Wall clock time and date at job start Wed Apr 1 2020 02:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86798 * 119.99809 * 2 1 4 4 H 1.48493 * 109.46894 * 274.98474 * 3 2 1 5 5 H 1.48500 * 109.47295 * 34.98476 * 3 2 1 6 6 H 1.48498 * 109.47047 * 154.98351 * 3 2 1 7 7 C 1.39892 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99662 * 147.60729 * 7 2 1 9 9 C 1.41153 * 120.00578 * 327.60712 * 7 2 1 10 10 C 1.40865 * 120.16585 * 157.92333 * 9 7 2 11 11 C 1.36377 * 119.82918 * 180.02562 * 10 9 7 12 12 C 1.39482 * 120.16887 * 0.02562 * 11 10 9 13 13 N 1.39240 * 119.83335 * 179.97438 * 12 11 10 14 14 C 1.34770 * 120.00185 * 37.79525 * 13 12 11 15 15 O 1.21580 * 119.99782 * 356.69018 * 14 13 12 16 16 N 1.34777 * 120.00104 * 176.69686 * 14 13 12 17 17 C 1.46500 * 120.00053 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46964 * 179.97438 * 17 16 14 19 19 H 1.08995 * 109.47327 * 55.00567 * 18 17 16 20 20 C 1.52990 * 109.47321 * 294.99917 * 18 17 16 21 21 O 1.42903 * 109.47033 * 65.00163 * 20 18 17 22 22 C 1.53007 * 109.46958 * 174.99954 * 18 17 16 23 23 C 1.50693 * 109.46976 * 184.99776 * 22 18 17 24 24 C 1.34517 * 125.78522 * 90.00298 * 23 22 18 25 25 C 1.41387 * 106.83850 * 179.76980 * 24 23 22 26 26 C 1.34515 * 106.84031 * 0.22739 * 25 24 23 27 27 O 1.34300 * 108.41999 * 359.97438 * 26 25 24 28 28 C 1.39481 * 120.33281 * 0.25659 * 12 11 10 29 29 C 1.36379 * 120.16636 * 359.43960 * 28 12 11 30 30 H 0.97002 * 120.00196 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.08597 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.91343 * 180.02562 * 11 10 9 33 33 H 0.97007 * 119.99605 * 217.79111 * 13 12 11 34 34 H 0.97001 * 120.00242 * 359.97438 * 16 14 13 35 35 H 1.08996 * 109.46933 * 60.00292 * 17 16 14 36 36 H 1.09004 * 109.47331 * 300.00265 * 17 16 14 37 37 H 1.08999 * 109.47247 * 184.99762 * 20 18 17 38 38 H 1.08997 * 109.47825 * 305.00283 * 20 18 17 39 39 H 0.96697 * 114.00530 * 179.97438 * 21 20 18 40 40 H 1.09003 * 109.46709 * 65.00370 * 22 18 17 41 41 H 1.08998 * 109.47086 * 305.00292 * 22 18 17 42 42 H 1.08000 * 126.58502 * 0.03763 * 24 23 22 43 43 H 1.08002 * 126.58005 * 180.19205 * 25 24 23 44 44 H 1.08003 * 125.78626 * 180.02562 * 26 25 24 45 45 H 1.07997 * 119.91701 * 179.70128 * 28 12 11 46 46 H 1.08002 * 120.08444 * 180.24926 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3849 2.1072 -1.3947 5 1 1.4969 2.6200 0.8027 6 1 3.5890 1.4121 0.5921 7 6 2.0082 -1.2115 0.0005 8 1 2.9622 -1.2845 -0.5005 9 6 1.4673 -2.3386 0.6559 10 6 1.8849 -3.6349 0.2960 11 6 1.3574 -4.7190 0.9333 12 6 0.4061 -4.5468 1.9388 13 7 -0.1283 -5.6586 2.5845 14 6 0.6569 -6.7177 2.8640 15 8 1.8166 -6.7276 2.4992 16 7 0.1565 -7.7658 3.5478 17 6 1.0099 -8.9172 3.8511 18 6 0.2036 -9.9585 4.6299 19 1 -0.6932 -10.2185 4.0677 20 6 -0.1960 -9.3817 5.9894 21 8 -1.0866 -8.2809 5.7966 22 6 1.0559 -11.2120 4.8384 23 6 0.2233 -12.2819 5.4963 24 6 -0.5133 -13.2090 4.8581 25 6 -1.1209 -14.0067 5.8549 26 6 -0.7233 -13.5161 7.0426 27 8 0.0887 -12.4700 6.8193 28 6 -0.0167 -3.2667 2.2966 29 6 0.5063 -2.1727 1.6726 30 1 -0.4850 0.8400 -0.0004 31 1 2.6205 -3.7699 -0.4832 32 1 1.6769 -5.7134 0.6588 33 1 -1.0659 -5.6708 2.8333 34 1 -0.7687 -7.7577 3.8391 35 1 1.8590 -8.5919 4.4522 36 1 1.3704 -9.3573 2.9213 37 1 -0.6930 -10.1520 6.5791 38 1 0.6953 -9.0400 6.5155 39 1 -1.3822 -7.8654 6.6182 40 1 1.9069 -10.9708 5.4754 41 1 1.4144 -11.5721 3.8741 42 1 -0.6170 -13.3249 3.7894 43 1 -1.7786 -14.8480 5.6936 44 1 -1.0080 -13.8992 8.0114 45 1 -0.7572 -3.1413 3.0728 46 1 0.1809 -1.1819 1.9535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514505730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:06 Heat of formation + Delta-G solvation = -69.782002 kcal Electronic energy + Delta-G solvation = -28541.540986 eV Core-core repulsion = 24396.572527 eV Total energy + Delta-G solvation = -4144.968460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.47408 -41.31201 -39.44412 -38.61652 -36.33587 -35.93718 -34.91357 -34.41867 -33.71393 -31.44676 -31.04205 -30.28181 -27.29504 -26.73364 -26.00997 -23.43253 -22.69999 -22.57761 -21.90835 -21.65325 -20.97868 -19.40457 -19.05685 -18.44391 -18.22540 -17.99660 -17.08676 -16.95467 -16.78340 -16.27095 -15.98633 -15.74731 -15.58783 -15.25214 -15.01479 -14.73301 -14.45338 -13.97104 -13.86914 -13.81382 -13.71877 -13.62352 -13.56363 -13.30949 -13.26471 -12.92444 -12.80606 -12.64715 -12.30117 -12.16660 -11.90464 -11.71924 -11.54579 -11.22020 -10.93576 -10.88187 -10.77613 -10.46986 -9.93340 -9.43997 -9.34619 -8.93686 -8.66855 -6.19001 0.81939 0.90775 1.17084 1.39435 1.46890 1.57941 1.71769 1.89202 2.16054 2.21772 2.29579 2.70413 3.17414 3.48087 3.64465 3.74875 3.93845 4.05192 4.17358 4.19933 4.28504 4.41852 4.44496 4.49360 4.53642 4.60142 4.67897 4.77118 4.89969 4.93509 4.98677 5.04657 5.13743 5.18120 5.20048 5.28760 5.31969 5.49992 5.62677 5.65498 5.68519 5.83945 6.06867 6.16635 6.24572 6.32432 6.41593 6.66052 6.87754 6.92809 7.04078 7.30479 7.78411 8.24272 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.038295 B = 0.001669 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.998301 B =16767.966957 C =17063.174577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.052 3.948 3 Si 0.972 3.028 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.074 0.926 9 C 0.081 3.919 10 C -0.242 4.242 11 C -0.078 4.078 12 C 0.015 3.985 13 N -0.660 5.660 14 C 0.690 3.310 15 O -0.631 6.631 16 N -0.719 5.719 17 C 0.147 3.853 18 C -0.084 4.084 19 H 0.090 0.910 20 C 0.085 3.915 21 O -0.586 6.586 22 C -0.028 4.028 23 C -0.021 4.021 24 C -0.221 4.221 25 C -0.229 4.229 26 C -0.046 4.046 27 O -0.190 6.190 28 C -0.103 4.103 29 C -0.187 4.187 30 H 0.294 0.706 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.410 0.590 34 H 0.414 0.586 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.398 0.602 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.232 0.768 45 H 0.122 0.878 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 -23.109 15.791 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.167 4.167 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.263 4.263 11 C -0.099 4.099 12 C -0.078 4.078 13 N -0.308 5.308 14 C 0.391 3.609 15 O -0.512 6.512 16 N -0.379 5.379 17 C 0.023 3.977 18 C -0.103 4.103 19 H 0.108 0.892 20 C 0.007 3.993 21 O -0.395 6.395 22 C -0.065 4.065 23 C -0.071 4.071 24 C -0.240 4.240 25 C -0.248 4.248 26 C -0.113 4.113 27 O -0.087 6.087 28 C -0.124 4.124 29 C -0.207 4.207 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.246 0.754 34 H 0.254 0.746 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.248 0.752 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.173 0.827 43 H 0.180 0.820 44 H 0.248 0.752 45 H 0.140 0.860 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.311 -23.017 15.085 28.028 hybrid contribution -0.687 0.590 0.434 1.004 sum -5.998 -22.427 15.520 27.925 Atomic orbital electron populations 1.69953 1.09349 1.31364 1.31720 1.26708 0.95074 1.04368 0.90528 0.85376 0.79619 0.76214 0.79640 1.18419 1.18464 1.18635 1.19677 1.05816 0.95381 1.32676 0.90811 1.17906 0.90930 0.92374 0.90991 1.20716 1.07785 0.92739 1.05018 1.20432 0.97355 0.97468 0.94618 1.16917 1.05302 0.85589 1.00042 1.41832 1.12499 1.15003 1.61431 1.16232 0.84382 0.80928 0.79391 1.90865 1.18410 1.81690 1.60278 1.44985 1.16507 1.17346 1.59040 1.21161 0.92694 0.84696 0.99180 1.21330 0.99262 0.93442 0.96236 0.89210 1.22206 0.92886 0.88406 0.95807 1.86198 1.66554 1.48887 1.37836 1.20049 0.95889 0.88922 1.01680 1.22473 1.03200 1.00778 0.80600 1.21925 1.02176 0.98370 1.01544 1.22167 1.05967 1.04197 0.92491 1.24706 0.95623 0.89230 1.01752 1.84024 1.54977 1.43756 1.25965 1.20418 1.01089 0.90866 0.99979 1.20622 1.03167 0.97062 0.99808 0.89549 0.89058 0.88149 0.75395 0.74621 0.92589 0.91844 0.92965 0.93240 0.75182 0.88617 0.86327 0.82661 0.82039 0.75180 0.86010 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.46 11.78 21.82 0.26 -41.20 16 2 C 0.05 2.67 4.77 85.23 0.41 3.07 16 3 Si 0.97 38.19 29.66 68.60 2.03 40.22 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 7 C -0.51 -28.44 8.94 23.39 0.21 -28.23 16 8 H 0.07 4.06 8.02 -2.91 -0.02 4.04 16 9 C 0.08 4.59 5.57 -21.28 -0.12 4.47 16 10 C -0.24 -13.32 9.74 22.48 0.22 -13.10 16 11 C -0.08 -4.05 8.59 22.14 0.19 -3.86 16 12 C 0.02 0.72 6.25 38.56 0.24 0.96 16 13 N -0.66 -24.25 5.30 -316.79 -1.68 -25.93 16 14 C 0.69 25.58 8.37 179.06 1.50 27.08 16 15 O -0.63 -29.24 13.96 -3.97 -0.06 -29.29 16 16 N -0.72 -18.83 5.01 -478.54 -2.40 -21.23 16 17 C 0.15 3.18 5.06 86.38 0.44 3.62 16 18 C -0.08 -1.22 2.28 -10.79 -0.02 -1.25 16 19 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 20 C 0.08 1.19 6.32 71.98 0.45 1.64 16 21 O -0.59 -8.51 10.88 -148.98 -1.62 -10.13 16 22 C -0.03 -0.33 5.22 29.85 0.16 -0.17 16 23 C -0.02 -0.30 5.74 24.83 0.14 -0.16 16 24 C -0.22 -3.15 10.81 22.19 0.24 -2.91 16 25 C -0.23 -2.85 10.91 22.19 0.24 -2.61 16 26 C -0.05 -0.52 12.09 66.97 0.81 0.29 16 27 O -0.19 -2.87 9.91 -2.43 -0.02 -2.90 16 28 C -0.10 -4.83 9.90 22.14 0.22 -4.61 16 29 C -0.19 -9.96 8.74 22.48 0.20 -9.76 16 30 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 31 H 0.09 4.85 8.06 -2.91 -0.02 4.83 16 32 H 0.10 5.18 6.45 -2.91 -0.02 5.16 16 33 H 0.41 11.81 8.84 -92.70 -0.82 10.99 16 34 H 0.41 9.12 6.30 -92.71 -0.58 8.54 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.05 0.71 6.65 -2.39 -0.02 0.69 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.40 2.94 9.12 -74.06 -0.68 2.27 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 44 H 0.23 0.77 8.06 -2.91 -0.02 0.74 16 45 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 46 H 0.10 5.32 6.52 -2.91 -0.02 5.30 16 Total: -1.00 -74.56 386.45 1.00 -73.57 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: -1.04 Total: 42.44 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 5.52 Total: -25.54 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -3.82 Total: -88.37 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -1.70 Total: -42.32 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -74.56 1.00 -73.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514505730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.786 kcal (2) G-P(sol) polarization free energy of solvation -74.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds