Wall clock time and date at job start Wed Apr 1 2020 02:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00082 * 2 1 4 4 H 1.48495 * 109.46844 * 239.99916 * 3 2 1 5 5 H 1.48499 * 109.46764 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47332 * 119.99672 * 3 2 1 7 7 C 1.37879 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99944 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97548 * 125.00301 * 10 9 7 12 12 C 1.35246 * 107.85810 * 179.70803 * 11 10 9 13 13 C 1.40403 * 107.86702 * 0.42538 * 12 11 10 14 14 N 1.40191 * 125.97227 * 179.83047 * 13 12 11 15 15 C 1.34776 * 120.00291 * 359.71448 * 14 13 12 16 16 O 1.21591 * 119.99740 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00122 * 180.02562 * 15 14 13 18 18 C 1.47014 * 125.65230 * 359.95894 * 17 15 14 19 19 C 1.54432 * 107.28579 * 178.97392 * 18 17 15 20 20 C 1.55158 * 102.89115 * 337.81771 * 19 18 17 21 21 H 1.09002 * 111.00366 * 277.40227 * 20 19 18 22 22 C 1.53004 * 111.00209 * 153.59131 * 20 19 18 23 23 O 1.42898 * 109.46852 * 178.17870 * 22 20 19 24 24 C 1.42900 * 113.99978 * 180.02562 * 23 22 20 25 25 F 1.39904 * 109.47152 * 299.99718 * 24 23 22 26 26 F 1.39897 * 109.47183 * 59.99705 * 24 23 22 27 27 C 1.47427 * 125.64668 * 180.02562 * 17 15 14 28 28 N 1.31215 * 108.05534 * 359.56537 * 13 12 11 29 29 H 0.96997 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47065 * 59.99960 * 9 7 2 31 31 H 1.08992 * 109.47174 * 299.99382 * 9 7 2 32 32 H 1.08001 * 126.07111 * 359.97081 * 11 10 9 33 33 H 1.07998 * 126.06534 * 180.25947 * 12 11 10 34 34 H 0.97007 * 119.99867 * 179.71339 * 14 13 12 35 35 H 1.09003 * 109.88627 * 298.39718 * 18 17 15 36 36 H 1.09004 * 109.88272 * 59.40452 * 18 17 15 37 37 H 1.08996 * 110.76516 * 219.45627 * 19 18 17 38 38 H 1.09005 * 110.72213 * 96.15387 * 19 18 17 39 39 H 1.08999 * 109.47117 * 298.17537 * 22 20 19 40 40 H 1.08995 * 109.47315 * 58.17988 * 22 20 19 41 41 H 1.09006 * 109.47164 * 179.97438 * 24 23 22 42 42 H 1.09001 * 110.36908 * 85.25360 * 27 17 15 43 43 H 1.09000 * 110.46067 * 322.97720 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2421 -4.6225 0.8952 12 6 3.2566 -5.4462 0.5470 13 6 3.8684 -4.9151 -0.5998 14 7 4.9642 -5.4663 -1.2787 15 6 5.5283 -6.6066 -0.8340 16 8 5.0866 -7.1577 0.1558 17 7 6.5821 -7.1361 -1.4863 18 6 7.2134 -6.5771 -2.6906 19 6 8.3914 -7.5035 -3.0633 20 6 8.7068 -8.2187 -1.7230 21 1 9.3414 -7.5990 -1.0894 22 6 9.3496 -9.5853 -1.9686 23 8 9.6645 -10.1956 -0.7155 24 6 10.2731 -11.4832 -0.8328 25 9 9.4059 -12.3493 -1.5074 26 9 11.4695 -11.3700 -1.5491 27 6 7.2918 -8.3727 -1.1113 28 7 3.2316 -3.8159 -0.9284 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8903 32 1 1.5780 -4.7522 1.7371 33 1 3.5466 -6.3504 1.0614 34 1 5.3163 -5.0268 -2.0685 35 1 6.4923 -6.5475 -3.5075 36 1 7.5806 -5.5718 -2.4840 37 1 9.2489 -6.9216 -3.4011 38 1 8.0897 -8.2243 -3.8234 39 1 8.6544 -10.2204 -2.5176 40 1 10.2625 -9.4581 -2.5504 41 1 10.4813 -11.8786 0.1614 42 1 6.7882 -9.2422 -1.5338 43 1 7.3551 -8.4617 -0.0267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349689433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:00 Heat of formation + Delta-G solvation = -96.389091 kcal Electronic energy + Delta-G solvation = -29046.734122 eV Core-core repulsion = 24378.675113 eV Total energy + Delta-G solvation = -4668.059008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.56887 -47.68147 -40.83268 -40.00797 -38.68769 -37.37874 -34.70559 -33.42236 -32.65480 -30.77068 -29.89564 -29.25869 -27.30473 -26.47882 -25.25937 -23.59345 -22.84782 -21.39021 -20.95417 -20.19165 -19.34397 -18.81680 -18.39659 -18.24145 -17.89044 -16.88127 -16.55228 -16.32866 -15.77604 -15.49057 -15.18683 -14.86065 -14.72713 -14.40413 -14.19840 -14.04790 -13.88232 -13.80079 -13.71328 -13.20964 -13.06408 -12.78618 -12.71218 -12.45776 -12.26634 -12.17704 -11.78086 -11.75418 -11.64762 -11.24058 -11.05121 -10.93143 -10.85239 -10.42917 -10.23930 -10.06024 -9.67345 -9.48404 -8.87070 -8.61146 -8.07516 -7.38733 -6.22490 -4.27501 2.25103 2.42960 2.67459 3.11857 3.15136 3.26469 3.29607 3.33741 3.45881 3.84262 3.93102 3.97472 4.07685 4.18556 4.28009 4.34285 4.36915 4.66679 4.69506 4.75514 4.98413 5.06175 5.12451 5.23961 5.30798 5.46106 5.52189 5.60774 5.69320 5.84093 5.91940 5.96505 6.32597 6.56648 6.69132 6.84696 7.01873 7.12367 7.51276 7.71068 7.82358 7.96607 8.09205 8.58449 8.68460 8.82517 9.37848 10.86108 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.026658 B = 0.001737 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.088885 B =16113.166693 C =16703.579723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.320 5.320 11 C 0.052 3.948 12 C -0.286 4.286 13 C 0.275 3.725 14 N -0.641 5.641 15 C 0.732 3.268 16 O -0.563 6.563 17 N -0.637 5.637 18 C 0.095 3.905 19 C -0.120 4.120 20 C -0.100 4.100 21 H 0.100 0.900 22 C 0.060 3.940 23 O -0.382 6.382 24 C 0.406 3.594 25 F -0.208 7.208 26 F -0.210 7.210 27 C 0.136 3.864 28 N -0.308 5.308 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.406 0.594 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.169 0.831 42 H 0.068 0.932 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.110 -21.894 -5.253 30.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.318 4.318 13 C 0.022 3.978 14 N -0.291 5.291 15 C 0.433 3.567 16 O -0.438 6.438 17 N -0.377 5.377 18 C -0.028 4.028 19 C -0.158 4.158 20 C -0.120 4.120 21 H 0.118 0.882 22 C -0.016 4.016 23 O -0.303 6.303 24 C 0.314 3.686 25 F -0.190 7.190 26 F -0.192 7.192 27 C 0.013 3.987 28 N -0.139 5.139 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.185 0.815 42 H 0.086 0.914 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 20.336 -20.993 -5.166 29.681 hybrid contribution 0.697 0.408 -0.260 0.849 sum 21.033 -20.584 -5.426 29.926 Atomic orbital electron populations 1.69907 1.06023 1.27695 1.49744 1.24945 0.94987 0.99520 0.94645 0.86383 0.79369 0.81816 0.78895 1.19978 1.21063 1.20054 1.21224 0.93958 0.89418 1.52070 0.91373 1.19729 0.85610 0.81281 0.99245 1.49054 1.23279 1.19785 1.18109 1.22552 1.00354 0.90168 0.96773 1.21512 1.02096 1.06286 1.01876 1.18780 0.90622 0.94062 0.94385 1.41370 1.31461 1.24881 1.31362 1.15076 0.79140 0.80112 0.82346 1.90876 1.63859 1.62551 1.26538 1.47452 1.32643 1.27609 1.29995 1.22075 0.95059 0.97866 0.87813 1.22625 0.98103 0.98662 0.96406 1.22372 0.96574 0.94848 0.98157 0.88208 1.22657 1.00226 0.93818 0.84913 1.88446 1.79286 1.30702 1.31880 1.23194 0.73390 0.79828 0.92167 1.93076 1.71022 1.71008 1.83942 1.93065 1.48211 1.95771 1.82185 1.22064 0.89242 0.85795 1.01606 1.77322 1.03858 1.16336 1.16381 0.92298 0.93761 0.92524 0.81499 0.82216 0.75919 0.90967 0.90986 0.89212 0.89932 0.91166 0.91033 0.81465 0.91405 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 13.29 55.43 0.74 -24.68 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.79 9.24 -34.44 -0.32 -15.11 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.26 6.64 6.26 -5.19 -0.03 6.61 16 10 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 11 C 0.05 1.05 11.44 -17.24 -0.20 0.86 16 12 C -0.29 -5.89 9.61 -39.83 -0.38 -6.27 16 13 C 0.28 5.72 8.11 -154.36 -1.25 4.47 16 14 N -0.64 -10.54 5.41 -15.51 -0.08 -10.63 16 15 C 0.73 11.57 8.46 -86.92 -0.74 10.83 16 16 O -0.56 -10.74 13.73 5.29 0.07 -10.66 16 17 N -0.64 -7.16 3.33 -176.16 -0.59 -7.75 16 18 C 0.10 0.70 6.15 -3.01 -0.02 0.68 16 19 C -0.12 -0.58 6.43 -24.84 -0.16 -0.74 16 20 C -0.10 -0.62 3.31 -88.46 -0.29 -0.92 16 21 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 22 C 0.06 0.34 5.10 37.16 0.19 0.53 16 23 O -0.38 -2.54 10.55 -35.23 -0.37 -2.91 16 24 C 0.41 2.01 6.30 101.05 0.64 2.65 16 25 F -0.21 -1.42 16.88 2.25 0.04 -1.38 16 26 F -0.21 -1.34 16.88 2.25 0.04 -1.31 16 27 C 0.14 1.27 6.29 -2.52 -0.02 1.25 16 28 N -0.31 -7.22 12.42 31.44 0.39 -6.83 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.79 8.06 -52.49 -0.42 2.36 16 33 H 0.16 3.24 5.91 -52.49 -0.31 2.93 16 34 H 0.41 5.53 7.81 -40.82 -0.32 5.22 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.32 8.04 -51.93 -0.42 -0.10 16 39 H 0.07 0.38 7.63 -51.93 -0.40 -0.02 16 40 H 0.07 0.34 7.73 -51.93 -0.40 -0.06 16 41 H 0.17 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.61 7.96 -51.93 -0.41 0.20 16 43 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -34.77 373.37 -7.66 -42.43 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.60 Total: 3.01 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -2.67 Total: 6.46 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.23 Total: -57.68 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.30 Total: -13.57 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.77 -7.66 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349689433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.954 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds