Wall clock time and date at job start Wed Apr 1 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34456 * 124.92414 * 2 1 4 4 C 1.34804 * 110.88659 * 180.02562 * 3 2 1 5 5 C 1.38945 * 133.48848 * 179.97438 * 4 3 2 6 6 C 1.37850 * 119.81672 * 180.02562 * 5 4 3 7 7 C 1.38740 * 120.68246 * 359.97438 * 6 5 4 8 8 C 1.36735 * 120.42039 * 0.03053 * 7 6 5 9 9 C 1.39401 * 119.71841 * 359.66936 * 8 7 6 10 10 C 1.33995 * 124.92270 * 180.02562 * 2 1 3 11 11 C 1.50700 * 126.90831 * 359.95267 * 10 2 1 12 12 N 1.46498 * 109.46769 * 90.02567 * 11 10 2 13 13 C 1.34777 * 119.99828 * 179.72341 * 12 11 10 14 14 O 1.21353 * 120.00267 * 0.28147 * 13 12 11 15 15 C 1.49454 * 120.00301 * 180.27890 * 13 12 11 16 16 O 1.21353 * 119.99427 * 359.97438 * 15 13 12 17 17 N 1.34777 * 120.00297 * 180.02562 * 15 13 12 18 18 C 1.46495 * 119.99663 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.46738 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.46988 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46979 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00149 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99762 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00097 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99835 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46973 * 89.99891 * 25 23 21 27 27 H 1.48493 * 109.47274 * 209.99829 * 25 23 21 28 28 H 1.48500 * 109.47089 * 330.00069 * 25 23 21 29 29 H 1.09000 * 109.46915 * 269.97799 * 1 2 3 30 30 H 1.08998 * 109.47115 * 29.97620 * 1 2 3 31 31 H 1.08995 * 109.47229 * 149.97820 * 1 2 3 32 32 H 1.07997 * 120.09222 * 359.97438 * 5 4 3 33 33 H 1.07994 * 119.65716 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.79165 * 180.02562 * 7 6 5 35 35 H 1.08008 * 120.13900 * 179.97438 * 8 7 6 36 36 H 1.09004 * 109.47210 * 330.02924 * 11 10 2 37 37 H 1.08994 * 109.47121 * 210.02894 * 11 10 2 38 38 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 39 39 H 0.97000 * 119.99736 * 359.97438 * 17 15 13 40 40 H 1.09007 * 109.47376 * 299.99203 * 18 17 15 41 41 H 1.08997 * 109.47774 * 59.99894 * 18 17 15 42 42 H 1.09006 * 109.47053 * 299.99454 * 19 18 17 43 43 H 1.08997 * 109.47419 * 59.99839 * 19 18 17 44 44 H 1.09007 * 109.47300 * 299.99413 * 20 19 18 45 45 H 1.08997 * 109.47600 * 59.99950 * 20 19 18 46 46 H 0.97000 * 119.99613 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1024 0.0000 4 6 3.5845 0.7754 -0.0006 5 6 4.7567 1.5215 -0.0013 6 6 5.9771 0.8805 -0.0023 7 6 6.0491 -0.5050 -0.0020 8 6 4.9075 -1.2576 -0.0015 9 6 3.6642 -0.6272 0.0059 10 6 2.2741 -1.0987 -0.0005 11 6 1.8041 -2.5305 -0.0001 12 7 1.6516 -2.9947 -1.3812 13 6 1.2437 -4.2554 -1.6273 14 8 0.9979 -5.0046 -0.7048 15 6 1.0940 -4.7310 -3.0362 16 8 1.3392 -3.9817 -3.9587 17 7 0.6856 -5.9916 -3.2822 18 6 0.5394 -6.4578 -4.6633 19 6 0.0675 -7.9132 -4.6630 20 6 -0.0858 -8.3999 -6.1054 21 6 -0.5512 -9.8333 -6.1051 22 1 -0.7202 -10.3459 -5.1697 23 6 -0.7601 -10.4905 -7.2990 24 7 -0.5537 -9.8664 -8.4381 25 14 -1.3362 -12.2674 -7.2987 26 1 -2.8207 -12.3064 -7.3032 27 1 -0.8193 -12.9557 -8.5087 28 1 -0.8268 -12.9527 -6.0837 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5141 32 1 4.7118 2.6005 -0.0018 33 1 6.8866 1.4629 -0.0032 34 1 7.0129 -0.9923 -0.0024 35 1 4.9688 -2.3360 -0.0017 36 1 0.8453 -2.5982 0.5139 37 1 2.5365 -3.1531 0.5136 38 1 1.8483 -2.3960 -2.1187 39 1 0.4892 -6.5904 -2.5448 40 1 -0.1933 -5.8381 -5.1804 41 1 1.4997 -6.3877 -5.1741 42 1 0.8005 -8.5327 -4.1461 43 1 -0.8927 -7.9838 -4.1521 44 1 -0.8190 -7.7804 -6.6220 45 1 0.8743 -8.3294 -6.6167 46 1 -0.7010 -10.3287 -9.2780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286721663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:27 Heat of formation + Delta-G solvation = -80.713909 kcal Electronic energy + Delta-G solvation = -27975.311380 eV Core-core repulsion = 23829.868877 eV Total energy + Delta-G solvation = -4145.442503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.61384 -41.71361 -39.71141 -38.88870 -37.29717 -36.69472 -35.23759 -34.04481 -33.03555 -32.19406 -31.46959 -29.44145 -28.72366 -27.24145 -25.68821 -24.00940 -23.88363 -22.66933 -22.36583 -21.50157 -21.14602 -19.62021 -18.53343 -18.10264 -18.00863 -17.84713 -17.38338 -17.21591 -16.66085 -16.39725 -16.35703 -16.22021 -16.03263 -15.30528 -15.02931 -14.87645 -14.70972 -14.40635 -14.26739 -14.03804 -13.83865 -13.77369 -13.54592 -13.38123 -13.18686 -13.08603 -12.91201 -12.75582 -12.62658 -12.54508 -12.39942 -11.88632 -11.69427 -11.56491 -11.24446 -11.13579 -10.68816 -10.54289 -10.42029 -10.28720 -9.64598 -9.14270 -8.18994 -6.29880 -0.13566 0.28779 0.33085 0.90847 1.42509 1.43485 1.49920 1.54769 1.63200 2.08738 2.42232 2.63199 2.77431 3.14964 3.32480 3.39958 3.43236 3.72892 3.95101 4.08766 4.09024 4.18656 4.25490 4.37987 4.38868 4.48535 4.53025 4.56312 4.61094 4.69819 4.83825 4.86807 4.92063 5.00029 5.02299 5.15596 5.22518 5.23138 5.30108 5.39654 5.49532 5.52198 5.67913 5.71293 5.84967 5.86048 6.11503 6.23023 6.29594 6.65733 6.87103 6.88794 7.39498 8.92827 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.001580 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.140814 B =17722.227079 C =18156.721042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.070 3.930 3 O -0.201 6.201 4 C 0.022 3.978 5 C -0.113 4.113 6 C -0.093 4.093 7 C -0.132 4.132 8 C -0.090 4.090 9 C -0.133 4.133 10 C -0.222 4.222 11 C 0.200 3.800 12 N -0.686 5.686 13 C 0.518 3.482 14 O -0.536 6.536 15 C 0.501 3.499 16 O -0.549 6.549 17 N -0.685 5.685 18 C 0.127 3.873 19 C -0.106 4.106 20 C 0.024 3.976 21 C -0.542 4.542 22 H 0.065 0.935 23 C -0.002 4.002 24 N -0.933 5.933 25 Si 0.966 3.034 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.262 1.262 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.416 0.584 39 H 0.420 0.580 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.068 0.932 44 H -0.004 1.004 45 H -0.004 1.004 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 25.159 22.961 35.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.021 3.979 3 O -0.103 6.103 4 C -0.024 4.024 5 C -0.131 4.131 6 C -0.110 4.110 7 C -0.149 4.149 8 C -0.108 4.108 9 C -0.134 4.134 10 C -0.223 4.223 11 C 0.078 3.922 12 N -0.339 5.339 13 C 0.298 3.702 14 O -0.413 6.413 15 C 0.282 3.718 16 O -0.428 6.428 17 N -0.337 5.337 18 C 0.004 3.996 19 C -0.144 4.144 20 C -0.014 4.014 21 C -0.580 4.580 22 H 0.083 0.917 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.790 3.210 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.186 1.186 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.167 0.833 33 H 0.183 0.817 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.253 0.747 39 H 0.258 0.742 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.015 0.985 45 H 0.014 0.986 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.324 25.398 22.802 35.382 hybrid contribution -0.173 -0.947 -0.622 1.146 sum 9.151 24.451 22.180 34.257 Atomic orbital electron populations 1.20734 0.82185 1.05695 1.05764 1.22848 0.95156 0.82781 0.97109 1.83969 1.15515 1.34397 1.76408 1.19975 0.83539 0.93935 1.04986 1.20342 0.87854 1.00872 1.04066 1.21363 0.97261 0.94778 0.97647 1.21184 0.99000 0.94351 1.00414 1.20540 0.90396 1.00758 0.99130 1.19985 0.94213 0.93257 1.05943 1.20672 0.91256 0.95175 1.15241 1.19599 1.02477 0.88555 0.81571 1.45904 1.65464 1.12099 1.10405 1.19877 0.78541 0.83129 0.88611 1.90770 1.49798 1.55080 1.45621 1.20333 0.78677 0.83098 0.89699 1.90761 1.50279 1.55288 1.46437 1.45869 1.64841 1.12580 1.10438 1.21479 1.01322 0.95812 0.80997 1.21641 1.01278 0.92616 0.98826 1.18943 0.95384 0.95111 0.91932 1.21685 1.45021 0.98516 0.92822 0.91725 1.25985 0.95662 1.03020 0.95286 1.70100 1.50260 1.38963 0.97986 0.85438 0.78577 0.79129 0.77839 1.19847 1.20996 1.18645 0.87215 0.88710 0.88200 0.83284 0.81658 0.82977 0.85126 0.88367 0.89919 0.74747 0.74243 0.91690 0.91844 0.91447 0.91339 0.98513 0.98569 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 10.00 71.24 0.71 -0.03 16 2 C 0.07 1.09 7.23 24.72 0.18 1.27 16 3 O -0.20 -3.80 10.58 -8.94 -0.09 -3.89 16 4 C 0.02 0.41 7.42 22.99 0.17 0.58 16 5 C -0.11 -1.57 10.07 22.35 0.23 -1.35 16 6 C -0.09 -1.00 10.01 22.30 0.22 -0.78 16 7 C -0.13 -1.62 9.98 22.04 0.22 -1.40 16 8 C -0.09 -1.46 10.05 22.20 0.22 -1.24 16 9 C -0.13 -2.50 6.38 -20.21 -0.13 -2.63 16 10 C -0.22 -3.75 5.72 -18.59 -0.11 -3.86 16 11 C 0.20 3.23 5.76 85.63 0.49 3.72 16 12 N -0.69 -13.32 5.54 -468.14 -2.59 -15.92 16 13 C 0.52 12.65 7.89 87.27 0.69 13.34 16 14 O -0.54 -14.65 16.48 -3.26 -0.05 -14.70 16 15 C 0.50 14.41 7.89 87.27 0.69 15.10 16 16 O -0.55 -18.45 16.48 -3.26 -0.05 -18.51 16 17 N -0.68 -19.63 5.55 -464.40 -2.58 -22.21 16 18 C 0.13 4.30 5.67 86.38 0.49 4.79 16 19 C -0.11 -4.03 5.27 30.60 0.16 -3.86 16 20 C 0.02 1.23 4.97 29.85 0.15 1.37 16 21 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 22 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 23 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 24 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 25 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 29 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.79 7.68 -2.39 -0.02 0.77 16 32 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 33 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 34 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.10 1.35 7.72 -2.38 -0.02 1.33 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.42 8.09 7.94 -92.71 -0.74 7.36 16 39 H 0.42 10.67 7.94 -92.71 -0.74 9.93 16 40 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 45 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -72.05 400.49 1.57 -70.48 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.45 Total: 19.59 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 5.08 Total: -4.50 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -4.89 Total: -94.24 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.20 Total: -37.10 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -72.05 1.57 -70.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286721663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.234 kcal (2) G-P(sol) polarization free energy of solvation -72.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds