Wall clock time and date at job start Wed Apr 1 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00116 * 2 1 4 4 C 1.52993 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47315 * 65.00311 * 4 3 2 6 6 C 1.46500 * 119.99673 * 278.31349 * 5 4 3 7 7 C 1.50694 * 109.47130 * 269.99846 * 6 5 4 8 8 H 1.08005 * 120.00225 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00187 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99947 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00544 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46671 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47352 * 119.99435 * 11 9 7 14 14 H 1.48493 * 109.47034 * 240.00013 * 11 9 7 15 15 C 1.34773 * 120.00353 * 98.31455 * 5 4 3 16 16 O 1.21550 * 120.00505 * 186.58477 * 15 5 4 17 17 C 1.47882 * 119.99803 * 6.57590 * 15 5 4 18 18 C 1.40529 * 119.72597 * 330.16063 * 17 15 5 19 19 C 1.35860 * 120.72169 * 179.97438 * 18 17 15 20 20 C 1.40486 * 120.00007 * 0.03373 * 19 18 17 21 21 C 1.41008 * 121.04661 * 179.97438 * 20 19 18 22 22 C 1.50692 * 120.84622 * 359.95942 * 21 20 19 23 23 C 1.36283 * 118.30257 * 179.77181 * 21 20 19 24 24 C 1.40124 * 119.90066 * 0.46071 * 23 21 20 25 25 O 1.35564 * 119.22553 * 179.77989 * 24 23 21 26 26 N 1.31476 * 121.55168 * 359.50273 * 24 23 21 27 27 C 1.33853 * 121.29132 * 0.25721 * 26 24 23 28 28 C 1.38457 * 119.71923 * 150.13257 * 17 15 5 29 29 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46700 * 299.99633 * 1 2 3 31 31 H 1.09002 * 109.47427 * 59.99520 * 1 2 3 32 32 H 1.08997 * 109.46790 * 60.00307 * 3 2 1 33 33 H 1.09005 * 109.46917 * 300.00563 * 3 2 1 34 34 H 1.08997 * 109.47255 * 304.99928 * 4 3 2 35 35 H 1.09007 * 109.47205 * 184.99930 * 4 3 2 36 36 H 1.09000 * 109.47411 * 29.99895 * 6 5 4 37 37 H 1.09000 * 109.47011 * 149.99976 * 6 5 4 38 38 H 0.96998 * 120.00576 * 179.97438 * 10 9 7 39 39 H 1.07995 * 119.63817 * 359.96989 * 18 17 15 40 40 H 1.07994 * 119.99555 * 180.02562 * 19 18 17 41 41 H 1.08997 * 109.46889 * 90.00403 * 22 21 20 42 42 H 1.09005 * 109.47163 * 210.00115 * 22 21 20 43 43 H 1.09002 * 109.47577 * 330.00151 * 22 21 20 44 44 H 1.08000 * 120.04798 * 180.23964 * 23 21 20 45 45 H 0.96704 * 114.00046 * 269.72533 * 25 24 23 46 46 H 1.08001 * 120.23473 * 0.04608 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 3.9316 -0.8921 -1.4038 7 6 5.2389 -1.4845 -0.9446 8 1 6.0243 -0.8404 -0.5774 9 6 5.4329 -2.8487 -0.9942 10 7 4.4768 -3.6330 -1.4418 11 14 7.0532 -3.5831 -0.4244 12 1 7.9565 -2.4959 0.0309 13 1 6.8033 -4.5223 0.6984 14 1 7.6880 -4.3148 -1.5498 15 6 4.4212 1.3337 -2.2657 16 8 4.6730 0.8328 -3.3442 17 6 4.6035 2.7875 -2.0651 18 6 3.7883 3.4720 -1.1476 19 6 3.9387 4.8072 -0.9470 20 6 4.9169 5.5190 -1.6612 21 6 5.0916 6.9052 -1.4708 22 6 4.2318 7.6655 -0.4943 23 6 6.0606 7.5391 -2.1896 24 6 6.8449 6.8138 -3.0964 25 8 7.8018 7.4590 -3.8075 26 7 6.6781 5.5212 -3.2698 27 6 5.7461 4.8430 -2.5893 28 6 5.5763 3.4627 -2.7826 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9785 2.1765 0.0889 36 1 3.1182 -1.2955 -0.8007 37 1 3.7667 -1.1439 -2.4514 38 1 4.6133 -4.5926 -1.4771 39 1 3.0341 2.9306 -0.5959 40 1 3.3061 5.3214 -0.2387 41 1 4.7055 7.6604 0.4874 42 1 4.1157 8.6939 -0.8364 43 1 3.2522 7.1920 -0.4274 44 1 6.2213 8.5996 -2.0630 45 1 7.4939 7.8077 -4.6553 46 1 6.1997 2.9316 -3.4866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589052701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:23 Heat of formation + Delta-G solvation = -28.745286 kcal Electronic energy + Delta-G solvation = -30069.158182 eV Core-core repulsion = 25925.969208 eV Total energy + Delta-G solvation = -4143.188974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30910 -39.72804 -38.09913 -37.55554 -35.97868 -35.11501 -34.70321 -32.70439 -30.59449 -30.50822 -29.45110 -28.22557 -27.18829 -26.08013 -24.56025 -23.73390 -22.76587 -22.41496 -21.32124 -19.62458 -19.07407 -17.90560 -17.50085 -16.54988 -16.47393 -16.29440 -16.05587 -15.55639 -15.16445 -14.82341 -14.68441 -14.51070 -14.37946 -14.34258 -13.94507 -13.68313 -13.47234 -13.19966 -13.02754 -12.95970 -12.34917 -12.18353 -12.02107 -11.94535 -11.78656 -11.72167 -11.48468 -11.26830 -11.02680 -10.87517 -10.69544 -10.39566 -10.35175 -10.10611 -9.67959 -9.55906 -9.45266 -9.09570 -8.73926 -8.34428 -8.32794 -7.65340 -5.96194 -4.00271 0.13045 0.45793 1.73558 2.40471 3.23093 3.34872 3.42275 3.46280 3.57796 3.74840 3.95480 4.03044 4.19604 4.29549 4.47843 4.50921 4.66291 4.82276 4.88886 4.94886 5.03637 5.14567 5.21442 5.24851 5.32428 5.37572 5.39109 5.39949 5.48418 5.53694 5.53985 5.56702 5.72006 5.76811 5.86605 5.88101 6.11967 6.18330 6.22224 6.30524 6.57391 7.21711 7.24292 7.37324 7.53213 7.64547 7.70753 8.01542 8.32340 8.39936 8.89120 9.07506 9.63508 11.11857 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.003242 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.305105 B = 8634.233627 C =10375.122443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.038 3.962 4 C 0.078 3.922 5 N -0.577 5.577 6 C 0.245 3.755 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.542 3.458 16 O -0.530 6.530 17 C -0.093 4.093 18 C -0.122 4.122 19 C -0.104 4.104 20 C -0.100 4.100 21 C -0.013 4.013 22 C -0.120 4.120 23 C -0.189 4.189 24 C 0.339 3.661 25 O -0.483 6.483 26 N -0.490 5.490 27 C 0.148 3.852 28 C -0.038 4.038 29 H 0.085 0.915 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.261 0.739 39 H 0.159 0.841 40 H 0.136 0.864 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.142 0.858 45 H 0.402 0.598 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 24.838 4.094 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.040 4.040 4 C -0.046 4.046 5 N -0.307 5.307 6 C 0.127 3.873 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.329 3.671 16 O -0.407 6.407 17 C -0.098 4.098 18 C -0.139 4.139 19 C -0.122 4.122 20 C -0.102 4.102 21 C -0.020 4.020 22 C -0.176 4.176 23 C -0.210 4.210 24 C 0.145 3.855 25 O -0.290 6.290 26 N -0.209 5.209 27 C 0.028 3.972 28 C -0.057 4.057 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.176 0.824 40 H 0.154 0.846 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.159 0.841 45 H 0.260 0.740 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.350 23.515 3.373 24.351 hybrid contribution 0.082 0.349 0.454 0.579 sum -5.268 23.864 3.828 24.736 Atomic orbital electron populations 1.22731 0.81966 1.02805 0.99116 1.88159 1.18789 1.26181 1.95099 1.23136 0.95086 0.86126 0.99681 1.22362 0.91638 1.00712 0.89877 1.48082 1.60747 1.09909 1.11987 1.19461 0.97617 0.71141 0.99080 1.21504 1.00285 0.92001 1.42866 0.92542 1.24900 0.96786 0.96951 0.95336 1.69954 1.32450 1.04253 1.46447 0.86486 0.83800 0.79088 0.78298 1.19847 1.21006 1.20935 1.18109 0.79008 0.85034 0.84998 1.90770 1.50893 1.74143 1.24912 1.20313 0.96994 0.95344 0.97140 1.22053 1.00284 0.94681 0.96930 1.20878 0.97690 0.93920 0.99746 1.18786 0.98740 0.93772 0.98922 1.20075 0.94607 0.92431 0.94909 1.20898 0.99114 0.99797 0.97808 1.21689 0.97234 1.01824 1.00265 1.19283 0.87186 0.87183 0.91856 1.84748 1.35247 1.72795 1.36205 1.67481 1.18464 1.08807 1.26152 1.18358 0.91760 0.93661 0.93431 1.21197 0.96391 0.90904 0.97257 0.89599 0.94639 0.94511 0.92657 0.93220 0.88989 0.87380 0.92668 0.94013 0.92891 0.82362 0.84586 0.89871 0.90592 0.90353 0.84059 0.74020 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.36 -6.14 8.81 -35.23 -0.31 -6.45 16 3 C 0.04 0.51 5.05 37.15 0.19 0.70 16 4 C 0.08 1.25 5.34 -4.04 -0.02 1.23 16 5 N -0.58 -12.43 2.46 -176.17 -0.43 -12.86 16 6 C 0.25 6.56 5.04 -5.20 -0.03 6.53 16 7 C -0.53 -15.26 9.39 -34.44 -0.32 -15.59 16 8 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 11 Si 0.90 22.34 29.54 -169.99 -5.02 17.31 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 15 C 0.54 11.77 7.45 -12.31 -0.09 11.67 16 16 O -0.53 -13.77 16.22 5.32 0.09 -13.68 16 17 C -0.09 -1.57 5.58 -105.01 -0.59 -2.15 16 18 C -0.12 -1.54 7.37 -39.57 -0.29 -1.83 16 19 C -0.10 -1.08 9.28 -39.59 -0.37 -1.44 16 20 C -0.10 -1.20 5.75 -106.70 -0.61 -1.81 16 21 C -0.01 -0.12 5.92 -104.28 -0.62 -0.73 16 22 C -0.12 -0.64 9.58 36.00 0.34 -0.30 16 23 C -0.19 -1.75 9.64 -39.58 -0.38 -2.14 16 24 C 0.34 4.05 7.72 -17.00 -0.13 3.92 16 25 O -0.48 -4.79 13.55 -18.39 -0.25 -5.04 16 26 N -0.49 -7.38 10.36 -11.06 -0.11 -7.50 16 27 C 0.15 2.23 6.60 -84.87 -0.56 1.67 16 28 C -0.04 -0.64 9.55 -38.69 -0.37 -1.01 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.64 7.25 -51.93 -0.38 0.26 16 34 H 0.09 1.57 8.13 -51.93 -0.42 1.14 16 35 H 0.11 1.42 4.01 -52.28 -0.21 1.21 16 36 H 0.06 1.51 6.38 -51.93 -0.33 1.18 16 37 H 0.04 1.27 7.34 -51.93 -0.38 0.89 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.16 1.76 2.55 -52.49 -0.13 1.63 16 40 H 0.14 0.90 6.40 -52.49 -0.34 0.57 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.29 8.10 -51.93 -0.42 -0.13 16 43 H 0.08 0.35 6.49 -51.93 -0.34 0.01 16 44 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.40 1.85 9.06 45.56 0.41 2.26 16 46 H 0.15 2.70 7.89 -52.49 -0.41 2.29 16 LS Contribution 379.74 15.07 5.72 5.72 Total: -1.00 -38.13 379.74 -7.45 -45.58 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.03 Total: 1.24 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.83 Total: 1.93 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.19 Total: -46.61 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.47 Total: -25.17 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.13 -7.45 -45.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589052701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.831 kcal (2) G-P(sol) polarization free energy of solvation -38.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds