Wall clock time and date at job start Wed Apr 1 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29449 * 117.69805 * 2 1 4 4 C 1.50706 * 118.17371 * 0.86060 * 3 2 1 5 5 C 1.50327 * 123.65256 * 181.13712 * 3 2 1 6 6 N 1.47111 * 109.10468 * 348.54261 * 5 3 2 7 7 C 1.34775 * 121.50826 * 223.15598 * 6 5 3 8 8 O 1.21362 * 120.00101 * 182.28961 * 7 6 5 9 9 C 1.49355 * 120.00256 * 2.28297 * 7 6 5 10 10 O 1.21374 * 120.00150 * 353.98791 * 9 7 6 11 11 N 1.34777 * 120.00163 * 173.98362 * 9 7 6 12 12 C 1.39722 * 120.00156 * 184.68579 * 11 9 7 13 13 C 1.39015 * 120.04321 * 324.45959 * 12 11 9 14 14 C 1.38146 * 120.05907 * 179.72002 * 13 12 11 15 15 C 1.38170 * 120.14609 * 0.54755 * 14 13 12 16 16 C 1.38925 * 120.08310 * 359.72403 * 15 14 13 17 17 O 1.35750 * 120.03319 * 179.97438 * 16 15 14 18 18 C 1.34829 * 116.99965 * 185.79412 * 17 16 15 19 19 H 1.08000 * 120.00031 * 5.35536 * 18 17 16 20 20 C 1.38652 * 119.99839 * 185.35831 * 18 17 16 21 21 N 1.31562 * 120.00336 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00088 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46930 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47109 * 119.99984 * 22 20 18 25 25 H 1.48499 * 109.47114 * 239.99884 * 22 20 18 26 26 C 1.38761 * 119.93560 * 359.97438 * 16 15 14 27 27 C 1.47337 * 117.11216 * 43.34519 * 6 5 3 28 28 C 1.49973 * 117.69312 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46644 * 5.18794 * 1 2 3 30 30 H 1.08990 * 109.47322 * 125.19220 * 1 2 3 31 31 H 1.09006 * 109.47200 * 245.19950 * 1 2 3 32 32 H 1.08997 * 109.46840 * 55.38641 * 4 3 2 33 33 H 1.08999 * 109.47023 * 175.38691 * 4 3 2 34 34 H 1.09001 * 109.46849 * 295.37939 * 4 3 2 35 35 H 1.09000 * 109.51975 * 108.65047 * 5 3 2 36 36 H 1.09000 * 109.52095 * 228.83384 * 5 3 2 37 37 H 0.97002 * 119.99665 * 4.69213 * 11 9 7 38 38 H 1.07998 * 119.96723 * 359.96776 * 13 12 11 39 39 H 1.08003 * 119.92073 * 180.25213 * 14 13 12 40 40 H 1.07995 * 119.96403 * 179.74834 * 15 14 13 41 41 H 0.96993 * 120.00279 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.07166 * 180.02562 * 26 16 15 43 43 H 1.09000 * 109.77481 * 178.42640 * 27 6 5 44 44 H 1.08996 * 109.77657 * 57.62736 * 27 6 5 45 45 H 1.08997 * 109.31793 * 281.29596 * 28 2 1 46 46 H 1.09000 * 109.30749 * 40.71627 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1087 1.1462 0.0000 4 6 1.2633 2.3936 0.0200 5 6 3.6036 1.3022 -0.0248 6 7 4.2285 -0.0053 0.2283 7 6 5.2839 -0.1330 1.0567 8 8 5.8043 -1.2181 1.2137 9 6 5.8132 1.0608 1.7815 10 8 5.3652 2.1634 1.5432 11 7 6.7882 0.9138 2.7004 12 6 7.2151 2.0141 3.4482 13 6 7.2634 3.2753 2.8653 14 6 7.6799 4.3644 3.6061 15 6 8.0605 4.2024 4.9244 16 6 8.0200 2.9438 5.5112 17 8 8.3946 2.7857 6.8064 18 6 8.4468 1.5240 7.2789 19 1 8.2811 0.6905 6.6123 20 6 8.7131 1.2965 8.6204 21 7 8.9154 2.3118 9.4323 22 14 8.7847 -0.4515 9.2752 23 1 8.5247 -1.4060 8.1676 24 1 10.1305 -0.7115 9.8463 25 1 7.7563 -0.6267 10.3320 26 6 7.5962 1.8485 4.7722 27 6 3.6533 -1.1702 -0.4667 28 6 2.2040 -1.3279 0.0006 29 1 -0.3633 1.0235 -0.0929 30 1 -0.3633 -0.5922 -0.8397 31 1 -0.3634 -0.4311 0.9329 32 1 0.5876 2.3609 0.8746 33 1 1.9085 3.2685 0.1001 34 1 0.6826 2.4537 -0.9005 35 1 3.9147 1.6758 -1.0004 36 1 3.9094 2.0055 0.7498 37 1 7.1935 0.0441 2.8424 38 1 6.9711 3.4043 1.8337 39 1 7.7127 5.3439 3.1522 40 1 8.3895 5.0552 5.4995 41 1 9.1013 2.1527 10.3708 42 1 7.5634 0.8692 5.2264 43 1 4.2212 -2.0663 -0.2164 44 1 3.6779 -1.0061 -1.5439 45 1 2.1932 -1.7404 1.0095 46 1 1.6811 -2.0097 -0.6701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280428721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:45 Heat of formation + Delta-G solvation = -30.651235 kcal Electronic energy + Delta-G solvation = -29538.158154 eV Core-core repulsion = 25394.886531 eV Total energy + Delta-G solvation = -4143.271622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26387 -39.72877 -38.71199 -38.18233 -36.62515 -35.08132 -34.19306 -32.45621 -32.27845 -29.63007 -29.12084 -28.66777 -27.42324 -25.74706 -25.21407 -23.91928 -23.03294 -21.91217 -21.15618 -20.02826 -18.57646 -18.07375 -17.41731 -17.06583 -16.84594 -16.10595 -15.81591 -15.50839 -15.20404 -15.06838 -14.80919 -14.54407 -14.31987 -14.17949 -13.95549 -13.80600 -13.58808 -13.33830 -13.15047 -13.03802 -12.69908 -12.50819 -12.47853 -12.12000 -11.96450 -11.84541 -11.79239 -11.57651 -11.22886 -11.11200 -10.96832 -10.90403 -10.86696 -10.45689 -9.92859 -9.59751 -9.32090 -9.10083 -8.85927 -8.67330 -7.87010 -7.25768 -6.48682 -4.08506 1.15149 1.86290 2.02354 2.18077 2.33925 3.08944 3.12429 3.13514 3.17747 3.33433 3.93743 4.17659 4.37368 4.48249 4.51872 4.65090 4.82880 5.05801 5.06284 5.09585 5.20846 5.22041 5.28484 5.33480 5.36639 5.44804 5.53986 5.59642 5.62896 5.69207 5.71319 5.73391 5.91244 5.95543 6.03885 6.14504 6.20419 6.24442 6.52413 6.66503 6.77751 6.85854 6.95320 7.05207 7.21452 7.33657 7.37279 7.62869 7.69600 7.94071 7.98483 8.96838 9.65235 10.69125 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.002547 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.640742 B =10991.312311 C =11815.725144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.134 4.134 3 C -0.137 4.137 4 C -0.115 4.115 5 C 0.103 3.897 6 N -0.583 5.583 7 C 0.515 3.485 8 O -0.521 6.521 9 C 0.508 3.492 10 O -0.495 6.495 11 N -0.632 5.632 12 C 0.168 3.832 13 C -0.202 4.202 14 C -0.064 4.064 15 C -0.193 4.193 16 C 0.167 3.833 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.940 3.060 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.276 1.276 26 C -0.248 4.248 27 C 0.108 3.892 28 C -0.095 4.095 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.155 0.845 37 H 0.419 0.581 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.270 0.730 42 H 0.132 0.868 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.571 -4.286 -20.396 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.134 4.134 3 C -0.138 4.138 4 C -0.172 4.172 5 C -0.017 4.017 6 N -0.316 5.316 7 C 0.298 3.702 8 O -0.397 6.397 9 C 0.291 3.709 10 O -0.372 6.372 11 N -0.276 5.276 12 C 0.076 3.924 13 C -0.223 4.223 14 C -0.083 4.083 15 C -0.213 4.213 16 C 0.112 3.888 17 O -0.077 6.077 18 C -0.469 4.469 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.270 4.270 27 C -0.014 4.014 28 C -0.132 4.132 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.171 0.829 37 H 0.257 0.743 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.150 0.850 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.498 -3.939 -20.048 24.488 hybrid contribution 0.033 -1.491 0.360 1.535 sum -13.465 -5.431 -19.688 24.463 Atomic orbital electron populations 1.21092 0.92415 1.03059 1.01851 1.20507 0.95887 0.94138 1.02894 1.21056 0.95264 0.95291 1.02203 1.20857 0.99090 0.95355 1.01873 1.21813 0.89170 0.85195 1.05541 1.48000 1.29975 1.10256 1.43412 1.19954 0.81107 0.88951 0.80199 1.90768 1.58029 1.27537 1.63326 1.20056 0.80581 0.89212 0.81090 1.90453 1.56712 1.26491 1.63509 1.43131 1.35444 1.13078 1.35987 1.17418 0.98540 0.86453 0.89998 1.20661 1.09526 0.91404 1.00715 1.20547 0.97025 0.97669 0.93087 1.20310 1.09714 0.95674 0.95610 1.19073 0.91372 0.92612 0.85742 1.84023 1.73609 1.30466 1.19582 1.21337 1.50628 0.81141 0.93791 0.89105 1.25286 0.96460 0.99830 0.94838 1.70042 1.43931 1.30525 1.05028 0.85661 0.78339 0.80317 0.79217 1.19064 1.20082 1.20113 1.20864 1.12550 1.00852 0.92701 1.21807 0.93620 0.89507 0.96465 1.20665 0.94435 0.95479 1.02662 0.91051 0.91933 0.91831 0.91329 0.91581 0.91469 0.90249 0.82871 0.74344 0.85756 0.86392 0.86210 0.91996 0.85001 0.88332 0.90445 0.90446 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 9.61 36.01 0.35 -0.54 16 2 C -0.13 -1.17 5.86 -100.99 -0.59 -1.77 16 3 C -0.14 -1.29 5.92 -100.81 -0.60 -1.89 16 4 C -0.11 -0.88 8.35 36.01 0.30 -0.58 16 5 C 0.10 1.10 5.84 -5.04 -0.03 1.07 16 6 N -0.58 -6.74 2.97 -174.59 -0.52 -7.26 16 7 C 0.52 7.15 7.79 -11.63 -0.09 7.06 16 8 O -0.52 -8.04 15.98 5.49 0.09 -7.95 16 9 C 0.51 7.68 7.65 -11.63 -0.09 7.59 16 10 O -0.50 -7.81 10.55 5.48 0.06 -7.75 16 11 N -0.63 -10.06 5.32 -10.31 -0.05 -10.11 16 12 C 0.17 3.15 6.28 -83.78 -0.53 2.62 16 13 C -0.20 -3.66 8.69 -39.33 -0.34 -4.00 16 14 C -0.06 -1.15 10.03 -39.64 -0.40 -1.54 16 15 C -0.19 -3.99 9.99 -39.35 -0.39 -4.39 16 16 C 0.17 3.94 6.64 -39.13 -0.26 3.68 16 17 O -0.17 -4.85 9.76 0.05 0.00 -4.85 16 18 C -0.39 -10.78 9.44 30.89 0.29 -10.49 16 19 H 0.09 2.31 5.29 -52.49 -0.28 2.03 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 22 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.25 -5.30 9.05 -39.19 -0.35 -5.65 16 27 C 0.11 0.99 6.50 -3.54 -0.02 0.97 16 28 C -0.09 -0.77 5.97 -28.18 -0.17 -0.94 16 29 H 0.07 0.45 5.21 -51.93 -0.27 0.18 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.52 7.39 -51.93 -0.38 0.13 16 33 H 0.07 0.51 7.94 -51.93 -0.41 0.10 16 34 H 0.07 0.42 7.63 -51.93 -0.40 0.03 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.15 1.92 4.32 -54.96 -0.24 1.68 16 37 H 0.42 6.04 8.30 -40.82 -0.34 5.70 16 38 H 0.12 2.12 6.25 -52.49 -0.33 1.79 16 39 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 43 H 0.10 0.95 7.07 -51.93 -0.37 0.58 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -31.46 376.61 -7.87 -39.33 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.83 Total: 9.58 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -3.02 Total: -7.79 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.19 Total: -41.55 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.15 Total: -20.55 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.46 -7.87 -39.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280428721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.677 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds