Wall clock time and date at job start Wed Apr 1 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21256 * 119.99511 * 2 1 4 4 C 1.47184 * 120.00465 * 179.97438 * 2 1 3 5 5 C 1.39763 * 120.13409 * 353.94923 * 4 2 1 6 6 C 1.38588 * 119.74610 * 180.02562 * 5 4 2 7 7 N 1.39759 * 119.99063 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99910 * 143.60926 * 7 6 5 9 9 O 1.21382 * 120.00123 * 5.01003 * 8 7 6 10 10 C 1.49351 * 120.00225 * 185.01314 * 8 7 6 11 11 O 1.21357 * 119.99841 * 5.10378 * 10 8 7 12 12 N 1.34777 * 120.00284 * 185.10517 * 10 8 7 13 13 C 1.46492 * 120.00061 * 185.06518 * 12 10 8 14 14 C 1.52999 * 109.47278 * 184.55877 * 13 12 10 15 15 C 1.50710 * 115.54595 * 300.79107 * 14 13 12 16 16 H 1.07996 * 120.00028 * 94.97218 * 15 14 13 17 17 C 1.37876 * 119.99856 * 274.68549 * 15 14 13 18 18 N 1.31515 * 120.00059 * 355.75708 * 17 15 14 19 19 Si 1.86798 * 119.99965 * 175.74977 * 17 15 14 20 20 H 1.48498 * 109.46957 * 60.00524 * 19 17 15 21 21 H 1.48499 * 109.47059 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47242 * 300.00422 * 19 17 15 23 23 C 1.52997 * 117.50309 * 86.45399 * 14 13 12 24 24 C 1.52991 * 117.50366 * 155.12076 * 14 13 12 25 25 C 1.39085 * 120.01462 * 0.25279 * 6 5 4 26 26 C 1.38240 * 120.27531 * 359.48735 * 25 6 5 27 27 C 1.37961 * 120.25676 * 0.51332 * 26 25 6 28 28 C 1.50703 * 120.01350 * 179.72180 * 27 26 25 29 29 H 1.08996 * 109.46734 * 269.99717 * 1 2 3 30 30 H 1.08998 * 109.47379 * 30.00687 * 1 2 3 31 31 H 1.09001 * 109.46450 * 150.00055 * 1 2 3 32 32 H 1.08004 * 120.12773 * 0.03932 * 5 4 2 33 33 H 0.96993 * 120.00168 * 323.60064 * 7 6 5 34 34 H 0.97004 * 119.99365 * 5.05712 * 12 10 8 35 35 H 1.09002 * 109.47502 * 64.55929 * 13 12 10 36 36 H 1.08996 * 109.47185 * 304.55592 * 13 12 10 37 37 H 0.97003 * 119.99825 * 185.00148 * 18 17 15 38 38 H 1.08998 * 117.50231 * 215.00287 * 23 14 13 39 39 H 1.09005 * 117.49356 * 0.03168 * 23 14 13 40 40 H 1.08997 * 117.50005 * 359.97427 * 24 14 13 41 41 H 1.09002 * 117.50380 * 144.97670 * 24 14 13 42 42 H 1.08007 * 119.86418 * 179.72170 * 25 6 5 43 43 H 1.07997 * 119.87316 * 180.26066 * 26 25 6 44 44 H 1.09002 * 109.47189 * 263.53411 * 28 27 26 45 45 H 1.09000 * 109.47009 * 23.53482 * 28 27 26 46 46 H 1.09004 * 109.47157 * 143.53306 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5530 -2.4832 0.1285 6 6 2.2541 -3.6787 0.1286 7 7 1.5693 -4.8902 0.2568 8 6 1.9905 -5.9772 -0.4197 9 8 3.0155 -5.9291 -1.0681 10 6 1.1960 -7.2409 -0.3716 11 8 0.1252 -7.2631 0.1992 12 7 1.6681 -8.3566 -0.9622 13 6 0.8414 -9.5650 -1.0118 14 6 1.6478 -10.7097 -1.6283 15 6 2.1562 -10.4673 -3.0262 16 1 3.1563 -10.0894 -3.1791 17 6 1.3467 -10.7335 -4.1101 18 7 0.1628 -11.2769 -3.9289 19 14 1.9313 -10.3222 -5.8359 20 1 3.1793 -11.0722 -6.1275 21 1 0.8838 -10.7028 -6.8172 22 1 2.1954 -8.8643 -5.9348 23 6 2.5272 -11.5395 -0.6908 24 6 1.2398 -12.1382 -1.2629 25 6 3.6396 -3.6726 0.0070 26 6 4.3225 -2.4779 -0.1250 27 6 3.6358 -1.2813 -0.1265 28 6 4.3863 0.0183 -0.2644 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 0.4774 -2.4856 0.2267 33 1 0.7910 -4.9488 0.8326 34 1 2.5552 -8.3594 -1.3545 35 1 -0.0434 -9.3753 -1.6196 36 1 0.5365 -9.8383 -0.0016 37 1 -0.3765 -11.5309 -4.6941 38 1 3.4734 -11.9101 -1.0850 39 1 2.5309 -11.2701 0.3654 40 1 0.3971 -12.2626 -0.5828 41 1 1.3388 -12.9028 -2.0335 42 1 4.1840 -4.6054 0.0119 43 1 5.3980 -2.4810 -0.2232 44 1 4.5600 0.4442 0.7238 45 1 5.3427 -0.1647 -0.7543 46 1 3.7992 0.7153 -0.8624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565725369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:19 Heat of formation + Delta-G solvation = -52.962865 kcal Electronic energy + Delta-G solvation = -28934.937868 eV Core-core repulsion = 24790.698741 eV Total energy + Delta-G solvation = -4144.239127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13009 -40.21941 -38.89090 -37.91154 -36.81275 -35.39783 -33.50246 -32.58029 -32.03379 -31.64709 -29.65724 -27.61376 -26.62945 -25.48001 -24.19093 -23.70457 -21.69301 -21.24489 -20.56533 -19.77669 -19.56949 -18.43193 -17.56573 -16.44058 -16.34597 -16.05569 -15.97088 -15.52522 -15.45129 -15.20800 -14.88668 -14.71313 -14.42799 -14.17389 -13.92637 -13.83852 -13.66951 -13.25632 -12.79715 -12.74991 -12.52847 -12.44752 -12.29168 -12.16368 -12.00291 -11.74533 -11.69500 -11.36843 -11.04480 -10.99129 -10.58790 -10.48578 -10.30337 -9.84570 -9.69173 -9.41877 -9.24767 -9.14836 -8.63000 -8.49087 -8.38215 -8.22824 -6.14477 -4.24972 0.37097 0.86214 1.61584 2.11054 2.41487 3.24945 3.30282 3.31109 3.33488 3.51648 3.70215 3.82376 4.31032 4.40526 4.63878 4.66285 4.72188 4.85818 4.97044 5.04332 5.09438 5.13003 5.18730 5.26988 5.40550 5.48513 5.51861 5.66442 5.73354 5.88288 5.89877 6.04183 6.09644 6.20470 6.28106 6.33216 6.38962 6.58786 6.61538 6.67932 6.84167 6.99357 7.02797 7.20659 7.24072 7.43428 7.62498 7.75265 7.96054 8.24220 8.36698 8.77314 9.43499 10.92406 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.002266 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.196730 B =12355.516432 C =12781.657747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.397 3.603 3 O -0.455 6.455 4 C -0.162 4.162 5 C -0.091 4.091 6 C 0.128 3.872 7 N -0.652 5.652 8 C 0.510 3.490 9 O -0.497 6.497 10 C 0.498 3.502 11 O -0.538 6.538 12 N -0.660 5.660 13 C 0.159 3.841 14 C 0.020 3.980 15 C -0.504 4.504 16 H 0.062 0.938 17 C 0.075 3.925 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.210 4.210 24 C -0.139 4.139 25 C -0.080 4.080 26 C -0.117 4.117 27 C -0.037 4.037 28 C -0.120 4.120 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.423 0.577 34 H 0.415 0.585 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.263 0.737 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.145 0.855 43 H 0.134 0.866 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 18.032 9.931 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.276 3.724 3 O -0.331 6.331 4 C -0.164 4.164 5 C -0.111 4.111 6 C 0.034 3.966 7 N -0.299 5.299 8 C 0.293 3.707 9 O -0.370 6.370 10 C 0.276 3.724 11 O -0.417 6.417 12 N -0.309 5.309 13 C 0.036 3.964 14 C 0.020 3.980 15 C -0.541 4.541 16 H 0.080 0.920 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.247 4.247 24 C -0.177 4.177 25 C -0.100 4.100 26 C -0.135 4.135 27 C -0.038 4.038 28 C -0.177 4.177 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.156 0.844 33 H 0.261 0.739 34 H 0.252 0.748 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.163 0.837 43 H 0.152 0.848 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.642 18.472 9.702 21.031 hybrid contribution 0.107 -0.201 -0.975 1.001 sum 2.748 18.272 8.727 20.434 Atomic orbital electron populations 1.22255 0.93710 1.05116 1.04827 1.22420 0.91593 0.87435 0.70949 1.90496 1.71543 1.34491 1.36583 1.20076 0.93899 0.94202 1.08206 1.21209 0.99995 0.90235 0.99688 1.17606 0.91463 0.84880 1.02676 1.43149 1.32636 1.07669 1.46490 1.20739 0.85612 0.85221 0.79168 1.90774 1.23103 1.83580 1.39525 1.19643 0.86419 0.84575 0.81718 1.90734 1.22324 1.84768 1.43847 1.45889 1.20877 1.10558 1.53620 1.21224 0.93739 0.82833 0.98591 1.19017 0.97086 0.88242 0.93694 1.20332 0.99756 1.45776 0.88250 0.92021 1.24983 0.94544 0.94376 0.99057 1.69972 1.10293 1.39926 1.30869 0.86680 0.78398 0.79203 0.83920 1.20165 1.21236 1.19992 1.23059 0.95665 1.09001 0.96999 1.22471 0.95073 0.98890 1.01287 1.21596 0.92543 0.99694 0.96141 1.20993 1.00399 0.90955 1.01199 1.20239 0.92462 0.96136 0.94996 1.21072 0.99364 0.94139 1.03076 0.88362 0.89334 0.89427 0.84359 0.73867 0.74770 0.90704 0.93232 0.92730 0.90200 0.91625 0.91697 0.89355 0.83689 0.84843 0.90687 0.92071 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 9.63 36.01 0.35 -0.83 16 2 C 0.40 3.63 7.16 -30.68 -0.22 3.41 16 3 O -0.45 -5.24 14.08 5.58 0.08 -5.17 16 4 C -0.16 -1.59 5.87 -105.09 -0.62 -2.21 16 5 C -0.09 -0.84 9.24 -38.88 -0.36 -1.20 16 6 C 0.13 1.43 6.26 -83.80 -0.52 0.91 16 7 N -0.65 -7.67 5.31 -10.33 -0.05 -7.73 16 8 C 0.51 7.68 7.72 -11.63 -0.09 7.59 16 9 O -0.50 -8.35 14.01 5.47 0.08 -8.27 16 10 C 0.50 8.63 7.88 -11.63 -0.09 8.54 16 11 O -0.54 -10.04 16.48 5.49 0.09 -9.95 16 12 N -0.66 -12.45 5.42 -60.77 -0.33 -12.78 16 13 C 0.16 3.34 5.55 -4.05 -0.02 3.32 16 14 C 0.02 0.46 1.56 -155.66 -0.24 0.22 16 15 C -0.50 -12.64 8.31 -34.44 -0.29 -12.93 16 16 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 17 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 18 N -0.87 -23.50 12.64 55.43 0.70 -22.80 16 19 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.21 -4.21 9.95 -26.69 -0.27 -4.48 16 24 C -0.14 -3.04 9.16 -26.70 -0.24 -3.29 16 25 C -0.08 -0.93 8.68 -39.27 -0.34 -1.27 16 26 C -0.12 -1.19 9.65 -39.68 -0.38 -1.57 16 27 C -0.04 -0.38 5.92 -104.11 -0.62 -1.00 16 28 C -0.12 -1.10 8.73 36.01 0.31 -0.78 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.42 6.73 -51.93 -0.35 0.07 16 32 H 0.14 0.90 6.53 -52.48 -0.34 0.56 16 33 H 0.42 4.15 8.32 -40.82 -0.34 3.81 16 34 H 0.42 7.79 7.63 -40.82 -0.31 7.48 16 35 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 38 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 42 H 0.15 1.81 6.32 -52.48 -0.33 1.48 16 43 H 0.13 1.09 8.05 -52.49 -0.42 0.66 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.47 8.04 -51.93 -0.42 0.05 16 46 H 0.09 0.92 5.84 -51.93 -0.30 0.61 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -29.57 392.30 -8.45 -38.02 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.17 Total: 11.13 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -3.74 Total: -3.72 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.32 Total: -43.31 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.25 Total: -23.39 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.57 -8.45 -38.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565725369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.944 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds