Wall clock time and date at job start Wed Apr 1 2020 02:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34454 * 124.92359 * 2 1 4 4 C 1.34814 * 110.88721 * 180.26459 * 3 2 1 5 5 C 1.38939 * 133.49352 * 179.81450 * 4 3 2 6 6 C 1.37849 * 119.81847 * 180.02562 * 5 4 3 7 7 C 1.38733 * 120.68222 * 359.96136 * 6 5 4 8 8 C 1.36740 * 120.42289 * 359.97438 * 7 6 5 9 9 C 1.39408 * 119.71510 * 0.02562 * 8 7 6 10 10 C 1.34000 * 124.92363 * 179.85100 * 2 1 3 11 11 C 1.50699 * 126.90332 * 0.02562 * 10 2 1 12 12 N 1.46499 * 109.46700 * 269.67767 * 11 10 2 13 13 C 1.34784 * 119.99893 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99858 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99935 * 179.72905 * 13 12 11 16 16 C 1.47422 * 125.65011 * 359.68948 * 15 13 12 17 17 C 1.55129 * 104.72635 * 155.82003 * 16 15 13 18 18 C 1.55159 * 101.48546 * 37.29415 * 17 16 15 19 19 O 1.42895 * 110.71984 * 82.69439 * 18 17 16 20 20 C 1.50701 * 110.87411 * 205.90218 * 18 17 16 21 21 H 1.07997 * 120.00082 * 355.06288 * 20 18 17 22 22 C 1.37881 * 119.99742 * 175.06552 * 20 18 17 23 23 N 1.31514 * 119.99981 * 359.97438 * 22 20 18 24 24 Si 1.86796 * 119.99805 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47505 * 89.99412 * 24 22 20 26 26 H 1.48501 * 109.47348 * 210.00049 * 24 22 20 27 27 H 1.48507 * 109.47098 * 329.99590 * 24 22 20 28 28 C 1.47027 * 125.64934 * 180.02562 * 15 13 12 29 29 H 1.08996 * 109.47402 * 270.14441 * 1 2 3 30 30 H 1.09003 * 109.46739 * 30.14441 * 1 2 3 31 31 H 1.08995 * 109.46831 * 150.14319 * 1 2 3 32 32 H 1.08008 * 120.09160 * 0.02562 * 5 4 3 33 33 H 1.08002 * 119.65745 * 179.97438 * 6 5 4 34 34 H 1.08005 * 119.79247 * 180.02562 * 7 6 5 35 35 H 1.07998 * 120.14445 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.46743 * 149.68243 * 11 10 2 37 37 H 1.08994 * 109.47542 * 29.68102 * 11 10 2 38 38 H 0.97005 * 120.00261 * 0.02562 * 12 11 10 39 39 H 1.09006 * 110.36692 * 274.75237 * 16 15 13 40 40 H 1.09002 * 110.37144 * 37.07077 * 16 15 13 41 41 H 1.08997 * 111.19196 * 279.19339 * 17 16 15 42 42 H 1.08998 * 110.90808 * 155.27487 * 17 16 15 43 43 H 0.96706 * 114.00461 * 185.02315 * 19 18 17 44 44 H 0.97003 * 119.99793 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.87516 * 300.43881 * 28 15 13 46 46 H 1.09001 * 109.87636 * 61.44480 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1024 0.0000 4 6 3.5846 0.7754 -0.0058 5 6 4.7568 1.5214 -0.0115 6 6 5.9771 0.8803 -0.0173 7 6 6.0491 -0.5051 -0.0167 8 6 4.9074 -1.2577 -0.0098 9 6 3.6641 -0.6272 -0.0039 10 6 2.2741 -1.0987 0.0029 11 6 1.8041 -2.5305 0.0060 12 7 1.6587 -2.9936 1.3883 13 6 1.2472 -4.2526 1.6375 14 8 0.9961 -5.0039 0.7150 15 7 1.1186 -4.6803 2.9090 16 6 1.3993 -3.8824 4.1165 17 6 0.5441 -4.5400 5.2312 18 6 0.6616 -6.0431 4.8647 19 8 1.8753 -6.5953 5.3784 20 6 -0.5296 -6.8142 5.3721 21 1 -1.2743 -6.3202 5.9785 22 6 -0.6686 -8.1506 5.0623 23 7 0.2381 -8.7520 4.3235 24 14 -2.1455 -9.1062 5.6906 25 1 -3.2498 -9.0174 4.7018 26 1 -1.7681 -10.5293 5.8847 27 1 -2.5926 -8.5318 6.9850 28 6 0.6820 -6.0222 3.3217 29 1 -0.3634 0.0026 1.0276 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8912 -0.5116 32 1 4.7120 2.6005 -0.0115 33 1 6.8867 1.4627 -0.0222 34 1 7.0129 -0.9925 -0.0209 35 1 4.9686 -2.3360 -0.0098 36 1 2.5339 -3.1535 -0.5110 37 1 0.8427 -2.5985 -0.5030 38 1 1.8587 -2.3941 2.1243 39 1 2.4588 -3.9342 4.3676 40 1 1.0944 -2.8468 3.9662 41 1 -0.4922 -4.2057 5.1818 42 1 0.9699 -4.3433 6.2152 43 1 2.0343 -7.5114 5.1122 44 1 0.1400 -9.6921 4.1052 45 1 -0.3175 -6.2219 2.9352 46 1 1.3804 -6.7707 2.9475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592011667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:30 Heat of formation + Delta-G solvation = -46.748420 kcal Electronic energy + Delta-G solvation = -29838.094670 eV Core-core repulsion = 25694.125021 eV Total energy + Delta-G solvation = -4143.969649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.77858 -39.62454 -38.15590 -37.47636 -35.36885 -34.24381 -32.83439 -32.21284 -31.47557 -30.71690 -29.99507 -28.08808 -27.53775 -26.02926 -24.57738 -23.20869 -22.55899 -21.92209 -20.32902 -19.70074 -19.43101 -17.82628 -17.26924 -17.08904 -16.82766 -16.57661 -15.75930 -15.60995 -15.30707 -14.95474 -14.53889 -14.27624 -14.08701 -13.91967 -13.87729 -13.42334 -13.29368 -13.04108 -12.89180 -12.82186 -12.48845 -12.44490 -12.29157 -12.05905 -11.81787 -11.65090 -11.40682 -11.11231 -11.03771 -10.80600 -10.66264 -10.48798 -10.28974 -10.16281 -9.60957 -9.30512 -8.87430 -8.84508 -8.66955 -8.36557 -8.28327 -7.74656 -6.26814 -4.35362 0.63642 1.10283 1.90700 2.39783 3.21120 3.25578 3.29880 3.32654 3.51056 3.74026 4.10899 4.27764 4.31831 4.52632 4.61657 4.71591 4.80087 4.90802 5.00982 5.04068 5.15018 5.16376 5.35435 5.38355 5.39353 5.55707 5.62219 5.71108 5.78703 5.82048 5.98285 6.02382 6.03849 6.11110 6.18229 6.22001 6.40785 6.51782 6.72619 6.72876 6.89997 6.91567 7.00188 7.27617 7.33442 7.65453 7.74552 8.05217 8.53499 8.68452 9.12823 9.30873 9.39507 10.80977 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.002401 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.832175 B =11658.657223 C =12106.425692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.060 3.940 3 O -0.192 6.192 4 C 0.048 3.952 5 C -0.107 4.107 6 C -0.096 4.096 7 C -0.134 4.134 8 C -0.068 4.068 9 C -0.113 4.113 10 C -0.197 4.197 11 C 0.217 3.783 12 N -0.748 5.748 13 C 0.716 3.284 14 O -0.597 6.597 15 N -0.630 5.630 16 C 0.104 3.896 17 C -0.115 4.115 18 C 0.248 3.752 19 O -0.585 6.585 20 C -0.537 4.537 21 H 0.066 0.934 22 C 0.070 3.930 23 N -0.893 5.893 24 Si 0.903 3.097 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.123 3.877 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.393 0.607 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.382 0.618 44 H 0.270 0.730 45 H 0.064 0.936 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.239 20.037 -8.331 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.012 3.988 3 O -0.093 6.093 4 C 0.001 3.999 5 C -0.126 4.126 6 C -0.114 4.114 7 C -0.152 4.152 8 C -0.086 4.086 9 C -0.114 4.114 10 C -0.199 4.199 11 C 0.092 3.908 12 N -0.406 5.406 13 C 0.418 3.582 14 O -0.476 6.476 15 N -0.367 5.367 16 C -0.020 4.020 17 C -0.153 4.153 18 C 0.207 3.793 19 O -0.394 6.394 20 C -0.575 4.575 21 H 0.084 0.916 22 C -0.133 4.133 23 N -0.532 5.532 24 Si 0.731 3.269 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C 0.001 3.999 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.232 0.768 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.055 20.152 -8.916 23.138 hybrid contribution -0.574 -0.906 0.320 1.119 sum 6.481 19.246 -8.596 22.053 Atomic orbital electron populations 1.20544 0.84319 1.04709 1.04480 1.22274 0.93969 0.83177 0.99427 1.83965 1.15108 1.33845 1.76400 1.19570 0.83160 0.93458 1.03682 1.19922 0.88066 0.99678 1.04899 1.20926 0.96463 0.94676 0.99363 1.20808 0.98466 0.93842 1.02089 1.20375 0.90108 1.00416 0.97682 1.19764 0.93674 0.92801 1.05146 1.20854 0.90987 0.95640 1.12420 1.19176 1.00899 0.87392 0.83284 1.45205 1.74465 1.13081 1.07842 1.15501 0.78669 0.81494 0.82579 1.90890 1.58545 1.55225 1.42957 1.47966 1.69438 1.16508 1.02752 1.22272 0.99695 0.93864 0.86149 1.22755 0.99001 0.96575 0.97006 1.19510 0.84147 0.88809 0.86797 1.86105 1.42880 1.33229 1.77171 1.21481 1.07459 0.95029 1.33565 0.91580 1.25075 0.96626 0.97705 0.93896 1.69701 1.34636 1.12097 1.36728 0.86407 0.82279 0.78955 0.79285 1.20434 1.21002 1.19725 1.22863 0.99394 0.79513 0.98111 0.89132 0.90011 0.88476 0.85146 0.84817 0.85270 0.85337 0.90900 0.90756 0.77259 0.92036 0.92745 0.90489 0.90662 0.76768 0.92009 0.91770 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.18 36.01 0.37 -0.28 16 2 C 0.06 0.65 7.23 -35.80 -0.26 0.39 16 3 O -0.19 -2.23 10.58 3.88 0.04 -2.19 16 4 C 0.05 0.56 7.42 -38.47 -0.29 0.27 16 5 C -0.11 -0.98 10.07 -39.46 -0.40 -1.38 16 6 C -0.10 -0.77 10.01 -39.54 -0.40 -1.17 16 7 C -0.13 -1.19 9.98 -39.94 -0.40 -1.58 16 8 C -0.07 -0.74 10.05 -39.69 -0.40 -1.13 16 9 C -0.11 -1.36 6.38 -105.16 -0.67 -2.03 16 10 C -0.20 -2.34 5.72 -102.66 -0.59 -2.93 16 11 C 0.22 2.88 5.97 -5.19 -0.03 2.85 16 12 N -0.75 -11.36 5.51 -66.42 -0.37 -11.73 16 13 C 0.72 14.42 8.49 -86.91 -0.74 13.68 16 14 O -0.60 -14.31 16.67 5.29 0.09 -14.22 16 15 N -0.63 -13.02 3.32 -176.09 -0.59 -13.61 16 16 C 0.10 1.81 6.58 -2.41 -0.02 1.80 16 17 C -0.12 -2.27 6.24 -24.46 -0.15 -2.42 16 18 C 0.25 5.96 0.85 -89.93 -0.08 5.88 16 19 O -0.59 -14.63 13.07 -35.23 -0.46 -15.09 16 20 C -0.54 -13.97 8.13 -34.44 -0.28 -14.25 16 21 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 22 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 23 N -0.89 -23.82 10.96 55.43 0.61 -23.22 16 24 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.12 3.00 5.23 -3.06 -0.02 2.99 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.71 7.06 -51.93 -0.37 0.35 16 32 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.96 7.07 -51.93 -0.37 0.60 16 38 H 0.39 5.33 6.94 -40.82 -0.28 5.05 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.77 7.28 -51.93 -0.38 0.39 16 41 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.38 9.80 7.45 45.56 0.34 10.14 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.06 1.71 7.81 -51.93 -0.41 1.31 16 46 H 0.06 1.68 7.92 -51.93 -0.41 1.27 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -31.45 383.41 -9.99 -41.44 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -5.64 Total: 15.00 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -4.43 Total: 2.41 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.34 Total: -48.56 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.33 Total: -31.50 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.45 -9.99 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592011667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.313 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds