Wall clock time and date at job start Wed Apr 1 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 110.29323 * 2 1 4 4 N 1.34779 * 120.00146 * 59.29416 * 3 2 1 5 5 O 1.21283 * 120.00052 * 239.30318 * 3 2 1 6 6 C 1.54611 * 110.32982 * 237.86059 * 2 1 3 7 7 C 1.55211 * 102.71596 * 219.18200 * 6 2 1 8 8 N 1.48112 * 103.26498 * 37.39678 * 7 6 2 9 9 C 1.34778 * 127.03468 * 140.65043 * 8 7 6 10 10 O 1.21721 * 120.00636 * 180.02562 * 9 8 7 11 11 C 1.46259 * 119.99821 * 0.04055 * 9 8 7 12 12 C 1.35026 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.46953 * 120.00028 * 179.97438 * 12 11 9 14 14 C 1.40030 * 120.10162 * 359.72805 * 13 12 11 15 15 C 1.37600 * 119.89558 * 179.69098 * 14 13 12 16 16 C 1.39179 * 120.10277 * 0.60793 * 15 14 13 17 17 O 1.35569 * 119.90073 * 179.69254 * 16 15 14 18 18 C 1.34777 * 117.00234 * 174.41877 * 17 16 15 19 19 H 1.08004 * 119.99585 * 5.05783 * 18 17 16 20 20 C 1.38722 * 120.00413 * 185.05768 * 18 17 16 21 21 N 1.31512 * 119.99209 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47172 * 60.00155 * 22 20 18 24 24 H 1.48497 * 109.46955 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46997 * 300.00130 * 22 20 18 26 26 C 1.39179 * 120.19944 * 359.66642 * 16 15 14 27 27 C 1.37597 * 120.10199 * 0.02562 * 26 16 15 28 28 C 1.47483 * 105.93608 * 320.68539 * 8 7 6 29 29 H 1.08996 * 109.46848 * 60.70131 * 1 2 3 30 30 H 1.08997 * 109.47126 * 180.70400 * 1 2 3 31 31 H 1.08996 * 109.46854 * 300.70696 * 1 2 3 32 32 H 0.96998 * 120.00240 * 0.02562 * 4 3 2 33 33 H 0.97004 * 119.99968 * 179.73032 * 4 3 2 34 34 H 1.09007 * 110.73911 * 337.49249 * 6 2 1 35 35 H 1.09000 * 110.74273 * 100.81696 * 6 2 1 36 36 H 1.08993 * 110.67568 * 278.93896 * 7 6 2 37 37 H 1.09005 * 110.77664 * 155.90281 * 7 6 2 38 38 H 1.08005 * 119.99990 * 359.97438 * 11 9 8 39 39 H 1.07996 * 119.99355 * 0.02562 * 12 11 9 40 40 H 1.07998 * 120.04865 * 0.02562 * 14 13 12 41 41 H 1.08003 * 119.94735 * 180.31534 * 15 14 13 42 42 H 0.97000 * 119.98950 * 180.02562 * 21 20 18 43 43 H 1.08002 * 119.94485 * 180.02562 * 26 16 15 44 44 H 1.08003 * 120.05057 * 179.97438 * 27 26 16 45 45 H 1.09003 * 109.91139 * 266.08962 * 28 8 7 46 46 H 1.08993 * 109.91784 * 144.80436 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0527 1.4134 0.0000 4 7 1.7274 2.2522 1.0036 5 8 2.7659 1.7963 -0.9032 6 6 2.0672 -0.7713 -1.2276 7 6 3.2864 -1.5348 -0.6448 8 7 2.8298 -1.9203 0.7104 9 6 3.0645 -3.0859 1.3451 10 8 2.6245 -3.2684 2.4653 11 6 3.8482 -4.1314 0.6880 12 6 4.0838 -5.2990 1.3241 13 6 4.8707 -6.3497 0.6636 14 6 5.3725 -6.1446 -0.6275 15 6 6.1142 -7.1288 -1.2394 16 6 6.3553 -8.3317 -0.5821 17 8 7.0813 -9.3010 -1.1913 18 6 7.3777 -10.3941 -0.4607 19 1 6.9711 -10.5054 0.5337 20 6 8.2048 -11.3762 -0.9858 21 7 8.7001 -11.2403 -2.1964 22 14 8.6148 -12.8915 0.0266 23 1 7.3631 -13.6175 0.3603 24 1 9.5104 -13.7815 -0.7550 25 1 9.2974 -12.4798 1.2796 26 6 5.8537 -8.5422 0.6990 27 6 5.1163 -7.5612 1.3212 28 6 2.0650 -0.7681 1.2230 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5248 0.8836 32 1 1.1572 1.9461 1.7260 33 1 2.0671 3.1609 1.0056 34 1 1.3182 -1.4683 -1.6036 35 1 2.3807 -0.0807 -2.0105 36 1 4.1571 -0.8818 -0.5860 37 1 3.5101 -2.4192 -1.2414 38 1 4.2385 -3.9696 -0.3059 39 1 3.6931 -5.4608 2.3178 40 1 5.1821 -5.2132 -1.1400 41 1 6.5059 -6.9695 -2.2332 42 1 9.2782 -11.9272 -2.5637 43 1 6.0437 -9.4770 1.2054 44 1 4.7272 -7.7256 2.3152 45 1 2.7167 -0.1220 1.8113 46 1 1.2333 -1.1171 1.8350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280105963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:59 Heat of formation + Delta-G solvation = -82.253100 kcal Electronic energy + Delta-G solvation = -28340.460494 eV Core-core repulsion = 24194.951247 eV Total energy + Delta-G solvation = -4145.509247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77961 -40.86247 -40.28289 -38.57099 -38.07459 -35.03814 -34.73657 -34.04802 -33.59065 -31.96925 -30.53338 -29.93298 -27.93085 -27.33723 -25.28448 -24.06572 -23.80890 -23.51236 -21.70341 -20.33387 -20.22758 -19.51352 -18.82577 -18.63316 -18.00845 -17.82627 -16.81417 -16.49897 -16.44051 -16.19293 -16.00240 -15.83026 -15.61681 -15.30911 -15.08462 -14.72004 -14.61743 -14.37741 -14.15383 -14.07989 -13.74160 -13.56440 -13.38237 -13.31537 -13.23859 -13.01612 -12.67737 -12.57831 -12.27159 -12.22730 -12.14424 -12.03817 -11.87078 -11.21683 -11.11534 -11.06822 -10.87526 -10.67448 -10.58016 -9.89371 -9.80090 -8.68510 -8.51812 -6.18002 -0.27060 0.58593 1.11458 1.36098 1.47405 1.51907 1.53742 1.92128 2.15747 2.30764 2.52860 2.86260 3.17650 3.23593 3.42252 3.48365 3.70486 3.76995 3.93091 4.06243 4.09082 4.20198 4.23762 4.27988 4.31692 4.46630 4.55878 4.61761 4.65482 4.69443 4.82359 4.89277 4.93382 4.95472 5.02886 5.08068 5.17100 5.19442 5.25689 5.32650 5.38048 5.59232 5.63865 5.80313 5.87878 5.97376 6.10115 6.40126 6.44326 6.92351 7.12076 7.29257 7.69339 8.69940 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.029983 B = 0.001667 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.635971 B =16796.545259 C =17379.536309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C 0.531 3.469 4 N -0.835 5.835 5 O -0.579 6.579 6 C -0.116 4.116 7 C 0.094 3.906 8 N -0.618 5.618 9 C 0.571 3.429 10 O -0.590 6.590 11 C -0.248 4.248 12 C 0.022 3.978 13 C -0.172 4.172 14 C -0.037 4.037 15 C -0.207 4.207 16 C 0.131 3.869 17 O -0.219 6.219 18 C -0.418 4.418 19 H 0.106 0.894 20 C -0.018 4.018 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.256 1.256 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.249 4.249 27 C -0.038 4.038 28 C 0.117 3.883 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.416 0.584 33 H 0.409 0.591 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.147 0.853 39 H 0.128 0.872 40 H 0.157 0.843 41 H 0.122 0.878 42 H 0.275 0.725 43 H 0.126 0.874 44 H 0.146 0.854 45 H 0.068 0.932 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.152 24.181 6.781 30.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.095 4.095 3 C 0.315 3.685 4 N -0.399 5.399 5 O -0.459 6.459 6 C -0.154 4.154 7 C -0.028 4.028 8 N -0.351 5.351 9 C 0.365 3.635 10 O -0.473 6.473 11 C -0.268 4.268 12 C 0.002 3.998 13 C -0.173 4.173 14 C -0.055 4.055 15 C -0.226 4.226 16 C 0.078 3.922 17 O -0.124 6.124 18 C -0.493 4.493 19 H 0.123 0.877 20 C -0.217 4.217 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.181 1.181 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.268 4.268 27 C -0.056 4.056 28 C -0.006 4.006 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.248 0.752 33 H 0.241 0.759 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.164 0.836 39 H 0.146 0.854 40 H 0.174 0.826 41 H 0.140 0.860 42 H 0.084 0.916 43 H 0.144 0.856 44 H 0.164 0.836 45 H 0.086 0.914 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.703 23.964 6.386 29.901 hybrid contribution 0.498 -0.584 0.473 0.902 sum -16.205 23.381 6.859 29.263 Atomic orbital electron populations 1.21885 0.89244 1.04033 1.03950 1.21670 0.99328 0.91383 0.97095 1.20438 0.78935 0.87726 0.81373 1.43734 1.53890 1.16230 1.25999 1.90737 1.39083 1.78210 1.37847 1.22830 0.97333 0.98913 0.96358 1.22830 0.97612 1.00502 0.81894 1.48628 1.53372 1.14379 1.18701 1.18127 0.79559 0.81303 0.84520 1.90775 1.54797 1.80883 1.20893 1.22687 1.06770 0.94492 1.02881 1.22181 0.89267 0.90552 0.97778 1.18760 1.06757 0.95642 0.96100 1.21260 0.92925 0.97838 0.93456 1.20414 1.07499 0.92612 1.02115 1.20188 0.90488 0.89225 0.92257 1.83883 1.62154 1.26162 1.40209 1.21867 1.30968 0.95995 1.00504 0.87660 1.26616 0.95022 1.02354 0.97731 1.70148 1.31810 1.36142 1.16886 0.84647 0.79078 0.75126 0.77420 1.18051 1.19627 1.18169 1.21210 1.06833 1.02323 0.96453 1.21319 0.93715 0.91329 0.99234 1.22086 0.96550 0.86904 0.95040 0.91051 0.90805 0.89806 0.75231 0.75879 0.88570 0.88612 0.90850 0.87978 0.83586 0.85442 0.82562 0.85965 0.91598 0.85648 0.83629 0.91351 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 8.12 71.98 0.58 -0.26 16 2 C -0.09 -1.00 0.80 -52.04 -0.04 -1.05 16 3 C 0.53 7.11 6.57 87.66 0.58 7.69 16 4 N -0.83 -4.81 8.70 -173.53 -1.51 -6.32 16 5 O -0.58 -12.83 16.24 -3.04 -0.05 -12.87 16 6 C -0.12 -1.48 6.02 31.90 0.19 -1.28 16 7 C 0.09 1.41 6.91 86.83 0.60 2.01 16 8 N -0.62 -11.91 3.29 -814.04 -2.68 -14.59 16 9 C 0.57 14.58 7.81 86.33 0.67 15.26 16 10 O -0.59 -19.03 16.57 -4.41 -0.07 -19.11 16 11 C -0.25 -5.90 8.91 23.62 0.21 -5.69 16 12 C 0.02 0.59 9.45 23.82 0.23 0.82 16 13 C -0.17 -5.33 5.87 -20.13 -0.12 -5.45 16 14 C -0.04 -1.17 9.40 22.55 0.21 -0.95 16 15 C -0.21 -8.28 9.97 22.35 0.22 -8.06 16 16 C 0.13 6.21 6.66 22.72 0.15 6.36 16 17 O -0.22 -12.68 9.74 -20.21 -0.20 -12.88 16 18 C -0.42 -23.45 9.48 67.94 0.64 -22.80 16 19 H 0.11 5.38 5.18 -2.91 -0.02 5.36 16 20 C -0.02 -1.01 5.49 84.86 0.47 -0.54 16 21 N -0.91 -54.34 13.67 21.62 0.30 -54.04 16 22 Si 1.02 41.38 29.55 68.60 2.03 43.41 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 26 C -0.25 -10.37 9.14 22.34 0.20 -10.17 16 27 C -0.04 -1.28 9.78 22.55 0.22 -1.06 16 28 C 0.12 1.70 6.24 86.53 0.54 2.24 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.19 7.58 -2.39 -0.02 0.17 16 32 H 0.42 0.11 8.26 -92.71 -0.77 -0.65 16 33 H 0.41 1.76 8.93 -92.71 -0.83 0.94 16 34 H 0.10 1.01 7.87 -2.38 -0.02 0.99 16 35 H 0.10 1.42 6.82 -2.39 -0.02 1.40 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.29 6.64 -2.38 -0.02 1.27 16 38 H 0.15 2.81 4.66 -2.91 -0.01 2.79 16 39 H 0.13 3.40 7.52 -2.91 -0.02 3.38 16 40 H 0.16 3.63 6.16 -2.91 -0.02 3.62 16 41 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 42 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.13 5.26 5.62 -2.91 -0.02 5.25 16 44 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 45 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 46 H 0.09 1.30 7.59 -2.39 -0.02 1.28 16 Total: -1.00 -78.62 385.03 2.84 -75.78 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.54 Total: 23.56 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 5.56 Total: -22.94 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -3.89 Total: -74.95 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.32 Total: -44.86 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -78.62 2.84 -75.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280105963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.475 kcal (2) G-P(sol) polarization free energy of solvation -78.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds