Wall clock time and date at job start Wed Apr 1 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 C 1.53004 * 109.46919 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47215 * 64.99709 * 4 3 2 6 6 C 1.36883 * 119.99740 * 264.14392 * 5 4 3 7 7 H 1.07999 * 119.99730 * 136.64128 * 6 5 4 8 8 C 1.39042 * 119.99789 * 316.64003 * 6 5 4 9 9 N 1.31366 * 120.00249 * 2.91759 * 8 6 5 10 10 Si 1.86807 * 119.99472 * 182.91088 * 8 6 5 11 11 H 1.48503 * 109.46736 * 60.00348 * 10 8 6 12 12 H 1.48499 * 109.46909 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47267 * 300.00160 * 10 8 6 14 14 C 1.34776 * 120.00425 * 84.14691 * 5 4 3 15 15 O 1.21616 * 119.99553 * 4.93838 * 14 5 4 16 16 C 1.47552 * 120.00154 * 184.93614 * 14 5 4 17 17 C 1.39226 * 120.27256 * 53.69856 * 16 14 5 18 18 C 1.40338 * 118.00344 * 179.97438 * 17 16 14 19 19 C 1.40665 * 121.07450 * 180.26932 * 18 17 16 20 20 C 1.35932 * 119.83677 * 180.28656 * 19 18 17 21 21 C 1.39929 * 120.77140 * 359.46039 * 20 19 18 22 22 O 1.35777 * 119.58928 * 180.27334 * 21 20 19 23 23 C 1.42901 * 116.99943 * 0.02562 * 22 21 20 24 24 C 1.37701 * 120.81943 * 0.24900 * 21 20 19 25 25 C 1.40322 * 119.68114 * 0.02562 * 24 21 20 26 26 N 1.33876 * 120.72917 * 179.97438 * 25 24 21 27 27 C 1.30813 * 121.72900 * 180.02562 * 26 25 24 28 28 C 1.50703 * 119.24677 * 179.97438 * 27 26 25 29 29 H 1.08991 * 109.47204 * 60.00776 * 1 2 3 30 30 H 1.09009 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47318 * 300.00283 * 1 2 3 32 32 H 1.08990 * 109.47354 * 59.99577 * 3 2 1 33 33 H 1.08999 * 109.46826 * 299.99630 * 3 2 1 34 34 H 1.09001 * 109.46842 * 304.99226 * 4 3 2 35 35 H 1.09003 * 109.47146 * 184.99674 * 4 3 2 36 36 H 0.97002 * 119.99392 * 180.02562 * 9 8 6 37 37 H 1.08001 * 120.99740 * 0.02562 * 17 16 14 38 38 H 1.07994 * 120.07721 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.61059 * 179.73225 * 20 19 18 40 40 H 1.09001 * 109.47045 * 299.99296 * 23 22 21 41 41 H 1.08991 * 109.47346 * 59.99648 * 23 22 21 42 42 H 1.09003 * 109.46881 * 180.02562 * 23 22 21 43 43 H 1.07995 * 120.16229 * 180.02562 * 24 21 20 44 44 H 1.09005 * 109.47187 * 85.66392 * 28 27 26 45 45 H 1.09004 * 109.47027 * 205.66530 * 28 27 26 46 46 H 1.08998 * 109.47512 * 325.66469 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2122 -0.7829 -1.3028 7 1 3.8613 -1.3618 -2.1444 8 6 4.9041 -1.4061 -0.2703 9 7 5.2807 -0.7130 0.7802 10 14 5.2979 -3.2291 -0.3769 11 1 6.1357 -3.4851 -1.5760 12 1 6.0369 -3.6479 0.8412 13 1 4.0349 -4.0031 -0.4809 14 6 4.1479 1.3203 -2.3552 15 8 4.0253 2.5284 -2.2893 16 6 4.4851 0.6820 -3.6420 17 6 3.6912 -0.3450 -4.1455 18 6 4.0555 -0.9178 -5.3737 19 6 3.2964 -1.9554 -5.9446 20 6 3.6756 -2.4960 -7.1327 21 6 4.8093 -2.0250 -7.8042 22 8 5.1630 -2.5788 -8.9924 23 6 4.3338 -3.6306 -9.4905 24 6 5.5704 -1.0067 -7.2752 25 6 5.2065 -0.4331 -6.0474 26 7 5.9316 0.5577 -5.5136 27 6 5.6106 1.1061 -4.3702 28 6 6.4671 2.2177 -3.8205 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6885 1.8464 0.8898 33 1 1.6886 1.8463 -0.8900 34 1 3.8514 0.5684 0.8410 35 1 3.9785 2.1766 0.0889 36 1 5.7638 -1.1479 1.5003 37 1 2.8207 -0.6899 -3.6073 38 1 2.4169 -2.3243 -5.4380 39 1 3.0925 -3.2954 -7.5656 40 1 4.3223 -4.4535 -8.7758 41 1 3.3194 -3.2577 -9.6315 42 1 4.7276 -3.9833 -10.4437 43 1 6.4431 -0.6511 -7.8027 44 1 6.1425 3.1690 -4.2424 45 1 6.3692 2.2491 -2.7354 46 1 7.5090 2.0390 -4.0863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457840557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:12 Heat of formation + Delta-G solvation = -68.843330 kcal Electronic energy + Delta-G solvation = -30675.015630 eV Core-core repulsion = 26530.087874 eV Total energy + Delta-G solvation = -4144.927756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06319 -40.78048 -39.87494 -38.51908 -37.19270 -36.57868 -34.45362 -33.48838 -32.62089 -31.61794 -30.48713 -28.70800 -28.08933 -27.27298 -26.62217 -25.11629 -23.83626 -23.43597 -22.97299 -21.28565 -19.98827 -19.34221 -17.97187 -17.93124 -17.36411 -17.20404 -16.93339 -16.87659 -16.69697 -16.13622 -16.05772 -15.91351 -15.76106 -15.40637 -15.10844 -14.77305 -14.52392 -14.30986 -13.98153 -13.91095 -13.53675 -13.39888 -13.32748 -13.16974 -13.00315 -12.94261 -12.77273 -12.66382 -12.49151 -12.41987 -12.13688 -12.08512 -11.85274 -11.74882 -11.08778 -10.99390 -10.74166 -10.50514 -10.28177 -9.49327 -9.44738 -8.90976 -8.17843 -6.07261 -0.65845 -0.27684 0.92934 1.43251 1.44453 1.52199 1.67819 2.09510 2.21824 2.34496 2.84903 3.02885 3.11105 3.17330 3.31187 3.57115 3.75651 3.78714 3.88566 4.00897 4.14963 4.28734 4.32569 4.41483 4.45976 4.48914 4.56680 4.57106 4.62312 4.66219 4.67735 4.70604 4.78339 4.81780 4.83742 4.92045 4.95367 4.99725 5.13134 5.18821 5.29801 5.41306 5.43020 5.65158 5.69153 6.04604 6.35490 6.43443 6.46841 6.89560 7.14715 7.54418 7.95503 8.78660 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.003794 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.908571 B = 7378.051617 C = 7778.242566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.065 3.935 4 C 0.099 3.901 5 N -0.426 5.426 6 C -0.328 4.328 7 H 0.094 0.906 8 C 0.008 3.992 9 N -0.896 5.896 10 Si 0.972 3.028 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.260 1.260 14 C 0.510 3.490 15 O -0.620 6.620 16 C -0.171 4.171 17 C -0.001 4.001 18 C -0.156 4.156 19 C -0.042 4.042 20 C -0.189 4.189 21 C 0.157 3.843 22 O -0.328 6.328 23 C 0.013 3.987 24 C -0.173 4.173 25 C 0.157 3.843 26 N -0.507 5.507 27 C 0.194 3.806 28 C -0.093 4.093 29 H 0.039 0.961 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.122 0.878 35 H 0.054 0.946 36 H 0.270 0.730 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.898 -7.383 -12.637 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.013 4.013 4 C -0.024 4.024 5 N -0.142 5.142 6 C -0.456 4.456 7 H 0.112 0.888 8 C -0.193 4.193 9 N -0.535 5.535 10 Si 0.797 3.203 11 H -0.202 1.202 12 H -0.206 1.206 13 H -0.184 1.184 14 C 0.299 3.701 15 O -0.509 6.509 16 C -0.177 4.177 17 C -0.027 4.027 18 C -0.158 4.158 19 C -0.060 4.060 20 C -0.207 4.207 21 C 0.109 3.891 22 O -0.241 6.241 23 C -0.081 4.081 24 C -0.193 4.193 25 C 0.035 3.965 26 N -0.217 5.217 27 C 0.042 3.958 28 C -0.150 4.150 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.139 0.861 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.167 0.833 38 H 0.182 0.818 39 H 0.192 0.808 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.139 0.861 43 H 0.156 0.844 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.879 -6.762 -13.032 15.815 hybrid contribution -0.688 -0.559 0.986 1.325 sum -6.567 -7.321 -12.046 15.551 Atomic orbital electron populations 1.22884 0.80774 1.03344 1.00144 1.88074 1.20291 1.27668 1.95282 1.22813 0.94693 0.84585 0.99200 1.21826 0.91115 0.98302 0.91174 1.43389 1.55642 1.07587 1.07576 1.19611 1.34627 0.82961 1.08436 0.88842 1.26139 0.94676 1.03377 0.95149 1.69622 1.37710 1.37888 1.08285 0.85297 0.78904 0.78584 0.77555 1.20168 1.20617 1.18410 1.18427 0.80542 0.85913 0.85186 1.90598 1.58602 1.14860 1.86817 1.20679 0.99300 1.00431 0.97247 1.21973 0.97682 0.90299 0.92779 1.18945 0.98789 1.01461 0.96604 1.21195 0.98295 0.92028 0.94490 1.21387 0.98052 1.04125 0.97092 1.18944 0.92755 0.91732 0.85645 1.86061 1.53654 1.51359 1.33022 1.23484 0.95583 0.88048 1.00991 1.19952 1.03612 0.99985 0.95764 1.18772 0.91109 0.92324 0.94286 1.67743 1.31201 1.10898 1.11881 1.21577 0.91452 0.93991 0.88785 1.20683 0.98889 0.95165 1.00272 0.94284 0.88669 0.93234 0.91682 0.95386 0.86053 0.92773 0.91949 0.83284 0.81822 0.80828 0.91160 0.90916 0.86094 0.84443 0.89210 0.92321 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.39 -16.04 10.46 -148.98 -1.56 -17.60 16 3 C 0.06 2.65 6.24 71.98 0.45 3.10 16 4 C 0.10 4.79 5.30 86.38 0.46 5.25 16 5 N -0.43 -21.49 2.50 -639.11 -1.60 -23.09 16 6 C -0.33 -16.53 8.22 84.10 0.69 -15.84 16 7 H 0.09 4.49 5.13 -2.91 -0.01 4.48 16 8 C 0.01 0.42 5.37 84.96 0.46 0.88 16 9 N -0.90 -47.28 10.67 21.68 0.23 -47.05 16 10 Si 0.97 40.52 29.55 68.60 2.03 42.55 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 14 C 0.51 25.48 5.98 86.70 0.52 26.00 16 15 O -0.62 -32.97 15.56 -4.08 -0.06 -33.04 16 16 C -0.17 -7.71 5.01 -20.01 -0.10 -7.81 16 17 C 0.00 -0.04 7.70 23.02 0.18 0.13 16 18 C -0.16 -5.37 5.74 -21.27 -0.12 -5.49 16 19 C -0.04 -1.03 9.75 22.33 0.22 -0.82 16 20 C -0.19 -3.91 8.94 22.14 0.20 -3.72 16 21 C 0.16 3.95 6.67 22.55 0.15 4.10 16 22 O -0.33 -6.96 10.47 -91.05 -0.95 -7.91 16 23 C 0.01 0.14 9.80 113.37 1.11 1.25 16 24 C -0.17 -5.45 9.93 22.65 0.22 -5.22 16 25 C 0.16 5.80 6.60 40.25 0.27 6.07 16 26 N -0.51 -20.68 10.20 -175.86 -1.79 -22.48 16 27 C 0.19 8.35 6.82 43.29 0.30 8.64 16 28 C -0.09 -3.64 9.39 71.24 0.67 -2.97 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.12 6.34 5.13 -2.39 -0.01 6.33 16 35 H 0.05 2.68 7.54 -2.39 -0.02 2.66 16 36 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 37 H 0.15 5.45 7.22 -2.91 -0.02 5.43 16 38 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 39 H 0.17 2.10 6.23 -2.91 -0.02 2.08 16 40 H 0.07 0.59 7.63 -2.39 -0.02 0.58 16 41 H 0.07 0.57 7.64 -2.39 -0.02 0.55 16 42 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 44 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 45 H 0.06 2.57 6.53 -2.38 -0.02 2.55 16 46 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -68.79 381.79 4.21 -64.58 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 1.01 Total: 28.53 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 6.91 Total: 15.50 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -3.16 Total: -92.62 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -2.57 Total: -58.55 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -68.79 4.21 -64.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457840557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.265 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds