.34778 * 127.03468 * 140.65043 * 8 7 6 10 10 O 1.21721 * 120.00636 * 180.02562 * 9 8 7 11 11 C 1.46259 * 119.99821 * 0.04055 * 9 8 7 12 12 C 1.35026 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.46953 * 120.00028 * 179.97438 * 12 11 9 14 14 C 1.40030 * 120.10162 * 359.72805 * 13 12 11 15 15 C 1.37600 * 119.89558 * 179.69098 * 14 13 12 16 16 C 1.39179 * 120.10277 * 0.60793 * 15 14 13 17 17 O 1.35569 * 119.90073 * 179.69254 * 16 15 14 18 18 C 1.34777 * 117.00234 * 174.41877 * 17 16 15 19 19 H 1.08004 * 119.99585 * 5.05783 * 18 17 16 20 20 C 1.38722 * 120.00413 * 185.05768 * 18 17 16 21 21 N 1.31512 * 119.99209 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47172 * 60.00155 * 22 20 18 24 24 H 1.48497 * 109.46955 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46997 * 300.00130 * 22 20 18 26 26 C 1.39179 * 120.19944 * 359.66642 * 16 15 14 27 27 C 1.37597 * 120.10199 * 0.02562 * 26 16 15 28 28 C 1.47483 * 105.93608 * 320.68539 * 8 7 6 29 29 H 1.08996 * 109.46848 * 60.70131 * 1 2 3 30 30 H 1.08997 * 109.47126 * 180.70400 * 1 2 3 31 31 H 1.08996 * 109.46854 * 300.70696 * 1 2 3 32 32 H 0.96998 * 120.00240 * 0.02562 * 4 3 2 33 33 H 0.97004 * 119.99968 * 179.73032 * 4 3 2 34 34 H 1.09007 * 110.73911 * 337.49249 * 6 2 1 35 35 H 1.09000 * 110.74273 * 100.81696 * 6 2 1 36 36 H 1.08993 * 110.67568 * 278.93896 * 7 6 2 37 37 H 1.09005 * 110.77664 * 155.90281 * 7 6 2 38 38 H 1.08005 * 119.99990 * 359.97438 * 11 9 8 39 39 H 1.07996 * 119.99355 * 0.02562 * 12 11 9 40 40 H 1.07998 * 120.04865 * 0.02562 * 14 13 12 41 41 H 1.08003 * 119.94735 * 180.31534 * 15 14 13 42 42 H 0.97000 * 119.98950 * 180.02562 * 21 20 18 43 43 H 1.08002 * 119.94485 * 180.02562 * 26 16 15 44 44 H 1.08003 * 120.05057 * 179.97438 * 27 26 16 45 45 H 1.09003 * 109.91139 * 266.08962 * 28 8 7 46 46 H 1.08993 * 109.91784 * 144.80436 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0527 1.4134 0.0000 4 7 1.7274 2.2522 1.0036 5 8 2.7659 1.7963 -0.9032 6 6 2.0672 -0.7713 -1.2276 7 6 3.2864 -1.5348 -0.6448 8 7 2.8298 -1.9203 0.7104 9 6 3.0645 -3.0859 1.3451 10 8 2.6245 -3.2684 2.4653 11 6 3.8482 -4.1314 0.6880 12 6 4.0838 -5.2990 1.3241 13 6 4.8707 -6.3497 0.6636 14 6 5.3725 -6.1446 -0.6275 15 6 6.1142 -7.1288 -1.2394 16 6 6.3553 -8.3317 -0.5821 17 8 7.0813 -9.3010 -1.1913 18 6 7.3777 -10.3941 -0.4607 19 1 6.9711 -10.5054 0.5337 20 6 8.2048 -11.3762 -0.9858 21 7 8.7001 -11.2403 -2.1964 22 14 8.6148 -12.8915 0.0266 23 1 7.3631 -13.6175 0.3603 24 1 9.5104 -13.7815 -0.7550 25 1 9.2974 -12.4798 1.2796 26 6 5.8537 -8.5422 0.6990 27 6 5.1163 -7.5612 1.3212 28 6 2.0650 -0.7681 1.2230 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5248 0.8836 32 1 1.1572 1.9461 1.7260 33 1 2.0671 3.1609 1.0056 34 1 1.3182 -1.4683 -1.6036 35 1 2.3807 -0.0807 -2.0105 36 1 4.1571 -0.8818 -0.5860 37 1 3.5101 -2.4192 -1.2414 38 1 4.2385 -3.9696 -0.3059 39 1 3.6931 -5.4608 2.3178 40 1 5.1821 -5.2132 -1.1400 41 1 6.5059 -6.9695 -2.2332 42 1 9.2782 -11.9272 -2.5637 43 1 6.0437 -9.4770 1.2054 44 1 4.7272 -7.7256 2.3152 45 1 2.7167 -0.1220 1.8113 46 1 1.2333 -1.1171 1.8350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280105963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:00 Heat of formation + Delta-G solvation = -58.567404 kcal Electronic energy + Delta-G solvation = -28339.433405 eV Core-core repulsion = 24194.951247 eV Total energy + Delta-G solvation = -4144.482158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.05487 -39.43062 -39.09781 -37.36420 -36.81231 -34.40588 -33.28651 -32.91942 -32.27288 -30.43708 -29.83349 -28.59607 -26.98218 -25.65437 -24.43134 -23.13952 -22.74359 -22.05984 -20.38453 -19.73763 -18.88249 -18.22268 -17.66170 -17.33357 -17.21299 -16.91671 -15.71224 -15.60190 -15.33403 -14.82272 -14.70225 -14.49382 -14.41678 -13.98597 -13.84661 -13.76935 -13.57621 -13.22144 -13.13678 -12.92256 -12.85636 -12.61113 -12.43967 -11.91148 -11.77965 -11.75822 -11.57590 -11.43327 -11.31824 -11.11224 -11.08307 -10.70670 -10.55092 -10.29811 -10.16389 -9.81748 -9.61435 -9.50640 -8.93495 -8.79778 -8.38819 -7.12172 -6.65596 -4.20427 1.04706 2.13150 2.14810 2.53323 2.81546 3.03516 3.03884 3.05566 3.07827 3.52489 3.81927 3.88405 4.11985 4.28794 4.50446 4.56533 4.79491 4.81828 4.91629 4.93611 5.03521 5.09320 5.22875 5.24652 5.29545 5.35133 5.46707 5.52206 5.58224 5.58687 5.66414 5.68317 5.73333 5.98339 6.04064 6.11206 6.29733 6.45727 6.50500 6.60674 6.78442 6.82130 6.91105 7.12289 7.23012 7.27176 7.45793 7.63304 7.77818 7.79603 8.23736 8.78977 9.45874 10.50878 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.029983 B = 0.001667 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.635971 B =16796.545259 C =17379.536309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C 0.533 3.467 4 N -0.853 5.853 5 O -0.535 6.535 6 C -0.118 4.118 7 C 0.100 3.900 8 N -0.623 5.623 9 C 0.577 3.423 10 O -0.558 6.558 11 C -0.281 4.281 12 C 0.041 3.959 13 C -0.199 4.199 14 C -0.042 4.042 15 C -0.199 4.199 16 C 0.167 3.833 17 O -0.162 6.162 18 C -0.394 4.394 19 H 0.097 0.903 20 C 0.042 3.958 21 N -0.851 5.851 22 Si 0.945 3.055 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.268 1.268 26 C -0.242 4.242 27 C -0.034 4.034 28 C 0.121 3.879 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.402 0.598 33 H 0.403 0.597 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.275 0.725 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.065 0.935 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.708 21.513 5.045 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 C 0.317 3.683 4 N -0.417 5.417 5 O -0.411 6.411 6 C -0.157 4.157 7 C -0.023 4.023 8 N -0.357 5.357 9 C 0.373 3.627 10 O -0.438 6.438 11 C -0.302 4.302 12 C 0.021 3.979 13 C -0.201 4.201 14 C -0.060 4.060 15 C -0.219 4.219 16 C 0.111 3.889 17 O -0.062 6.062 18 C -0.469 4.469 19 H 0.114 0.886 20 C -0.165 4.165 21 N -0.484 5.484 22 Si 0.769 3.231 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.192 1.192 26 C -0.262 4.262 27 C -0.053 4.053 28 C -0.003 4.003 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.231 0.769 33 H 0.234 0.766 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.085 0.915 43 H 0.149 0.851 44 H 0.132 0.868 45 H 0.083 0.917 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.187 21.201 4.601 25.921 hybrid contribution 0.090 -0.392 0.865 0.954 sum -14.097 20.808 5.466 25.722 Atomic orbital electron populations 1.21863 0.91141 1.03657 1.02660 1.21735 0.97967 0.92254 0.98414 1.20285 0.79448 0.87176 0.81381 1.43852 1.54777 1.16319 1.26717 1.90747 1.36967 1.77372 1.35997 1.22845 0.97657 0.98907 0.96258 1.22646 0.96993 0.99821 0.82870 1.48594 1.54268 1.14779 1.18070 1.18082 0.79482 0.80379 0.84794 1.90779 1.53509 1.80060 1.19500 1.22383 1.09650 0.95503 1.02615 1.22288 0.88007 0.90477 0.97158 1.18443 1.09173 0.95851 0.96584 1.20875 0.94410 0.97301 0.93444 1.20154 1.07074 0.92830 1.01797 1.19615 0.89954 0.88585 0.90794 1.83901 1.58872 1.24742 1.38725 1.21431 1.30224 0.95405 0.99847 0.88578 1.25398 0.95357 0.99154 0.96547 1.70008 1.29364 1.34479 1.14548 0.85711 0.78990 0.79387 0.79031 1.19248 1.20074 1.19247 1.21098 1.06437 1.01591 0.97042 1.20984 0.94503 0.91861 0.97911 1.21913 0.96558 0.87604 0.94219 0.91466 0.90720 0.91871 0.76905 0.76628 0.89716 0.88026 0.90663 0.89151 0.85790 0.85931 0.86467 0.86103 0.91532 0.85115 0.86806 0.91661 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.12 37.16 0.30 -0.36 16 2 C -0.10 -0.70 0.80 -154.28 -0.12 -0.82 16 3 C 0.53 4.20 6.57 -10.99 -0.07 4.13 16 4 N -0.85 -3.64 8.70 31.22 0.27 -3.37 16 5 O -0.54 -6.32 16.24 5.55 0.09 -6.23 16 6 C -0.12 -0.92 6.02 -24.71 -0.15 -1.07 16 7 C 0.10 0.91 6.91 -1.98 -0.01 0.90 16 8 N -0.62 -7.02 3.29 -171.29 -0.56 -7.59 16 9 C 0.58 8.36 7.81 -13.04 -0.10 8.26 16 10 O -0.56 -9.76 16.57 5.17 0.09 -9.68 16 11 C -0.28 -3.93 8.91 -37.50 -0.33 -4.26 16 12 C 0.04 0.62 9.45 -37.20 -0.35 0.27 16 13 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 14 C -0.04 -0.72 9.40 -39.14 -0.37 -1.08 16 15 C -0.20 -3.98 9.97 -39.46 -0.39 -4.37 16 16 C 0.17 3.83 6.66 -38.88 -0.26 3.57 16 17 O -0.16 -4.37 9.74 0.76 0.01 -4.37 16 18 C -0.39 -10.43 9.48 30.91 0.29 -10.13 16 19 H 0.10 2.33 5.18 -52.48 -0.27 2.06 16 20 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 21 N -0.85 -23.77 13.67 55.48 0.76 -23.01 16 22 Si 0.94 19.46 29.55 -169.99 -5.02 14.44 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.24 -4.99 9.14 -39.47 -0.36 -5.35 16 27 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 28 C 0.12 1.06 6.24 -2.98 -0.02 1.04 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.20 7.58 -51.93 -0.39 -0.20 16 32 H 0.40 0.73 8.26 -40.82 -0.34 0.39 16 33 H 0.40 1.37 8.93 -40.82 -0.36 1.00 16 34 H 0.08 0.58 7.87 -51.93 -0.41 0.18 16 35 H 0.10 0.85 6.82 -51.93 -0.35 0.50 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.75 6.64 -51.93 -0.34 0.41 16 38 H 0.12 1.52 4.66 -52.48 -0.24 1.28 16 39 H 0.12 1.85 7.52 -52.49 -0.39 1.45 16 40 H 0.12 1.63 6.16 -52.49 -0.32 1.31 16 41 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 43 H 0.13 2.66 5.62 -52.49 -0.29 2.36 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.07 0.56 7.65 -51.93 -0.40 0.16 16 46 H 0.09 0.76 7.59 -51.93 -0.39 0.37 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -33.68 385.03 -7.39 -41.07 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.77 Total: 6.22 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.05 Total: -13.29 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.47 Total: -33.97 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.18 Total: -20.27 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.68 -7.39 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280105963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.496 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds