Wall clock time and date at job start Wed Apr 1 2020 02:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00082 * 2 1 4 4 H 1.48495 * 109.46844 * 239.99916 * 3 2 1 5 5 H 1.48499 * 109.46764 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47332 * 119.99672 * 3 2 1 7 7 C 1.37879 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99944 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97548 * 125.00301 * 10 9 7 12 12 C 1.35246 * 107.85810 * 179.70803 * 11 10 9 13 13 C 1.40403 * 107.86702 * 0.42538 * 12 11 10 14 14 N 1.40191 * 125.97227 * 179.83047 * 13 12 11 15 15 C 1.34776 * 120.00291 * 359.71448 * 14 13 12 16 16 O 1.21591 * 119.99740 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00122 * 180.02562 * 15 14 13 18 18 C 1.47014 * 125.65230 * 359.95894 * 17 15 14 19 19 C 1.54432 * 107.28579 * 178.97392 * 18 17 15 20 20 C 1.55158 * 102.89115 * 337.81771 * 19 18 17 21 21 H 1.09002 * 111.00366 * 277.40227 * 20 19 18 22 22 C 1.53004 * 111.00209 * 153.59131 * 20 19 18 23 23 O 1.42898 * 109.46852 * 178.17870 * 22 20 19 24 24 C 1.42900 * 113.99978 * 180.02562 * 23 22 20 25 25 F 1.39904 * 109.47152 * 299.99718 * 24 23 22 26 26 F 1.39897 * 109.47183 * 59.99705 * 24 23 22 27 27 C 1.47427 * 125.64668 * 180.02562 * 17 15 14 28 28 N 1.31215 * 108.05534 * 359.56537 * 13 12 11 29 29 H 0.96997 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47065 * 59.99960 * 9 7 2 31 31 H 1.08992 * 109.47174 * 299.99382 * 9 7 2 32 32 H 1.08001 * 126.07111 * 359.97081 * 11 10 9 33 33 H 1.07998 * 126.06534 * 180.25947 * 12 11 10 34 34 H 0.97007 * 119.99867 * 179.71339 * 14 13 12 35 35 H 1.09003 * 109.88627 * 298.39718 * 18 17 15 36 36 H 1.09004 * 109.88272 * 59.40452 * 18 17 15 37 37 H 1.08996 * 110.76516 * 219.45627 * 19 18 17 38 38 H 1.09005 * 110.72213 * 96.15387 * 19 18 17 39 39 H 1.08999 * 109.47117 * 298.17537 * 22 20 19 40 40 H 1.08995 * 109.47315 * 58.17988 * 22 20 19 41 41 H 1.09006 * 109.47164 * 179.97438 * 24 23 22 42 42 H 1.09001 * 110.36908 * 85.25360 * 27 17 15 43 43 H 1.09000 * 110.46067 * 322.97720 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2421 -4.6225 0.8952 12 6 3.2566 -5.4462 0.5470 13 6 3.8684 -4.9151 -0.5998 14 7 4.9642 -5.4663 -1.2787 15 6 5.5283 -6.6066 -0.8340 16 8 5.0866 -7.1577 0.1558 17 7 6.5821 -7.1361 -1.4863 18 6 7.2134 -6.5771 -2.6906 19 6 8.3914 -7.5035 -3.0633 20 6 8.7068 -8.2187 -1.7230 21 1 9.3414 -7.5990 -1.0894 22 6 9.3496 -9.5853 -1.9686 23 8 9.6645 -10.1956 -0.7155 24 6 10.2731 -11.4832 -0.8328 25 9 9.4059 -12.3493 -1.5074 26 9 11.4695 -11.3700 -1.5491 27 6 7.2918 -8.3727 -1.1113 28 7 3.2316 -3.8159 -0.9284 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8903 32 1 1.5780 -4.7522 1.7371 33 1 3.5466 -6.3504 1.0614 34 1 5.3163 -5.0268 -2.0685 35 1 6.4923 -6.5475 -3.5075 36 1 7.5806 -5.5718 -2.4840 37 1 9.2489 -6.9216 -3.4011 38 1 8.0897 -8.2243 -3.8234 39 1 8.6544 -10.2204 -2.5176 40 1 10.2625 -9.4581 -2.5504 41 1 10.4813 -11.8786 0.1614 42 1 6.7882 -9.2422 -1.5338 43 1 7.3551 -8.4617 -0.0267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349689433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:59 Heat of formation + Delta-G solvation = -119.333221 kcal Electronic energy + Delta-G solvation = -29047.729054 eV Core-core repulsion = 24378.675113 eV Total energy + Delta-G solvation = -4669.053940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.99839 -48.12264 -42.27089 -41.22393 -39.45847 -38.09280 -36.23679 -35.29572 -33.65777 -32.45786 -30.94745 -30.48515 -28.69514 -27.61266 -25.92602 -24.92103 -24.07945 -22.62433 -21.93222 -21.47770 -20.62608 -19.37597 -19.05515 -18.73650 -18.67692 -18.63192 -18.11400 -17.42946 -17.05993 -16.54952 -16.39525 -15.98225 -15.80864 -15.55893 -15.24778 -14.88477 -14.59170 -14.49656 -14.42149 -14.27532 -14.23441 -14.04213 -13.82766 -13.79756 -13.55547 -13.12716 -13.02001 -12.90380 -12.71774 -12.27721 -12.24306 -12.18021 -12.09227 -11.73919 -11.65175 -11.41452 -11.39454 -11.14390 -10.71255 -9.89635 -9.69143 -9.05029 -8.31849 -6.46091 1.02119 1.07914 1.38849 1.40897 1.49655 1.66446 1.98067 2.08061 2.35872 2.36454 2.78053 2.88734 2.99682 3.44172 3.47805 3.73581 3.83628 3.91028 3.96530 4.21084 4.23528 4.26494 4.27782 4.43128 4.56729 4.63870 4.69245 4.81546 4.87473 4.89995 4.93966 4.98342 5.03080 5.09643 5.22809 5.36316 5.53949 5.57022 5.75584 5.86965 5.94829 6.28897 6.59327 6.67654 7.08931 7.23595 7.34240 8.75399 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.026658 B = 0.001737 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.088885 B =16113.166693 C =16703.579723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.059 3.941 12 C -0.294 4.294 13 C 0.284 3.716 14 N -0.634 5.634 15 C 0.726 3.274 16 O -0.601 6.601 17 N -0.630 5.630 18 C 0.084 3.916 19 C -0.108 4.108 20 C -0.089 4.089 21 H 0.098 0.902 22 C 0.059 3.941 23 O -0.398 6.398 24 C 0.402 3.598 25 F -0.221 7.221 26 F -0.219 7.219 27 C 0.130 3.870 28 N -0.346 5.346 29 H 0.273 0.727 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.165 0.835 34 H 0.419 0.581 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.206 0.794 42 H 0.071 0.929 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.090 -22.162 -5.879 32.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.325 4.325 13 C 0.028 3.972 14 N -0.286 5.286 15 C 0.428 3.572 16 O -0.480 6.480 17 N -0.368 5.368 18 C -0.038 4.038 19 C -0.145 4.145 20 C -0.108 4.108 21 H 0.116 0.884 22 C -0.017 4.017 23 O -0.320 6.320 24 C 0.311 3.689 25 F -0.203 7.203 26 F -0.201 7.201 27 C 0.008 3.992 28 N -0.177 5.177 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.182 0.818 34 H 0.256 0.744 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.222 0.778 42 H 0.089 0.911 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 22.370 -21.292 -5.837 31.430 hybrid contribution 0.154 0.348 -0.081 0.389 sum 22.524 -20.944 -5.918 31.321 Atomic orbital electron populations 1.69987 1.07197 1.28815 1.49861 1.25745 0.95864 1.02722 0.93899 0.85397 0.78277 0.77832 0.78902 1.19802 1.19797 1.19525 1.21370 0.93376 0.90967 1.52919 0.92953 1.19349 0.85657 0.81464 0.98158 1.48832 1.23875 1.20365 1.19494 1.23149 1.00400 0.88736 0.96723 1.21672 1.02305 1.06486 1.02084 1.19070 0.90803 0.93070 0.94217 1.41353 1.30474 1.25172 1.31551 1.15268 0.79937 0.79731 0.82305 1.90834 1.65336 1.63438 1.28343 1.47519 1.31030 1.27788 1.30467 1.22432 0.96167 0.98848 0.86359 1.22655 0.97700 0.98464 0.95720 1.22289 0.94240 0.95562 0.98709 0.88367 1.22705 1.00840 0.93313 0.84860 1.88436 1.79520 1.31532 1.32469 1.23790 0.72620 0.79120 0.93338 1.93051 1.71506 1.71345 1.84401 1.93045 1.48678 1.95781 1.82611 1.22232 0.91167 0.85097 1.00743 1.77243 1.04941 1.18009 1.17539 0.91846 0.96011 0.92289 0.78100 0.81810 0.74414 0.89941 0.90234 0.86738 0.88446 0.90931 0.89633 0.77790 0.91058 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.33 13.29 21.45 0.28 -52.05 16 2 C 0.02 1.01 5.46 84.66 0.46 1.47 16 3 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.17 9.24 25.60 0.24 -30.94 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 9 C 0.27 14.31 6.26 85.63 0.54 14.84 16 10 N -0.34 -16.50 3.67 -351.83 -1.29 -17.79 16 11 C 0.06 2.39 11.44 83.52 0.96 3.34 16 12 C -0.29 -12.13 9.61 22.11 0.21 -11.91 16 13 C 0.28 11.86 8.11 133.31 1.08 12.94 16 14 N -0.63 -20.71 5.41 -321.23 -1.74 -22.45 16 15 C 0.73 22.82 8.46 179.06 1.51 24.33 16 16 O -0.60 -23.19 13.73 -4.00 -0.05 -23.25 16 17 N -0.63 -13.56 3.33 -829.51 -2.76 -16.32 16 18 C 0.08 1.05 6.15 86.77 0.53 1.58 16 19 C -0.11 -0.69 6.43 31.82 0.20 -0.49 16 20 C -0.09 -0.92 3.31 -9.39 -0.03 -0.95 16 21 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 22 C 0.06 0.54 5.10 71.98 0.37 0.91 16 23 O -0.40 -4.69 10.55 -148.98 -1.57 -6.26 16 24 C 0.40 3.31 6.30 113.37 0.71 4.03 16 25 F -0.22 -2.73 16.88 44.97 0.76 -1.97 16 26 F -0.22 -2.44 16.88 44.97 0.76 -1.68 16 27 C 0.13 2.33 6.29 86.86 0.55 2.87 16 28 N -0.35 -16.50 12.42 -54.43 -0.68 -17.18 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 3.02 8.07 -2.39 -0.02 3.00 16 32 H 0.20 6.48 8.06 -2.91 -0.02 6.46 16 33 H 0.16 6.67 5.91 -2.91 -0.02 6.65 16 34 H 0.42 11.15 7.81 -92.70 -0.72 10.43 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.10 0.40 8.04 -2.38 -0.02 0.38 16 39 H 0.07 0.64 7.63 -2.39 -0.02 0.62 16 40 H 0.09 0.58 7.73 -2.39 -0.02 0.56 16 41 H 0.21 0.03 8.14 -2.38 -0.02 0.01 16 42 H 0.07 1.23 7.96 -2.39 -0.02 1.21 16 43 H 0.06 1.45 8.04 -2.39 -0.02 1.43 16 Total: -1.00 -76.23 373.37 3.41 -72.83 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.33 Total: 18.35 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 7.33 Total: 22.03 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -6.18 Total: -125.78 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.63 Total: -29.51 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 1.52 Total: -3.66 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -76.23 3.41 -72.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349689433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.505 kcal (2) G-P(sol) polarization free energy of solvation -76.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds