Wall clock time and date at job start Wed Apr 1 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34456 * 124.92414 * 2 1 4 4 C 1.34804 * 110.88659 * 180.02562 * 3 2 1 5 5 C 1.38945 * 133.48848 * 179.97438 * 4 3 2 6 6 C 1.37850 * 119.81672 * 180.02562 * 5 4 3 7 7 C 1.38740 * 120.68246 * 359.97438 * 6 5 4 8 8 C 1.36735 * 120.42039 * 0.03053 * 7 6 5 9 9 C 1.39401 * 119.71841 * 359.66936 * 8 7 6 10 10 C 1.33995 * 124.92270 * 180.02562 * 2 1 3 11 11 C 1.50700 * 126.90831 * 359.95267 * 10 2 1 12 12 N 1.46498 * 109.46769 * 90.02567 * 11 10 2 13 13 C 1.34777 * 119.99828 * 179.72341 * 12 11 10 14 14 O 1.21353 * 120.00267 * 0.28147 * 13 12 11 15 15 C 1.49454 * 120.00301 * 180.27890 * 13 12 11 16 16 O 1.21353 * 119.99427 * 359.97438 * 15 13 12 17 17 N 1.34777 * 120.00297 * 180.02562 * 15 13 12 18 18 C 1.46495 * 119.99663 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.46738 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.46988 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46979 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00149 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99762 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00097 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99835 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46973 * 89.99891 * 25 23 21 27 27 H 1.48493 * 109.47274 * 209.99829 * 25 23 21 28 28 H 1.48500 * 109.47089 * 330.00069 * 25 23 21 29 29 H 1.09000 * 109.46915 * 269.97799 * 1 2 3 30 30 H 1.08998 * 109.47115 * 29.97620 * 1 2 3 31 31 H 1.08995 * 109.47229 * 149.97820 * 1 2 3 32 32 H 1.07997 * 120.09222 * 359.97438 * 5 4 3 33 33 H 1.07994 * 119.65716 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.79165 * 180.02562 * 7 6 5 35 35 H 1.08008 * 120.13900 * 179.97438 * 8 7 6 36 36 H 1.09004 * 109.47210 * 330.02924 * 11 10 2 37 37 H 1.08994 * 109.47121 * 210.02894 * 11 10 2 38 38 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 39 39 H 0.97000 * 119.99736 * 359.97438 * 17 15 13 40 40 H 1.09007 * 109.47376 * 299.99203 * 18 17 15 41 41 H 1.08997 * 109.47774 * 59.99894 * 18 17 15 42 42 H 1.09006 * 109.47053 * 299.99454 * 19 18 17 43 43 H 1.08997 * 109.47419 * 59.99839 * 19 18 17 44 44 H 1.09007 * 109.47300 * 299.99413 * 20 19 18 45 45 H 1.08997 * 109.47600 * 59.99950 * 20 19 18 46 46 H 0.97000 * 119.99613 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1024 0.0000 4 6 3.5845 0.7754 -0.0006 5 6 4.7567 1.5215 -0.0013 6 6 5.9771 0.8805 -0.0023 7 6 6.0491 -0.5050 -0.0020 8 6 4.9075 -1.2576 -0.0015 9 6 3.6642 -0.6272 0.0059 10 6 2.2741 -1.0987 -0.0005 11 6 1.8041 -2.5305 -0.0001 12 7 1.6516 -2.9947 -1.3812 13 6 1.2437 -4.2554 -1.6273 14 8 0.9979 -5.0046 -0.7048 15 6 1.0940 -4.7310 -3.0362 16 8 1.3392 -3.9817 -3.9587 17 7 0.6856 -5.9916 -3.2822 18 6 0.5394 -6.4578 -4.6633 19 6 0.0675 -7.9132 -4.6630 20 6 -0.0858 -8.3999 -6.1054 21 6 -0.5512 -9.8333 -6.1051 22 1 -0.7202 -10.3459 -5.1697 23 6 -0.7601 -10.4905 -7.2990 24 7 -0.5537 -9.8664 -8.4381 25 14 -1.3362 -12.2674 -7.2987 26 1 -2.8207 -12.3064 -7.3032 27 1 -0.8193 -12.9557 -8.5087 28 1 -0.8268 -12.9527 -6.0837 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5141 32 1 4.7118 2.6005 -0.0018 33 1 6.8866 1.4629 -0.0032 34 1 7.0129 -0.9923 -0.0024 35 1 4.9688 -2.3360 -0.0017 36 1 0.8453 -2.5982 0.5139 37 1 2.5365 -3.1531 0.5136 38 1 1.8483 -2.3960 -2.1187 39 1 0.4892 -6.5904 -2.5448 40 1 -0.1933 -5.8381 -5.1804 41 1 1.4997 -6.3877 -5.1741 42 1 0.8005 -8.5327 -4.1461 43 1 -0.8927 -7.9838 -4.1521 44 1 -0.8190 -7.7804 -6.6220 45 1 0.8743 -8.3294 -6.6167 46 1 -0.7010 -10.3287 -9.2780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286721663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:28 Heat of formation + Delta-G solvation = -59.028374 kcal Electronic energy + Delta-G solvation = -27974.371024 eV Core-core repulsion = 23829.868877 eV Total energy + Delta-G solvation = -4144.502147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.00878 -40.59863 -38.56684 -38.34660 -36.18565 -35.49202 -33.51836 -33.15727 -31.69428 -31.25271 -30.90416 -28.58592 -27.27204 -26.40295 -24.22252 -23.41013 -22.46550 -22.12016 -20.78851 -20.70651 -20.08747 -18.53530 -17.52297 -17.23657 -17.02765 -16.65642 -16.33399 -16.09097 -15.83817 -15.46805 -15.04329 -14.97511 -14.49065 -14.44144 -14.17280 -14.07857 -13.74136 -13.65320 -13.50910 -13.24428 -12.78561 -12.63972 -12.54076 -12.31697 -12.10460 -11.90076 -11.80321 -11.73301 -11.33730 -10.91845 -10.77033 -10.61384 -10.50810 -9.90970 -9.80200 -9.53685 -9.39503 -9.14188 -9.06053 -8.99002 -8.56122 -8.38490 -6.03254 -4.06278 0.42888 0.91589 1.39856 1.60487 2.18116 2.49353 3.20730 3.28307 3.30730 3.37166 3.40263 3.72862 3.87181 4.04055 4.32553 4.43129 4.48920 4.53045 4.54999 4.69907 4.85850 4.92697 4.93842 5.10763 5.16248 5.19390 5.28678 5.32743 5.51433 5.58554 5.68355 5.76863 5.81943 5.89895 5.95263 6.03291 6.07261 6.20642 6.26066 6.53278 6.68083 6.70181 6.90076 6.94444 7.38394 7.61076 7.69326 7.72662 7.95037 8.03922 8.36289 9.00222 9.58102 11.07976 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.001580 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.140814 B =17722.227079 C =18156.721042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.070 3.930 3 O -0.189 6.189 4 C 0.049 3.951 5 C -0.105 4.105 6 C -0.095 4.095 7 C -0.131 4.131 8 C -0.071 4.071 9 C -0.113 4.113 10 C -0.208 4.208 11 C 0.195 3.805 12 N -0.701 5.701 13 C 0.509 3.491 14 O -0.520 6.520 15 C 0.500 3.500 16 O -0.526 6.526 17 N -0.691 5.691 18 C 0.113 3.887 19 C -0.123 4.123 20 C 0.024 3.976 21 C -0.523 4.523 22 H 0.056 0.944 23 C 0.057 3.943 24 N -0.894 5.894 25 Si 0.894 3.106 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.414 0.586 39 H 0.411 0.589 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.199 25.051 21.317 34.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.021 3.979 3 O -0.090 6.090 4 C 0.002 3.998 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.149 4.149 8 C -0.089 4.089 9 C -0.114 4.114 10 C -0.210 4.210 11 C 0.073 3.927 12 N -0.355 5.355 13 C 0.290 3.710 14 O -0.395 6.395 15 C 0.279 3.721 16 O -0.402 6.402 17 N -0.343 5.343 18 C -0.008 4.008 19 C -0.161 4.161 20 C -0.014 4.014 21 C -0.561 4.561 22 H 0.074 0.926 23 C -0.145 4.145 24 N -0.533 5.533 25 Si 0.721 3.279 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.251 0.749 39 H 0.247 0.753 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.090 25.269 21.120 34.165 hybrid contribution -0.174 -1.021 -0.118 1.042 sum 8.917 24.248 21.002 33.295 Atomic orbital electron populations 1.20582 0.84267 1.05126 1.04462 1.22300 0.94015 0.83226 0.98408 1.83982 1.15194 1.33708 1.76143 1.19567 0.83092 0.93417 1.03687 1.19962 0.88033 0.99843 1.04508 1.20961 0.96550 0.94700 0.99055 1.20829 0.98520 0.93879 1.01702 1.20335 0.90095 1.00296 0.98131 1.19716 0.93506 0.92855 1.05334 1.20673 0.91240 0.95117 1.13929 1.19530 1.01820 0.88589 0.82798 1.45900 1.67070 1.13137 1.09421 1.20371 0.78121 0.82509 0.90028 1.90768 1.48524 1.54512 1.45738 1.19990 0.79582 0.83590 0.88895 1.90770 1.49334 1.54715 1.45423 1.46067 1.64812 1.12160 1.11228 1.21849 1.02009 0.97257 0.79731 1.21929 1.00266 0.91299 1.02573 1.19036 0.97553 0.96043 0.88729 1.21203 1.45317 0.97229 0.92383 0.92560 1.25029 0.95542 0.98234 0.95650 1.69964 1.49057 1.36966 0.97285 0.86569 0.78910 0.84846 0.77526 1.20651 1.21212 1.19871 0.88989 0.89589 0.88535 0.84984 0.84657 0.85151 0.85413 0.89702 0.89826 0.74932 0.75296 0.91075 0.91097 0.92417 0.92416 0.96193 0.96185 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.00 36.00 0.36 -0.07 16 2 C 0.07 0.56 7.23 -35.80 -0.26 0.30 16 3 O -0.19 -1.80 10.58 3.90 0.04 -1.75 16 4 C 0.05 0.47 7.42 -38.47 -0.29 0.18 16 5 C -0.11 -0.78 10.07 -39.46 -0.40 -1.18 16 6 C -0.09 -0.59 10.01 -39.54 -0.40 -0.99 16 7 C -0.13 -0.90 9.98 -39.94 -0.40 -1.29 16 8 C -0.07 -0.58 10.05 -39.69 -0.40 -0.98 16 9 C -0.11 -1.07 6.38 -105.16 -0.67 -1.74 16 10 C -0.21 -1.80 5.72 -102.66 -0.59 -2.38 16 11 C 0.20 1.66 5.76 -5.19 -0.03 1.63 16 12 N -0.70 -7.10 5.54 -61.91 -0.34 -7.44 16 13 C 0.51 6.47 7.89 -11.58 -0.09 6.38 16 14 O -0.52 -7.45 16.48 5.49 0.09 -7.36 16 15 C 0.50 7.36 7.89 -11.58 -0.09 7.27 16 16 O -0.53 -8.90 16.48 5.49 0.09 -8.81 16 17 N -0.69 -10.21 5.55 -60.73 -0.34 -10.55 16 18 C 0.11 1.93 5.67 -4.04 -0.02 1.91 16 19 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 20 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 21 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 22 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 25 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.45 7.68 -51.93 -0.40 0.06 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.08 0.65 7.72 -51.93 -0.40 0.25 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.41 4.14 7.94 -40.82 -0.32 3.82 16 39 H 0.41 5.52 7.94 -40.82 -0.32 5.19 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -33.43 400.49 -9.15 -42.58 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.49 Total: 3.08 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -3.96 Total: -6.33 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.06 Total: -43.86 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.22 Total: -17.93 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.43 -9.15 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286721663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.444 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds