Wall clock time and date at job start Wed Apr 1 2020 03:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34749 * 120.32761 * 2 1 4 4 C 1.46968 * 118.44392 * 180.02562 * 3 2 1 5 5 N 1.32023 * 120.51974 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99678 * 179.97438 * 5 4 3 7 7 C 1.53043 * 109.45668 * 240.02859 * 6 5 4 8 8 C 1.53192 * 109.30909 * 178.60445 * 7 6 5 9 9 N 1.46923 * 108.77136 * 54.65689 * 8 7 6 10 10 C 1.36930 * 120.63729 * 126.35990 * 9 8 7 11 11 H 1.08003 * 120.00275 * 207.70307 * 10 9 8 12 12 C 1.38811 * 119.99774 * 27.69704 * 10 9 8 13 13 N 1.31620 * 120.00004 * 17.35369 * 12 10 9 14 14 Si 1.86800 * 120.00153 * 197.35175 * 12 10 9 15 15 H 1.48505 * 109.47102 * 60.00170 * 14 12 10 16 16 H 1.48500 * 109.47387 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47378 * 300.00659 * 14 12 10 18 18 C 1.46928 * 118.73241 * 306.38133 * 9 8 7 19 19 C 1.53037 * 109.46108 * 119.97787 * 6 5 4 20 20 N 1.34855 * 118.95744 * 0.02562 * 4 3 2 21 21 C 1.31734 * 120.52595 * 0.02562 * 20 4 3 22 22 C 1.46729 * 119.15411 * 180.02562 * 21 20 4 23 23 C 1.36554 * 125.45301 * 359.97438 * 22 21 20 24 24 C 1.37603 * 113.28519 * 179.97438 * 23 22 21 25 25 C 1.33719 * 115.09248 * 0.02562 * 24 23 22 26 26 S 1.70617 * 110.96103 * 0.02562 * 25 24 23 27 27 N 1.36609 * 121.69401 * 0.27134 * 21 20 4 28 28 H 0.97001 * 119.47828 * 179.70305 * 27 21 20 29 29 H 1.09001 * 109.47193 * 90.00038 * 1 2 3 30 30 H 1.08998 * 109.47299 * 210.00056 * 1 2 3 31 31 H 1.09001 * 109.47483 * 330.00089 * 1 2 3 32 32 H 1.07996 * 120.77630 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.46582 * 359.97438 * 6 5 4 34 34 H 1.09007 * 109.49934 * 298.56673 * 7 6 5 35 35 H 1.08993 * 109.50068 * 58.66201 * 7 6 5 36 36 H 1.09000 * 109.59944 * 294.86267 * 8 7 6 37 37 H 1.09003 * 109.58610 * 174.43738 * 8 7 6 38 38 H 0.96998 * 119.99667 * 179.97438 * 13 12 10 39 39 H 1.08992 * 109.58910 * 293.81879 * 18 9 8 40 40 H 1.09005 * 109.70204 * 173.46322 * 18 9 8 41 41 H 1.09007 * 109.49616 * 301.33060 * 19 6 5 42 42 H 1.08994 * 109.50161 * 61.42612 * 19 6 5 43 43 H 1.08002 * 123.35722 * 359.97438 * 23 22 21 44 44 H 1.08006 * 122.45419 * 179.97438 * 24 23 22 45 45 H 1.07998 * 124.52396 * 180.26367 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.1631 0.0000 4 6 3.6562 1.1148 -0.0006 5 7 4.3637 2.2295 -0.0001 6 6 5.8274 2.1679 -0.0001 7 6 6.3670 2.8662 1.2503 8 6 7.8958 2.7696 1.2645 9 7 8.4155 3.3092 0.0007 10 6 9.3655 4.2953 0.0012 11 1 9.4272 4.9863 -0.8266 12 6 10.2493 4.4070 1.0658 13 7 10.4133 3.3970 1.8937 14 14 11.2058 5.9907 1.3235 15 1 10.2567 7.1149 1.5257 16 1 12.0750 5.8550 2.5198 17 1 12.0463 6.2613 0.1296 18 6 7.8959 2.7710 -1.2639 19 6 6.3671 2.8674 -1.2497 20 7 4.2700 -0.0860 -0.0016 21 6 3.5641 -1.1983 -0.0026 22 6 4.2631 -2.4884 -0.0031 23 6 5.6184 -2.6550 -0.0032 24 6 6.0041 -3.9759 -0.0032 25 6 5.0006 -4.8596 -0.0037 26 16 3.4895 -4.0674 -0.0049 27 7 2.1982 -1.1814 -0.0081 28 1 1.7105 -2.0199 -0.0131 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6655 2.1086 0.0004 33 1 6.1472 1.1259 -0.0001 34 1 6.0687 3.9146 1.2389 35 1 5.9637 2.3825 2.1398 36 1 8.1953 1.7265 1.3671 37 1 8.2908 3.3489 2.0991 38 1 11.0311 3.4750 2.6374 39 1 8.1954 1.7281 -1.3676 40 1 8.2908 3.3493 -2.0993 41 1 5.9639 2.3843 -2.1398 42 1 6.0688 3.9157 -1.2374 43 1 6.3179 -1.8321 -0.0032 44 1 7.0414 -4.2768 -0.0036 45 1 5.1293 -5.9319 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591146714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:25 Heat of formation + Delta-G solvation = 95.970437 kcal Electronic energy + Delta-G solvation = -27119.824665 eV Core-core repulsion = 23457.089393 eV Total energy + Delta-G solvation = -3662.735272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81530 -39.40297 -38.80443 -36.91778 -35.22314 -34.58891 -32.84082 -31.65498 -30.94250 -30.41276 -28.68632 -26.79455 -26.30462 -24.08063 -23.81349 -23.63041 -22.12290 -20.79281 -20.24844 -19.79641 -18.85496 -18.54213 -18.02455 -16.98035 -16.77671 -16.37149 -16.35429 -15.73732 -15.39556 -15.07716 -14.88492 -14.63644 -14.40244 -14.36935 -14.20733 -13.91892 -13.70547 -13.66227 -13.31903 -13.21838 -13.09946 -12.91611 -12.82771 -12.67638 -12.57524 -12.19966 -12.05934 -12.03080 -11.86826 -11.45756 -11.34971 -11.10673 -11.08533 -10.57186 -9.99002 -9.67589 -9.48697 -8.74502 -8.51453 -7.89277 -5.35741 -0.78024 0.32969 0.41478 0.65667 0.82509 1.44117 1.48736 1.55584 1.60109 1.71319 2.49824 2.78502 3.08504 3.20365 3.28274 3.61556 3.66153 4.03098 4.07418 4.16244 4.20615 4.23211 4.34774 4.44324 4.46111 4.52985 4.58988 4.64022 4.73800 4.76793 4.80302 4.92345 5.01534 5.06251 5.09784 5.15299 5.18406 5.22484 5.27863 5.29154 5.35906 5.45629 5.57965 5.60867 5.67118 6.11637 6.35364 7.01500 7.10004 7.20559 7.79867 8.35793 9.17971 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.002791 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.689368 B =10028.091509 C =11603.535285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.166 3.834 3 C -0.234 4.234 4 C 0.339 3.661 5 N -0.583 5.583 6 C 0.101 3.899 7 C -0.105 4.105 8 C 0.189 3.811 9 N -0.608 5.608 10 C -0.270 4.270 11 H 0.067 0.933 12 C -0.052 4.052 13 N -0.936 5.936 14 Si 0.975 3.025 15 H -0.280 1.280 16 H -0.290 1.290 17 H -0.271 1.271 18 C 0.149 3.851 19 C -0.099 4.099 20 N -0.594 5.594 21 C 0.486 3.514 22 C -0.243 4.243 23 C -0.060 4.060 24 C -0.165 4.165 25 C -0.209 4.209 26 S 0.271 5.729 27 N -0.623 5.623 28 H 0.429 0.571 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.157 0.843 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.039 0.961 36 H -0.007 1.007 37 H 0.058 0.942 38 H 0.251 0.749 39 H 0.011 0.989 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.126 0.874 44 H 0.158 0.842 45 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.968 -22.978 -4.399 34.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.058 3.942 3 C -0.264 4.264 4 C 0.064 3.936 5 N -0.305 5.305 6 C -0.010 4.010 7 C -0.145 4.145 8 C 0.063 3.937 9 N -0.332 5.332 10 C -0.399 4.399 11 H 0.085 0.915 12 C -0.247 4.247 13 N -0.582 5.582 14 Si 0.802 3.198 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.197 1.197 18 C 0.023 3.977 19 C -0.138 4.138 20 N -0.323 5.323 21 C 0.214 3.786 22 C -0.363 4.363 23 C -0.096 4.096 24 C -0.195 4.195 25 C -0.347 4.347 26 S 0.538 5.462 27 N -0.244 5.244 28 H 0.269 0.731 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.175 0.825 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.011 0.989 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.144 0.856 44 H 0.176 0.824 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -26.485 -22.136 -4.286 34.783 hybrid contribution 2.323 0.550 0.398 2.421 sum -24.162 -21.585 -3.889 32.632 Atomic orbital electron populations 1.21127 0.83174 1.06519 1.05858 1.20960 0.96609 0.83340 0.93249 1.22023 0.90538 0.99413 1.14383 1.21719 0.93143 0.86664 0.92092 1.73424 1.07215 1.24441 1.25465 1.21020 0.87966 0.97383 0.94640 1.21926 0.97161 0.99082 0.96311 1.20469 0.89043 0.94809 0.89381 1.44278 1.44853 1.43363 1.00708 1.19529 1.08011 1.05690 1.06712 0.91486 1.25893 0.98558 1.00653 0.99628 1.70209 1.38804 1.30755 1.18402 0.85241 0.77973 0.79315 0.77314 1.20575 1.21536 1.19658 1.20970 0.92089 0.95780 0.88822 1.21780 0.96129 0.99612 0.96325 1.69496 1.37196 0.98236 1.27338 1.19891 0.80267 0.91952 0.86492 1.22834 0.97627 0.95040 1.20756 1.20949 0.94132 0.98531 0.95976 1.20182 1.02536 0.90870 1.05933 1.25740 0.96587 1.06470 1.05903 1.82328 1.06257 0.90340 1.67285 1.42353 1.04756 1.10119 1.67212 0.73137 0.87462 0.87739 0.87933 0.82527 0.94047 0.93879 0.94200 0.98924 0.92397 0.93959 0.97130 0.92151 0.92695 0.93319 0.85619 0.82428 0.77673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.14 71.23 0.72 0.28 16 2 C 0.17 2.56 6.85 40.97 0.28 2.84 16 3 C -0.23 -6.00 9.92 23.76 0.24 -5.77 16 4 C 0.34 12.55 7.60 136.61 1.04 13.59 16 5 N -0.58 -25.73 10.22 -320.64 -3.28 -29.01 16 6 C 0.10 4.84 2.77 45.02 0.12 4.97 16 7 C -0.11 -5.41 5.68 30.67 0.17 -5.24 16 8 C 0.19 10.98 5.31 86.36 0.46 11.44 16 9 N -0.61 -35.76 2.99 -699.10 -2.09 -37.85 16 10 C -0.27 -16.53 9.59 84.03 0.81 -15.73 16 11 H 0.07 3.97 7.89 -2.91 -0.02 3.95 16 12 C -0.05 -3.16 4.91 84.86 0.42 -2.75 16 13 N -0.94 -59.75 11.19 21.65 0.24 -59.50 16 14 Si 0.97 48.20 29.59 68.60 2.03 50.23 16 15 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 16 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 17 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 18 C 0.15 7.60 6.51 86.36 0.56 8.16 16 19 C -0.10 -4.64 5.68 30.67 0.17 -4.46 16 20 N -0.59 -20.93 8.40 -183.05 -1.54 -22.47 16 21 C 0.49 11.89 7.65 136.07 1.04 12.93 16 22 C -0.24 -4.89 6.45 24.10 0.16 -4.73 16 23 C -0.06 -1.39 9.96 21.73 0.22 -1.18 16 24 C -0.16 -2.67 10.15 21.09 0.21 -2.45 16 25 C -0.21 -2.03 10.92 66.79 0.73 -1.30 16 26 S 0.27 2.38 22.07 -56.49 -1.25 1.13 16 27 N -0.62 -9.41 5.34 -176.42 -0.94 -10.36 16 28 H 0.43 2.76 7.73 -92.71 -0.72 2.04 16 29 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.10 0.36 8.08 -2.39 -0.02 0.34 16 32 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 33 H 0.04 2.09 6.70 -2.39 -0.02 2.08 16 34 H 0.04 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.06 3.65 6.04 -2.39 -0.01 3.64 16 38 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.06 2.91 7.94 -2.38 -0.02 2.89 16 41 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.13 3.79 8.00 -2.91 -0.02 3.77 16 44 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.21 0.57 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -87.75 381.21 0.82 -86.94 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.29 Total: 10.28 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 7.35 Total: 10.61 kcal Atomic # 7 Polarization: -151.58 SS G_CDS: -7.61 Total: -159.19 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.25 Total: 1.13 kcal Total: -87.75 0.82 -86.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591146714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.906 kcal (2) G-P(sol) polarization free energy of solvation -87.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds