Wall clock time and date at job start Wed Apr 1 2020 02:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86798 * 119.99809 * 2 1 4 4 H 1.48493 * 109.46894 * 274.98474 * 3 2 1 5 5 H 1.48500 * 109.47295 * 34.98476 * 3 2 1 6 6 H 1.48498 * 109.47047 * 154.98351 * 3 2 1 7 7 C 1.39892 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99662 * 147.60729 * 7 2 1 9 9 C 1.41153 * 120.00578 * 327.60712 * 7 2 1 10 10 C 1.40865 * 120.16585 * 157.92333 * 9 7 2 11 11 C 1.36377 * 119.82918 * 180.02562 * 10 9 7 12 12 C 1.39482 * 120.16887 * 0.02562 * 11 10 9 13 13 N 1.39240 * 119.83335 * 179.97438 * 12 11 10 14 14 C 1.34770 * 120.00185 * 37.79525 * 13 12 11 15 15 O 1.21580 * 119.99782 * 356.69018 * 14 13 12 16 16 N 1.34777 * 120.00104 * 176.69686 * 14 13 12 17 17 C 1.46500 * 120.00053 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46964 * 179.97438 * 17 16 14 19 19 H 1.08995 * 109.47327 * 55.00567 * 18 17 16 20 20 C 1.52990 * 109.47321 * 294.99917 * 18 17 16 21 21 O 1.42903 * 109.47033 * 65.00163 * 20 18 17 22 22 C 1.53007 * 109.46958 * 174.99954 * 18 17 16 23 23 C 1.50693 * 109.46976 * 184.99776 * 22 18 17 24 24 C 1.34517 * 125.78522 * 90.00298 * 23 22 18 25 25 C 1.41387 * 106.83850 * 179.76980 * 24 23 22 26 26 C 1.34515 * 106.84031 * 0.22739 * 25 24 23 27 27 O 1.34300 * 108.41999 * 359.97438 * 26 25 24 28 28 C 1.39481 * 120.33281 * 0.25659 * 12 11 10 29 29 C 1.36379 * 120.16636 * 359.43960 * 28 12 11 30 30 H 0.97002 * 120.00196 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.08597 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.91343 * 180.02562 * 11 10 9 33 33 H 0.97007 * 119.99605 * 217.79111 * 13 12 11 34 34 H 0.97001 * 120.00242 * 359.97438 * 16 14 13 35 35 H 1.08996 * 109.46933 * 60.00292 * 17 16 14 36 36 H 1.09004 * 109.47331 * 300.00265 * 17 16 14 37 37 H 1.08999 * 109.47247 * 184.99762 * 20 18 17 38 38 H 1.08997 * 109.47825 * 305.00283 * 20 18 17 39 39 H 0.96697 * 114.00530 * 179.97438 * 21 20 18 40 40 H 1.09003 * 109.46709 * 65.00370 * 22 18 17 41 41 H 1.08998 * 109.47086 * 305.00292 * 22 18 17 42 42 H 1.08000 * 126.58502 * 0.03763 * 24 23 22 43 43 H 1.08002 * 126.58005 * 180.19205 * 25 24 23 44 44 H 1.08003 * 125.78626 * 180.02562 * 26 25 24 45 45 H 1.07997 * 119.91701 * 179.70128 * 28 12 11 46 46 H 1.08002 * 120.08444 * 180.24926 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3849 2.1072 -1.3947 5 1 1.4969 2.6200 0.8027 6 1 3.5890 1.4121 0.5921 7 6 2.0082 -1.2115 0.0005 8 1 2.9622 -1.2845 -0.5005 9 6 1.4673 -2.3386 0.6559 10 6 1.8849 -3.6349 0.2960 11 6 1.3574 -4.7190 0.9333 12 6 0.4061 -4.5468 1.9388 13 7 -0.1283 -5.6586 2.5845 14 6 0.6569 -6.7177 2.8640 15 8 1.8166 -6.7276 2.4992 16 7 0.1565 -7.7658 3.5478 17 6 1.0099 -8.9172 3.8511 18 6 0.2036 -9.9585 4.6299 19 1 -0.6932 -10.2185 4.0677 20 6 -0.1960 -9.3817 5.9894 21 8 -1.0866 -8.2809 5.7966 22 6 1.0559 -11.2120 4.8384 23 6 0.2233 -12.2819 5.4963 24 6 -0.5133 -13.2090 4.8581 25 6 -1.1209 -14.0067 5.8549 26 6 -0.7233 -13.5161 7.0426 27 8 0.0887 -12.4700 6.8193 28 6 -0.0167 -3.2667 2.2966 29 6 0.5063 -2.1727 1.6726 30 1 -0.4850 0.8400 -0.0004 31 1 2.6205 -3.7699 -0.4832 32 1 1.6769 -5.7134 0.6588 33 1 -1.0659 -5.6708 2.8333 34 1 -0.7687 -7.7577 3.8391 35 1 1.8590 -8.5919 4.4522 36 1 1.3704 -9.3573 2.9213 37 1 -0.6930 -10.1520 6.5791 38 1 0.6953 -9.0400 6.5155 39 1 -1.3822 -7.8654 6.6182 40 1 1.9069 -10.9708 5.4754 41 1 1.4144 -11.5721 3.8741 42 1 -0.6170 -13.3249 3.7894 43 1 -1.7786 -14.8480 5.6936 44 1 -1.0080 -13.8992 8.0114 45 1 -0.7572 -3.1413 3.0728 46 1 0.1809 -1.1819 1.9535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514505730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:07 Heat of formation + Delta-G solvation = -46.783774 kcal Electronic energy + Delta-G solvation = -28540.543708 eV Core-core repulsion = 24396.572527 eV Total energy + Delta-G solvation = -4143.971182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.94937 -39.79743 -38.24640 -37.14945 -35.41674 -34.30595 -33.64046 -33.17427 -32.75704 -30.03302 -29.44108 -28.74659 -26.17130 -26.02993 -24.42962 -22.14676 -21.68765 -21.18094 -20.73845 -20.53327 -19.81518 -18.01257 -17.77602 -17.45064 -17.16803 -16.63233 -16.28100 -15.97925 -15.23908 -15.07099 -14.70899 -14.64721 -14.44697 -13.88207 -13.69776 -13.26799 -13.19978 -13.11494 -12.95675 -12.85543 -12.69691 -12.47997 -12.29532 -11.98257 -11.90176 -11.47273 -11.35422 -11.08590 -11.02348 -10.87214 -10.44965 -10.32786 -10.21232 -10.09181 -9.62794 -9.46730 -9.04003 -8.82317 -8.70387 -8.55288 -7.44339 -7.02737 -6.77871 -4.17520 1.34886 2.25420 2.59214 2.75940 3.09039 3.10366 3.18980 3.20353 3.29892 3.80422 3.88033 3.95738 4.23168 4.42863 4.60383 4.61207 4.67658 4.73129 4.86806 5.00045 5.06479 5.08441 5.26225 5.29168 5.46210 5.47597 5.57928 5.74033 5.76838 5.78643 5.91109 6.13947 6.28887 6.53115 6.76652 6.85537 6.88827 7.01157 7.09601 7.21804 7.30918 7.40654 7.50297 7.69626 8.01231 8.08958 8.13573 8.36385 8.65189 8.69971 8.93470 9.02504 9.30780 10.10954 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.038295 B = 0.001669 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.998301 B =16767.966957 C =17063.174577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.089 3.911 3 Si 0.894 3.106 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.469 4.469 8 H 0.081 0.919 9 C 0.110 3.890 10 C -0.222 4.222 11 C -0.068 4.068 12 C 0.004 3.996 13 N -0.667 5.667 14 C 0.694 3.306 15 O -0.588 6.588 16 N -0.742 5.742 17 C 0.151 3.849 18 C -0.098 4.098 19 H 0.090 0.910 20 C 0.082 3.918 21 O -0.570 6.570 22 C -0.032 4.032 23 C -0.008 4.008 24 C -0.208 4.208 25 C -0.212 4.212 26 C -0.046 4.046 27 O -0.177 6.177 28 C -0.106 4.106 29 C -0.170 4.170 30 H 0.282 0.718 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.390 0.610 34 H 0.402 0.598 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.382 0.618 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.201 0.799 45 H 0.088 0.912 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 -22.586 14.189 27.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.497 4.497 8 H 0.099 0.901 9 C 0.107 3.893 10 C -0.242 4.242 11 C -0.088 4.088 12 C -0.089 4.089 13 N -0.313 5.313 14 C 0.394 3.606 15 O -0.466 6.466 16 N -0.402 5.402 17 C 0.026 3.974 18 C -0.117 4.117 19 H 0.108 0.892 20 C 0.004 3.996 21 O -0.377 6.377 22 C -0.070 4.070 23 C -0.058 4.058 24 C -0.227 4.227 25 C -0.232 4.232 26 C -0.113 4.113 27 O -0.073 6.073 28 C -0.127 4.127 29 C -0.190 4.190 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.223 0.777 34 H 0.240 0.760 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.230 0.770 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.218 0.782 45 H 0.106 0.894 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.162 -22.444 13.444 26.491 hybrid contribution -0.941 0.603 0.872 1.418 sum -5.103 -21.841 14.316 26.609 Atomic orbital electron populations 1.69961 1.08030 1.29662 1.31942 1.25909 0.94328 1.01377 0.91611 0.86542 0.81555 0.81029 0.79109 1.19553 1.19978 1.18160 1.19467 1.05445 0.93832 1.30933 0.90138 1.17582 0.89876 0.91841 0.89979 1.20597 1.06995 0.92333 1.04292 1.20341 0.96571 0.98041 0.93856 1.16878 1.06659 0.84219 1.01138 1.42036 1.11458 1.16000 1.61759 1.16040 0.84975 0.80288 0.79282 1.90887 1.16411 1.80768 1.58528 1.45092 1.15793 1.18338 1.60999 1.20974 0.92622 0.84970 0.98846 1.21458 0.99709 0.93948 0.96579 0.89167 1.22231 0.92856 0.88348 0.96117 1.86271 1.66461 1.48674 1.36264 1.20062 0.96173 0.89831 1.00917 1.22353 1.02655 1.00268 0.80543 1.21646 1.02107 0.98141 1.00826 1.21859 1.05382 1.03528 0.92383 1.24027 0.96748 0.90103 1.00444 1.84028 1.54455 1.43045 1.25762 1.20160 1.01033 0.91574 0.99891 1.20594 1.02530 0.96538 0.99315 0.90756 0.88851 0.87863 0.77718 0.76018 0.91860 0.91655 0.93426 0.93250 0.76988 0.89233 0.87483 0.83381 0.83515 0.78214 0.89388 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.95 11.78 55.54 0.65 -19.29 16 2 C 0.09 2.25 4.77 -17.34 -0.08 2.16 16 3 Si 0.89 18.63 29.66 -169.99 -5.04 13.59 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.47 -12.73 8.94 -37.86 -0.34 -13.07 16 8 H 0.08 2.12 8.02 -52.48 -0.42 1.70 16 9 C 0.11 3.03 5.57 -106.80 -0.60 2.44 16 10 C -0.22 -5.87 9.74 -39.26 -0.38 -6.26 16 11 C -0.07 -1.72 8.59 -39.79 -0.34 -2.06 16 12 C 0.00 0.08 6.25 -83.57 -0.52 -0.44 16 13 N -0.67 -12.73 5.30 -14.10 -0.07 -12.81 16 14 C 0.69 13.18 8.37 -86.92 -0.73 12.46 16 15 O -0.59 -13.60 13.96 5.30 0.07 -13.52 16 16 N -0.74 -10.29 5.01 -65.23 -0.33 -10.62 16 17 C 0.15 1.72 5.06 -4.04 -0.02 1.70 16 18 C -0.10 -0.80 2.28 -90.62 -0.21 -1.00 16 19 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 20 C 0.08 0.65 6.32 37.15 0.23 0.89 16 21 O -0.57 -4.77 10.88 -35.23 -0.38 -5.15 16 22 C -0.03 -0.21 5.22 -27.88 -0.15 -0.36 16 23 C -0.01 -0.06 5.74 -35.63 -0.20 -0.27 16 24 C -0.21 -1.62 10.81 -39.70 -0.43 -2.05 16 25 C -0.21 -1.50 10.91 -39.70 -0.43 -1.93 16 26 C -0.05 -0.30 12.09 29.42 0.36 0.06 16 27 O -0.18 -1.47 9.91 5.73 0.06 -1.42 16 28 C -0.11 -2.52 9.90 -39.79 -0.39 -2.92 16 29 C -0.17 -4.47 8.74 -39.26 -0.34 -4.82 16 30 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 31 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.10 2.60 6.45 -52.49 -0.34 2.26 16 33 H 0.39 6.09 8.84 -40.82 -0.36 5.73 16 34 H 0.40 4.89 6.30 -40.82 -0.26 4.63 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.37 6.65 -51.93 -0.35 0.02 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.38 1.84 9.12 45.56 0.42 2.25 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.20 0.60 8.06 -52.48 -0.42 0.18 16 45 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 46 H 0.11 2.82 6.52 -52.49 -0.34 2.48 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -33.97 386.45 -9.23 -43.20 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -5.43 Total: 15.66 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -4.58 Total: -15.46 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.25 Total: -42.72 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.25 Total: -20.09 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.04 Total: 13.59 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.97 -9.23 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514505730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.585 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds