Wall clock time and date at job start Wed Apr 1 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48500 * 109.46997 * 269.99860 * 3 2 1 5 5 H 1.48493 * 109.47212 * 29.99607 * 3 2 1 6 6 H 1.48499 * 109.46788 * 150.00232 * 3 2 1 7 7 C 1.37878 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99698 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97810 * 125.00342 * 10 9 7 12 12 C 1.35242 * 107.86171 * 180.02562 * 11 10 9 13 13 C 1.40398 * 107.86882 * 359.97438 * 12 11 10 14 14 N 1.40195 * 125.97579 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99794 * 359.97438 * 14 13 12 16 16 O 1.21588 * 120.00151 * 359.72912 * 15 14 13 17 17 N 1.34784 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.46499 * 119.99893 * 179.72905 * 17 15 14 19 19 H 1.08992 * 110.01896 * 34.93875 * 18 17 15 20 20 C 1.53875 * 110.02778 * 273.54424 * 18 17 15 21 21 C 1.54273 * 106.59960 * 240.71495 * 20 18 17 22 22 C 1.54895 * 104.19015 * 23.61464 * 21 20 18 23 23 C 1.54265 * 110.03012 * 156.38237 * 18 17 15 24 24 H 1.08999 * 110.48582 * 214.35179 * 23 18 17 25 25 O 1.42900 * 110.48576 * 336.99268 * 23 18 17 26 26 C 1.42908 * 113.99775 * 210.00221 * 25 23 18 27 27 F 1.39894 * 109.46947 * 299.99970 * 26 25 23 28 28 F 1.39899 * 109.46876 * 59.99957 * 26 25 23 29 29 N 1.31213 * 108.05485 * 0.24782 * 13 12 11 30 30 H 0.96996 * 119.99774 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47277 * 60.00015 * 9 7 2 32 32 H 1.09003 * 109.46984 * 300.00346 * 9 7 2 33 33 H 1.08003 * 126.06919 * 359.95971 * 11 10 9 34 34 H 1.08004 * 126.06992 * 179.97438 * 12 11 10 35 35 H 0.97004 * 120.00188 * 180.02562 * 14 13 12 36 36 H 0.97005 * 119.99846 * 359.72693 * 17 15 14 37 37 H 1.09001 * 110.03747 * 359.97438 * 20 18 17 38 38 H 1.08998 * 110.03302 * 121.43659 * 20 18 17 39 39 H 1.08994 * 110.48497 * 142.28726 * 21 20 18 40 40 H 1.08993 * 110.48595 * 264.93963 * 21 20 18 41 41 H 1.08997 * 110.75775 * 80.37445 * 22 21 20 42 42 H 1.09004 * 110.75290 * 203.55719 * 22 21 20 43 43 H 1.09003 * 109.46840 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.2414 -4.6220 0.8969 12 6 3.2606 -5.4421 0.5539 13 6 3.8695 -4.9148 -0.5960 14 7 4.9668 -5.4654 -1.2730 15 6 5.5321 -6.6042 -0.8259 16 8 5.0935 -7.1514 0.1674 17 7 6.5866 -7.1339 -1.4770 18 6 7.2048 -8.3686 -0.9876 19 1 6.4437 -9.0257 -0.5670 20 6 8.2653 -8.0406 0.0780 21 6 9.6110 -8.5665 -0.4630 22 6 9.4117 -8.6111 -1.9984 23 6 7.9430 -9.0823 -2.1389 24 1 7.8766 -10.1640 -2.0221 25 8 7.4075 -8.6806 -3.4014 26 6 7.4945 -9.6839 -4.4154 27 9 8.8361 -10.0206 -4.6243 28 9 6.7863 -10.8199 -4.0092 29 7 3.2359 -3.8133 -0.9230 30 1 -0.4849 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8897 32 1 0.6240 -2.5566 0.8903 33 1 1.5768 -4.7512 1.7384 34 1 3.5541 -6.3428 1.0725 35 1 5.3196 -5.0263 -2.0627 36 1 6.9363 -6.6976 -2.2697 37 1 8.3204 -6.9627 0.2306 38 1 8.0194 -8.5392 1.0155 39 1 10.4197 -7.8836 -0.2029 40 1 9.8139 -9.5649 -0.0755 41 1 9.5430 -7.6205 -2.4339 42 1 10.0953 -9.3263 -2.4560 43 1 7.0676 -9.3013 -5.3425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337586658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:14 Heat of formation + Delta-G solvation = -125.724289 kcal Electronic energy + Delta-G solvation = -29782.013422 eV Core-core repulsion = 25112.682343 eV Total energy + Delta-G solvation = -4669.331078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.01740 -48.13073 -42.22508 -41.20891 -39.76636 -37.24289 -36.13767 -35.28910 -34.57868 -32.61557 -30.91951 -29.32801 -29.03660 -28.20976 -26.06220 -25.04773 -23.38571 -22.08980 -21.85852 -21.31354 -21.21359 -19.70759 -19.18449 -18.71737 -18.62819 -18.57530 -18.07979 -17.18985 -16.76061 -16.55926 -16.39632 -16.05143 -15.64543 -15.48546 -15.36475 -15.14090 -14.88182 -14.50345 -14.46678 -14.27457 -14.07093 -13.92108 -13.78017 -13.66750 -13.49128 -12.99482 -12.92515 -12.72843 -12.44754 -12.27791 -12.24827 -12.08469 -12.02113 -11.63028 -11.54553 -11.37817 -11.28981 -11.09335 -10.71148 -10.18688 -9.70357 -9.03308 -8.31632 -6.45795 1.08086 1.14185 1.38953 1.39700 1.51269 1.72312 1.90917 2.19185 2.37396 2.43036 2.75575 2.99775 3.18783 3.31383 3.48684 3.77351 3.91351 3.94914 3.99332 4.12057 4.29829 4.32360 4.39521 4.46981 4.64958 4.78134 4.83926 4.92052 4.96935 4.99208 5.03554 5.07707 5.17137 5.19338 5.26742 5.47736 5.57941 5.67401 5.78131 5.90373 5.99786 6.31213 6.65275 6.78701 7.17115 7.24070 7.45774 8.75812 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.002039 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.084068 B =13731.104422 C =13793.195010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.346 5.346 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.285 3.715 14 N -0.636 5.636 15 C 0.714 3.286 16 O -0.600 6.600 17 N -0.708 5.708 18 C 0.166 3.834 19 H 0.083 0.917 20 C -0.134 4.134 21 C -0.115 4.115 22 C -0.136 4.136 23 C 0.069 3.931 24 H 0.097 0.903 25 O -0.381 6.381 26 C 0.401 3.599 27 F -0.214 7.214 28 F -0.221 7.221 29 N -0.347 5.347 30 H 0.272 0.728 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.200 0.800 34 H 0.167 0.833 35 H 0.420 0.580 36 H 0.414 0.586 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.439 -21.288 -7.124 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.128 5.128 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.030 3.970 14 N -0.288 5.288 15 C 0.413 3.587 16 O -0.478 6.478 17 N -0.364 5.364 18 C 0.061 3.939 19 H 0.101 0.899 20 C -0.173 4.173 21 C -0.153 4.153 22 C -0.173 4.173 23 C 0.011 3.989 24 H 0.115 0.885 25 O -0.302 6.302 26 C 0.310 3.690 27 F -0.196 7.196 28 F -0.203 7.203 29 N -0.179 5.179 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.217 0.783 34 H 0.184 0.816 35 H 0.257 0.743 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 19.690 -20.498 -7.084 29.292 hybrid contribution 0.376 0.369 -0.108 0.538 sum 20.066 -20.130 -7.192 29.318 Atomic orbital electron populations 1.69998 1.07210 1.28744 1.50029 1.25749 0.95853 1.02735 0.93930 0.85341 0.78357 0.78121 0.78556 1.19765 1.19712 1.19737 1.21401 0.93375 0.90973 1.52699 0.92956 1.19327 0.85679 0.81522 0.98068 1.48818 1.23747 1.20379 1.19844 1.23150 1.00482 0.88959 0.96691 1.21676 1.02091 1.06655 1.01893 1.19082 0.90866 0.92937 0.94162 1.41367 1.30338 1.25456 1.31626 1.15745 0.80395 0.79701 0.82822 1.90830 1.65867 1.63165 1.27965 1.44716 1.31762 1.27694 1.32219 1.21628 0.94749 0.84401 0.93162 0.89924 1.22595 0.94602 1.01988 0.98128 1.22270 0.96410 1.02535 0.94072 1.22997 0.93902 1.03083 0.97350 1.23530 0.94063 0.99814 0.81461 0.88542 1.88375 1.81414 1.39543 1.20885 1.23800 0.74919 0.76356 0.93885 1.93064 1.38207 1.93108 1.95209 1.93051 1.78962 1.55935 1.92362 1.77246 1.04852 1.17963 1.17793 0.91854 0.96091 0.92397 0.78276 0.81605 0.74305 0.74914 0.91605 0.90638 0.89931 0.89913 0.89917 0.89677 0.77804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.46 13.29 21.45 0.28 -52.17 16 2 C 0.02 0.98 5.46 84.65 0.46 1.44 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.55 -31.06 9.23 25.60 0.24 -30.83 16 8 H 0.05 3.09 7.81 -2.92 -0.02 3.07 16 9 C 0.27 14.32 6.26 85.63 0.54 14.85 16 10 N -0.35 -16.52 3.67 -351.85 -1.29 -17.81 16 11 C 0.06 2.24 11.43 83.52 0.96 3.20 16 12 C -0.29 -11.74 9.61 22.10 0.21 -11.52 16 13 C 0.29 11.63 8.11 133.31 1.08 12.71 16 14 N -0.64 -19.73 5.46 -321.23 -1.75 -21.48 16 15 C 0.71 20.64 8.52 179.05 1.53 22.16 16 16 O -0.60 -21.36 13.15 -3.99 -0.05 -21.41 16 17 N -0.71 -13.88 4.60 -454.35 -2.09 -15.97 16 18 C 0.17 2.84 3.18 45.72 0.15 2.99 16 19 H 0.08 1.73 7.60 -2.39 -0.02 1.71 16 20 C -0.13 -2.03 6.59 31.32 0.21 -1.82 16 21 C -0.12 -1.11 6.83 31.67 0.22 -0.90 16 22 C -0.14 -1.32 6.22 31.89 0.20 -1.12 16 23 C 0.07 0.86 2.91 31.67 0.09 0.96 16 24 H 0.10 1.16 7.27 -2.39 -0.02 1.14 16 25 O -0.38 -4.71 9.03 -148.98 -1.35 -6.05 16 26 C 0.40 3.77 6.26 113.37 0.71 4.48 16 27 F -0.21 -2.46 16.57 44.97 0.75 -1.71 16 28 F -0.22 -3.16 16.68 44.97 0.75 -2.41 16 29 N -0.35 -16.39 12.42 -54.44 -0.68 -17.06 16 30 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 33 H 0.20 6.38 8.06 -2.91 -0.02 6.35 16 34 H 0.17 6.52 5.91 -2.91 -0.02 6.50 16 35 H 0.42 10.48 8.84 -92.71 -0.82 9.66 16 36 H 0.41 6.24 7.84 -92.70 -0.73 5.51 16 37 H 0.07 1.18 7.92 -2.39 -0.02 1.16 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.73 7.92 -2.38 -0.02 0.71 16 43 H 0.21 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -72.83 370.71 2.71 -70.12 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.47 Total: 23.57 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.58 Total: 16.60 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -5.52 Total: -124.50 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.40 Total: -27.46 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 1.50 Total: -4.13 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.83 2.71 -70.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337586658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.601 kcal (2) G-P(sol) polarization free energy of solvation -72.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds