Wall clock time and date at job start Wed Apr 1 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38301 * 119.88731 * 2 1 4 4 C 1.38240 * 119.83710 * 180.02562 * 3 2 1 5 5 C 1.38158 * 120.15287 * 0.02562 * 4 3 2 6 6 C 1.38618 * 120.47364 * 0.02562 * 5 4 3 7 7 C 1.37825 * 119.88078 * 180.02562 * 2 1 3 8 8 N 1.39625 * 111.64045 * 180.02562 * 6 5 4 9 9 C 1.34782 * 124.95826 * 179.97438 * 8 6 5 10 10 O 1.21375 * 119.99689 * 359.95031 * 9 8 6 11 11 C 1.49349 * 119.99750 * 179.97438 * 9 8 6 12 12 O 1.21353 * 120.00381 * 0.02562 * 11 9 8 13 13 N 1.34782 * 119.99751 * 179.97438 * 11 9 8 14 14 C 1.47020 * 125.64689 * 359.69818 * 13 11 9 15 15 C 1.54337 * 107.26594 * 178.84324 * 14 13 11 16 16 C 1.55156 * 103.01734 * 338.14483 * 15 14 13 17 17 O 1.42909 * 111.00171 * 277.22475 * 16 15 14 18 18 C 1.50704 * 111.03722 * 153.39772 * 16 15 14 19 19 H 1.07999 * 119.99829 * 6.32126 * 18 16 15 20 20 C 1.37881 * 119.99740 * 186.32897 * 18 16 15 21 21 N 1.31514 * 120.00188 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99622 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47358 * 59.99867 * 22 20 18 24 24 H 1.48497 * 109.47214 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47519 * 300.00075 * 22 20 18 26 26 C 1.47423 * 125.64639 * 179.97438 * 13 11 9 27 27 C 1.46535 * 110.08058 * 359.96339 * 8 6 5 28 28 C 1.51222 * 130.98632 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47274 * 269.97758 * 1 2 3 30 30 H 1.09004 * 109.47015 * 29.97885 * 1 2 3 31 31 H 1.08996 * 109.47488 * 149.97187 * 1 2 3 32 32 H 1.07998 * 120.08547 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.92424 * 180.02562 * 4 3 2 34 34 H 1.08002 * 119.86415 * 359.71967 * 7 2 1 35 35 H 1.09002 * 109.88429 * 298.38959 * 14 13 11 36 36 H 1.08998 * 109.88655 * 59.55621 * 14 13 11 37 37 H 1.08997 * 110.85054 * 219.67332 * 15 14 13 38 38 H 1.09003 * 110.51152 * 96.44769 * 15 14 13 39 39 H 0.96701 * 113.99817 * 173.64751 * 17 16 15 40 40 H 0.97000 * 119.99759 * 179.97438 * 21 20 18 41 41 H 1.08992 * 110.36996 * 322.93623 * 26 13 11 42 42 H 1.09000 * 110.36753 * 85.14842 * 26 13 11 43 43 H 1.08992 * 110.30336 * 241.09007 * 27 8 6 44 44 H 1.09003 * 110.29291 * 118.95436 * 27 8 6 45 45 H 1.09000 * 110.41841 * 298.76230 * 28 5 4 46 46 H 1.08998 * 110.42414 * 61.23564 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1991 0.0000 4 6 3.5785 1.1979 -0.0005 5 6 4.2715 0.0026 -0.0016 6 6 3.5905 -1.2048 -0.0027 7 6 2.1936 -1.1950 -0.0005 8 7 4.4680 -2.2908 -0.0031 9 6 4.0941 -3.5857 -0.0036 10 8 2.9158 -3.8771 -0.0029 11 6 5.1296 -4.6619 -0.0046 12 8 6.3076 -4.3706 -0.0044 13 7 4.7557 -5.9569 -0.0046 14 6 3.3702 -6.4486 0.0026 15 6 3.4312 -7.9904 -0.0301 16 6 4.8398 -8.2721 -0.6164 17 8 4.8255 -8.1943 -2.0433 18 6 5.3595 -9.6099 -0.1567 19 1 4.7217 -10.2707 0.4116 20 6 6.6494 -9.9900 -0.4614 21 7 7.4260 -9.1855 -1.1536 22 14 7.2939 -11.6479 0.1092 23 1 6.4554 -12.7299 -0.4668 24 1 8.6979 -11.8159 -0.3443 25 1 7.2404 -11.7164 1.5916 26 6 5.6683 -7.1146 -0.0060 27 6 5.8547 -1.8173 -0.0031 28 6 5.7565 -0.2829 -0.0019 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6557 2.1341 -0.0004 33 1 4.1181 2.1334 -0.0001 34 1 1.6495 -2.1279 0.0036 35 1 2.8630 -6.1148 0.9079 36 1 2.8420 -6.0817 -0.8774 37 1 2.6550 -8.3957 -0.6792 38 1 3.3444 -8.3976 0.9774 39 1 5.6999 -8.2667 -2.4499 40 1 8.3335 -9.4528 -1.3676 41 1 6.5428 -6.9076 -0.6227 42 1 5.9722 -7.3594 1.0118 43 1 6.3722 -2.1624 -0.8981 44 1 6.3725 -2.1637 0.8913 45 1 6.2227 0.1288 -0.8970 46 1 6.2228 0.1272 0.8939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592301530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:14 Heat of formation + Delta-G solvation = -93.515591 kcal Electronic energy + Delta-G solvation = -30395.971270 eV Core-core repulsion = 26249.973645 eV Total energy + Delta-G solvation = -4145.997625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60043 -41.15440 -39.67938 -38.99510 -37.86520 -36.14029 -34.26544 -33.90523 -32.03077 -31.69435 -31.13449 -29.75210 -27.81592 -27.29122 -26.09669 -24.38012 -23.77391 -22.90031 -21.63979 -21.48890 -20.34391 -19.16324 -18.50754 -18.34357 -17.82047 -17.17944 -17.01064 -16.65695 -16.53798 -16.34279 -16.20486 -15.45535 -15.35533 -14.95865 -14.73898 -14.72359 -14.68822 -14.52209 -14.05874 -13.60689 -13.56240 -13.49528 -13.37375 -13.16331 -12.95164 -12.92116 -12.83661 -12.77271 -12.58309 -12.39284 -12.34170 -12.26292 -12.15213 -11.86517 -11.25141 -11.17005 -10.78131 -10.61891 -10.37964 -9.75094 -9.63418 -8.88464 -8.27061 -6.44007 -0.20623 0.36276 0.64367 0.96816 1.44322 1.45297 1.53039 1.92877 2.13851 2.38233 2.75746 2.90842 2.99059 3.46383 3.56295 3.71558 3.94221 3.99996 4.06015 4.08823 4.10769 4.16667 4.24947 4.37736 4.52307 4.58811 4.61537 4.67360 4.76162 4.83395 4.85973 4.91573 4.94119 4.97832 5.00289 5.05858 5.14318 5.25920 5.28223 5.37938 5.39484 5.44688 5.65015 5.71897 5.91242 5.98427 6.03309 6.18078 6.38139 6.63699 6.72973 7.23814 7.32597 8.78535 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.002613 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.029993 B =10711.248294 C =11613.109759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 C -0.132 4.132 4 C -0.073 4.073 5 C -0.138 4.138 6 C 0.107 3.893 7 C -0.153 4.153 8 N -0.530 5.530 9 C 0.515 3.485 10 O -0.510 6.510 11 C 0.508 3.492 12 O -0.545 6.545 13 N -0.580 5.580 14 C 0.117 3.883 15 C -0.114 4.114 16 C 0.234 3.766 17 O -0.588 6.588 18 C -0.556 4.556 19 H 0.070 0.930 20 C 0.029 3.971 21 N -0.914 5.914 22 Si 0.966 3.034 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.269 1.269 26 C 0.108 3.892 27 C 0.102 3.898 28 C -0.077 4.077 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.375 0.625 40 H 0.271 0.729 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 21.850 3.512 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.072 4.072 3 C -0.151 4.151 4 C -0.091 4.091 5 C -0.141 4.141 6 C 0.013 3.987 7 C -0.173 4.173 8 N -0.254 5.254 9 C 0.300 3.700 10 O -0.386 6.386 11 C 0.291 3.709 12 O -0.425 6.425 13 N -0.312 5.312 14 C -0.005 4.005 15 C -0.152 4.152 16 C 0.194 3.806 17 O -0.396 6.396 18 C -0.594 4.594 19 H 0.088 0.912 20 C -0.173 4.173 21 N -0.553 5.553 22 Si 0.791 3.209 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.014 4.014 27 C -0.019 4.019 28 C -0.114 4.114 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.223 0.777 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.132 0.868 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.206 21.822 3.540 23.581 hybrid contribution 1.363 -1.601 -0.005 2.103 sum -6.843 20.221 3.534 21.638 Atomic orbital electron populations 1.20839 0.89112 1.03644 1.03246 1.20002 0.97520 0.91933 0.97704 1.21357 0.93980 0.98120 1.01612 1.20771 0.94027 0.96691 0.97632 1.20385 0.96088 0.92059 1.05537 1.18720 0.91524 0.86672 1.01743 1.20902 0.91211 0.99673 1.05558 1.45637 1.09743 1.03180 1.66797 1.19994 0.88652 0.83102 0.78268 1.90683 1.18326 1.82200 1.47349 1.19661 0.88506 0.83043 0.79696 1.90697 1.18505 1.82100 1.51154 1.48675 1.10831 1.04465 1.67204 1.22187 0.81046 0.94910 1.02360 1.22718 0.97460 0.92949 1.02025 1.19856 0.91154 0.90991 0.78630 1.86133 1.35257 1.96312 1.21856 1.21707 0.98615 1.02672 1.36413 0.91157 1.25812 0.96724 1.00719 0.94012 1.69808 1.08815 1.37774 1.38868 0.85490 0.77072 0.79512 0.78855 1.19669 1.21020 1.19418 1.23106 0.93583 0.84157 1.00542 1.22475 0.79536 0.95547 1.04347 1.21261 0.91985 0.92019 1.06170 0.90141 0.89102 0.92181 0.82263 0.82044 0.86603 0.89866 0.91438 0.89565 0.88789 0.77659 0.91974 0.92000 0.92313 0.89839 0.89459 0.86770 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.00 71.24 0.71 -0.92 16 2 C -0.07 -1.43 5.87 -19.95 -0.12 -1.55 16 3 C -0.13 -2.01 9.71 22.29 0.22 -1.80 16 4 C -0.07 -1.12 10.03 22.25 0.22 -0.89 16 5 C -0.14 -2.88 6.23 -19.63 -0.12 -3.00 16 6 C 0.11 3.03 6.62 38.34 0.25 3.28 16 7 C -0.15 -4.22 9.10 22.52 0.20 -4.02 16 8 N -0.53 -16.85 3.12 -631.13 -1.97 -18.82 16 9 C 0.52 19.28 7.82 87.24 0.68 19.97 16 10 O -0.51 -19.76 12.28 -3.32 -0.04 -19.80 16 11 C 0.51 21.26 7.87 87.24 0.69 21.95 16 12 O -0.55 -23.99 14.31 -3.26 -0.05 -24.04 16 13 N -0.58 -25.16 3.33 -813.53 -2.71 -27.87 16 14 C 0.12 4.54 5.49 86.73 0.48 5.01 16 15 C -0.11 -4.58 6.13 31.79 0.19 -4.38 16 16 C 0.23 11.39 0.87 -10.16 -0.01 11.38 16 17 O -0.59 -30.44 13.16 -148.98 -1.96 -32.40 16 18 C -0.56 -28.60 8.27 25.60 0.21 -28.39 16 19 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 20 C 0.03 1.47 5.29 84.66 0.45 1.92 16 21 N -0.91 -48.62 10.69 21.45 0.23 -48.39 16 22 Si 0.97 41.08 29.54 68.60 2.03 43.11 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 C 0.11 5.23 5.38 86.85 0.47 5.70 16 27 C 0.10 2.62 5.66 86.62 0.49 3.11 16 28 C -0.08 -1.32 6.94 30.27 0.21 -1.11 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 32 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 34 H 0.12 3.67 6.27 -2.91 -0.02 3.65 16 35 H 0.08 2.92 7.71 -2.39 -0.02 2.91 16 36 H 0.07 2.66 7.57 -2.39 -0.02 2.64 16 37 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.09 3.46 8.03 -2.39 -0.02 3.45 16 39 H 0.37 19.99 7.56 -74.06 -0.56 19.43 16 40 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 41 H 0.06 3.35 7.33 -2.39 -0.02 3.34 16 42 H 0.06 2.91 8.03 -2.39 -0.02 2.89 16 43 H 0.08 2.28 7.63 -2.39 -0.02 2.27 16 44 H 0.09 2.31 7.63 -2.39 -0.02 2.29 16 45 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.12 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -64.58 373.74 1.22 -63.36 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: 0.46 Total: 38.58 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 5.23 Total: 26.27 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -4.45 Total: -95.08 kcal Atomic # 8 Polarization: -74.19 SS G_CDS: -2.05 Total: -76.24 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -64.58 1.22 -63.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592301530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.154 kcal (2) G-P(sol) polarization free energy of solvation -64.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds