Wall clock time and date at job start Wed Apr 1 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34749 * 120.32761 * 2 1 4 4 C 1.46968 * 118.44392 * 180.02562 * 3 2 1 5 5 N 1.32023 * 120.51974 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99678 * 179.97438 * 5 4 3 7 7 C 1.53043 * 109.45668 * 240.02859 * 6 5 4 8 8 C 1.53192 * 109.30909 * 178.60445 * 7 6 5 9 9 N 1.46923 * 108.77136 * 54.65689 * 8 7 6 10 10 C 1.36930 * 120.63729 * 126.35990 * 9 8 7 11 11 H 1.08003 * 120.00275 * 207.70307 * 10 9 8 12 12 C 1.38811 * 119.99774 * 27.69704 * 10 9 8 13 13 N 1.31620 * 120.00004 * 17.35369 * 12 10 9 14 14 Si 1.86800 * 120.00153 * 197.35175 * 12 10 9 15 15 H 1.48505 * 109.47102 * 60.00170 * 14 12 10 16 16 H 1.48500 * 109.47387 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47378 * 300.00659 * 14 12 10 18 18 C 1.46928 * 118.73241 * 306.38133 * 9 8 7 19 19 C 1.53037 * 109.46108 * 119.97787 * 6 5 4 20 20 N 1.34855 * 118.95744 * 0.02562 * 4 3 2 21 21 C 1.31734 * 120.52595 * 0.02562 * 20 4 3 22 22 C 1.46729 * 119.15411 * 180.02562 * 21 20 4 23 23 C 1.36554 * 125.45301 * 359.97438 * 22 21 20 24 24 C 1.37603 * 113.28519 * 179.97438 * 23 22 21 25 25 C 1.33719 * 115.09248 * 0.02562 * 24 23 22 26 26 S 1.70617 * 110.96103 * 0.02562 * 25 24 23 27 27 N 1.36609 * 121.69401 * 0.27134 * 21 20 4 28 28 H 0.97001 * 119.47828 * 179.70305 * 27 21 20 29 29 H 1.09001 * 109.47193 * 90.00038 * 1 2 3 30 30 H 1.08998 * 109.47299 * 210.00056 * 1 2 3 31 31 H 1.09001 * 109.47483 * 330.00089 * 1 2 3 32 32 H 1.07996 * 120.77630 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.46582 * 359.97438 * 6 5 4 34 34 H 1.09007 * 109.49934 * 298.56673 * 7 6 5 35 35 H 1.08993 * 109.50068 * 58.66201 * 7 6 5 36 36 H 1.09000 * 109.59944 * 294.86267 * 8 7 6 37 37 H 1.09003 * 109.58610 * 174.43738 * 8 7 6 38 38 H 0.96998 * 119.99667 * 179.97438 * 13 12 10 39 39 H 1.08992 * 109.58910 * 293.81879 * 18 9 8 40 40 H 1.09005 * 109.70204 * 173.46322 * 18 9 8 41 41 H 1.09007 * 109.49616 * 301.33060 * 19 6 5 42 42 H 1.08994 * 109.50161 * 61.42612 * 19 6 5 43 43 H 1.08002 * 123.35722 * 359.97438 * 23 22 21 44 44 H 1.08006 * 122.45419 * 179.97438 * 24 23 22 45 45 H 1.07998 * 124.52396 * 180.26367 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.1631 0.0000 4 6 3.6562 1.1148 -0.0006 5 7 4.3637 2.2295 -0.0001 6 6 5.8274 2.1679 -0.0001 7 6 6.3670 2.8662 1.2503 8 6 7.8958 2.7696 1.2645 9 7 8.4155 3.3092 0.0007 10 6 9.3655 4.2953 0.0012 11 1 9.4272 4.9863 -0.8266 12 6 10.2493 4.4070 1.0658 13 7 10.4133 3.3970 1.8937 14 14 11.2058 5.9907 1.3235 15 1 10.2567 7.1149 1.5257 16 1 12.0750 5.8550 2.5198 17 1 12.0463 6.2613 0.1296 18 6 7.8959 2.7710 -1.2639 19 6 6.3671 2.8674 -1.2497 20 7 4.2700 -0.0860 -0.0016 21 6 3.5641 -1.1983 -0.0026 22 6 4.2631 -2.4884 -0.0031 23 6 5.6184 -2.6550 -0.0032 24 6 6.0041 -3.9759 -0.0032 25 6 5.0006 -4.8596 -0.0037 26 16 3.4895 -4.0674 -0.0049 27 7 2.1982 -1.1814 -0.0081 28 1 1.7105 -2.0199 -0.0131 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6655 2.1086 0.0004 33 1 6.1472 1.1259 -0.0001 34 1 6.0687 3.9146 1.2389 35 1 5.9637 2.3825 2.1398 36 1 8.1953 1.7265 1.3671 37 1 8.2908 3.3489 2.0991 38 1 11.0311 3.4750 2.6374 39 1 8.1954 1.7281 -1.3676 40 1 8.2908 3.3493 -2.0993 41 1 5.9639 2.3843 -2.1398 42 1 6.0688 3.9157 -1.2374 43 1 6.3179 -1.8321 -0.0032 44 1 7.0414 -4.2768 -0.0036 45 1 5.1293 -5.9319 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591146714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:26 Heat of formation + Delta-G solvation = 119.230850 kcal Electronic energy + Delta-G solvation = -27118.816018 eV Core-core repulsion = 23457.089393 eV Total energy + Delta-G solvation = -3661.726625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80279 -38.09957 -37.54104 -35.50489 -34.16486 -32.88513 -31.10331 -30.04663 -29.64996 -29.01665 -27.77083 -25.50730 -24.80679 -22.84000 -22.42187 -21.82832 -20.67105 -19.57663 -18.94882 -18.77442 -17.65786 -17.20777 -16.40599 -16.07655 -15.42215 -15.30192 -14.63377 -14.20922 -13.82853 -13.81367 -13.45892 -13.35917 -13.30232 -13.18784 -12.95951 -12.85767 -12.72201 -12.60914 -12.56122 -12.02253 -11.42603 -11.39566 -11.20587 -10.95344 -10.85884 -10.57843 -10.45110 -10.18565 -10.06600 -9.98212 -9.77877 -9.38126 -9.29568 -8.94696 -8.85436 -8.59020 -8.32269 -7.26519 -6.50951 -5.64292 -3.05212 0.05216 1.00815 1.38351 1.46914 1.56225 2.49100 2.50844 3.48019 3.52805 3.55474 3.93134 3.99831 4.14098 4.55184 4.62398 4.67562 4.86064 5.01324 5.04672 5.10530 5.25109 5.35658 5.46307 5.52132 5.68187 5.68997 5.80369 5.85905 5.95180 6.02856 6.09492 6.11565 6.38199 6.44282 6.51244 6.59859 6.77852 6.83998 6.88764 6.99189 7.06820 7.11655 7.24605 7.59601 7.82935 7.92969 8.08543 8.51279 8.60433 9.36468 10.00796 10.58966 11.44252 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.002791 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.689368 B =10028.091509 C =11603.535285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.122 3.878 3 C -0.185 4.185 4 C 0.327 3.673 5 N -0.517 5.517 6 C 0.083 3.917 7 C -0.121 4.121 8 C 0.176 3.824 9 N -0.592 5.592 10 C -0.248 4.248 11 H 0.064 0.936 12 C 0.000 4.000 13 N -0.904 5.904 14 Si 0.902 3.098 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.283 1.283 18 C 0.150 3.850 19 C -0.114 4.114 20 N -0.536 5.536 21 C 0.475 3.525 22 C -0.200 4.200 23 C -0.044 4.044 24 C -0.141 4.141 25 C -0.225 4.225 26 S 0.176 5.824 27 N -0.644 5.644 28 H 0.407 0.593 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.015 0.985 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.015 0.985 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.163 0.837 44 H 0.150 0.850 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.327 -19.967 -3.781 30.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.017 3.983 3 C -0.214 4.214 4 C 0.050 3.950 5 N -0.236 5.236 6 C -0.027 4.027 7 C -0.161 4.161 8 C 0.050 3.950 9 N -0.315 5.315 10 C -0.377 4.377 11 H 0.082 0.918 12 C -0.198 4.198 13 N -0.549 5.549 14 Si 0.732 3.268 15 H -0.211 1.211 16 H -0.217 1.217 17 H -0.210 1.210 18 C 0.023 3.977 19 C -0.153 4.153 20 N -0.261 5.261 21 C 0.201 3.799 22 C -0.319 4.319 23 C -0.079 4.079 24 C -0.173 4.173 25 C -0.363 4.363 26 S 0.442 5.558 27 N -0.266 5.266 28 H 0.242 0.758 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.167 0.833 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.033 0.967 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.180 0.820 44 H 0.168 0.832 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -22.769 -19.029 -3.644 29.897 hybrid contribution 1.439 0.087 0.226 1.459 sum -21.330 -18.942 -3.418 28.731 Atomic orbital electron populations 1.20882 0.87747 1.04412 1.03842 1.20209 0.94305 0.84799 0.98942 1.21995 0.92720 0.97259 1.09463 1.21071 0.91200 0.86776 0.95977 1.73425 1.09573 1.22994 1.17621 1.21466 0.85481 0.99362 0.96390 1.22177 0.99628 0.99681 0.94603 1.20754 0.87060 0.96968 0.90255 1.44047 1.44702 1.43180 0.99561 1.19167 1.07496 1.04946 1.06126 0.91823 1.25013 0.97391 0.97385 1.00053 1.70039 1.38091 1.28772 1.18026 0.86379 0.79476 0.83772 0.77216 1.21096 1.21715 1.20980 1.20874 0.90621 0.96230 0.90014 1.21979 0.97968 1.00187 0.95208 1.69510 1.35511 0.97342 1.23784 1.19548 0.79035 0.92027 0.89281 1.22659 0.97186 0.93417 1.18668 1.21013 0.93888 0.98047 0.94943 1.20173 1.01248 0.91801 1.04045 1.25208 0.96723 1.04891 1.09468 1.82722 1.08210 0.94873 1.69996 1.42187 1.05603 1.08728 1.70096 0.75776 0.89755 0.90844 0.89015 0.83332 0.92114 0.92529 0.94197 0.96659 0.89472 0.93749 0.96702 0.92870 0.94058 0.92168 0.81963 0.83206 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.14 36.00 0.37 -0.15 16 2 C 0.12 1.13 6.85 -81.58 -0.56 0.57 16 3 C -0.18 -2.41 9.92 -37.28 -0.37 -2.78 16 4 C 0.33 5.78 7.60 -156.04 -1.19 4.60 16 5 N -0.52 -10.68 10.22 -52.70 -0.54 -11.22 16 6 C 0.08 1.85 2.77 -67.89 -0.19 1.66 16 7 C -0.12 -2.87 5.68 -26.61 -0.15 -3.03 16 8 C 0.18 4.72 5.31 -3.71 -0.02 4.70 16 9 N -0.59 -16.41 2.99 -172.32 -0.52 -16.93 16 10 C -0.25 -7.30 9.59 -15.06 -0.14 -7.45 16 11 H 0.06 1.84 7.89 -52.48 -0.41 1.42 16 12 C 0.00 -0.01 4.91 -17.43 -0.09 -0.10 16 13 N -0.90 -27.65 11.19 55.49 0.62 -27.03 16 14 Si 0.90 22.84 29.59 -169.99 -5.03 17.81 16 15 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 18 C 0.15 3.59 6.51 -3.71 -0.02 3.57 16 19 C -0.11 -2.50 5.68 -26.61 -0.15 -2.66 16 20 N -0.54 -8.95 8.40 -9.21 -0.08 -9.03 16 21 C 0.47 5.94 7.65 -154.78 -1.18 4.76 16 22 C -0.20 -2.10 6.45 -36.76 -0.24 -2.34 16 23 C -0.04 -0.49 9.96 -40.42 -0.40 -0.89 16 24 C -0.14 -1.21 10.15 -41.40 -0.42 -1.63 16 25 C -0.22 -1.51 10.92 29.15 0.32 -1.19 16 26 S 0.18 1.14 22.07 -107.50 -2.37 -1.23 16 27 N -0.64 -5.84 5.34 -7.11 -0.04 -5.88 16 28 H 0.41 2.31 7.73 -40.82 -0.32 1.99 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.06 1.39 6.70 -51.93 -0.35 1.05 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 2.56 6.04 -51.93 -0.31 2.24 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 1.23 7.94 -51.93 -0.41 0.82 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.16 2.11 8.00 -52.49 -0.42 1.69 16 44 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -36.49 381.21 -13.07 -49.56 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.43 Total: 0.55 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -4.44 Total: -2.35 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -0.55 Total: -70.09 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.81 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.37 Total: -1.23 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.49 -13.07 -49.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591146714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.796 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds