Wall clock time and date at job start Wed Apr 1 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.57570 * 2 1 4 4 C 1.51174 * 110.52393 * 122.71755 * 2 1 3 5 5 C 1.37234 * 132.74401 * 298.90513 * 4 2 1 6 6 C 1.39861 * 119.79148 * 180.18429 * 5 4 2 7 7 C 1.47599 * 120.23716 * 179.76671 * 6 5 4 8 8 O 1.21585 * 120.00023 * 7.76265 * 7 6 5 9 9 N 1.34781 * 119.99611 * 187.76171 * 7 6 5 10 10 C 1.47014 * 125.64975 * 354.83748 * 9 7 6 11 11 C 1.54328 * 107.27265 * 178.97526 * 10 9 7 12 12 C 1.55162 * 102.93785 * 337.81216 * 11 10 9 13 13 O 1.42895 * 111.00270 * 277.38265 * 12 11 10 14 14 C 1.50705 * 111.00373 * 153.57616 * 12 11 10 15 15 H 1.08000 * 119.99661 * 3.17494 * 14 12 11 16 16 C 1.37870 * 120.00219 * 182.90207 * 14 12 11 17 17 N 1.31521 * 119.99845 * 0.27381 * 16 14 12 18 18 Si 1.86795 * 120.00272 * 180.27546 * 16 14 12 19 19 H 1.48495 * 109.47312 * 89.99831 * 18 16 14 20 20 H 1.48506 * 109.47214 * 210.00246 * 18 16 14 21 21 H 1.48502 * 109.47239 * 329.99743 * 18 16 14 22 22 C 1.47469 * 125.62545 * 174.84127 * 9 7 6 23 23 C 1.39762 * 119.52108 * 359.48916 * 6 5 4 24 24 C 1.37473 * 120.23335 * 0.27759 * 23 6 5 25 25 C 1.39200 * 106.28638 * 118.62819 * 4 2 1 26 26 N 1.39093 * 110.21004 * 359.97438 * 25 4 2 27 27 C 1.34332 * 112.37907 * 0.02562 * 26 25 4 28 28 O 1.21279 * 126.43231 * 180.02562 * 27 26 25 29 29 H 1.08998 * 109.46982 * 297.28288 * 1 2 3 30 30 H 1.09000 * 109.47112 * 57.28565 * 1 2 3 31 31 H 1.09006 * 109.46708 * 177.28314 * 1 2 3 32 32 H 1.09004 * 109.46753 * 182.71307 * 3 2 1 33 33 H 1.08998 * 109.47232 * 302.71496 * 3 2 1 34 34 H 1.08995 * 109.47150 * 62.71809 * 3 2 1 35 35 H 1.07991 * 120.10857 * 359.94862 * 5 4 2 36 36 H 1.08999 * 109.88161 * 59.56355 * 10 9 7 37 37 H 1.08997 * 109.88544 * 298.39502 * 10 9 7 38 38 H 1.09000 * 110.72349 * 219.44542 * 11 10 9 39 39 H 1.09004 * 110.87321 * 96.23973 * 11 10 9 40 40 H 0.96701 * 114.00567 * 176.82274 * 13 12 11 41 41 H 0.97000 * 119.99772 * 180.02562 * 17 16 14 42 42 H 1.09001 * 110.34908 * 85.24826 * 22 9 7 43 43 H 1.08998 * 110.40606 * 322.91603 * 22 9 7 44 44 H 1.08003 * 119.88688 * 180.25407 * 23 6 5 45 45 H 1.07999 * 119.84383 * 179.97438 * 24 23 6 46 46 H 0.97005 * 123.80876 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0678 1.4324 0.0000 4 6 2.0601 -0.7652 1.1912 5 6 1.9304 -0.5867 2.5457 6 6 2.5534 -1.4766 3.4266 7 6 2.4247 -1.2909 4.8852 8 8 1.6642 -0.4511 5.3264 9 7 3.1502 -2.0524 5.7280 10 6 4.0219 -3.1702 5.3380 11 6 4.6633 -3.7229 6.6283 12 6 4.5562 -2.5259 7.6097 13 8 5.6280 -1.6022 7.4099 14 6 4.5164 -3.0014 9.0393 15 1 4.6134 -4.0539 9.2611 16 6 4.3618 -2.0923 10.0641 17 7 4.2437 -0.8105 9.7940 18 14 4.3202 -2.6808 11.8365 19 1 5.6992 -2.6917 12.3870 20 1 3.4726 -1.7656 12.6422 21 1 3.7553 -4.0532 11.8892 22 6 3.2007 -1.9019 7.1942 23 6 3.2938 -2.5463 2.9158 24 6 3.4135 -2.7191 1.5573 25 6 2.7965 -1.8282 0.6760 26 7 2.7752 -1.7984 -0.7144 27 6 2.0606 -0.7665 -1.1930 28 8 1.8746 -0.4994 -2.3613 29 1 -0.3633 0.4711 0.9133 30 1 -0.3633 0.5554 -0.8647 31 1 -0.3633 -1.0266 -0.0487 32 1 3.1565 1.4117 -0.0486 33 1 1.6755 1.9678 -0.8646 34 1 1.7545 1.9381 0.9133 35 1 1.3523 0.2404 2.9302 36 1 4.7986 -2.8156 4.6605 37 1 3.4322 -3.9488 4.8542 38 1 5.7063 -3.9891 6.4570 39 1 4.1045 -4.5803 7.0034 40 1 5.5768 -0.8136 7.9672 41 1 4.1353 -0.1709 10.5151 42 1 2.3760 -2.4420 7.6592 43 1 3.1680 -0.8478 7.4694 44 1 3.7739 -3.2394 3.5908 45 1 3.9875 -3.5476 1.1694 46 1 3.2255 -2.4493 -1.2752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:19 Heat of formation + Delta-G solvation = -62.026166 kcal Electronic energy + Delta-G solvation = -30312.271353 eV Core-core repulsion = 26167.639211 eV Total energy + Delta-G solvation = -4144.632141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07482 -39.91157 -38.33659 -37.21844 -35.82132 -34.97945 -34.38880 -32.23702 -30.60201 -30.50780 -29.58602 -27.80538 -27.69026 -25.48879 -25.20471 -23.87017 -22.49430 -21.55174 -20.18645 -19.73024 -19.20862 -17.99463 -17.71355 -17.17613 -16.10415 -15.91821 -15.77264 -15.29342 -15.14632 -14.88111 -14.61885 -14.25725 -14.14514 -14.04267 -13.59141 -13.43436 -13.23892 -13.11552 -12.92158 -12.79328 -12.63222 -12.39039 -12.28881 -11.91376 -11.66192 -11.61190 -11.40950 -11.09428 -11.00381 -10.96143 -10.72531 -10.53322 -10.51339 -10.28099 -10.22222 -9.48123 -9.42325 -9.12553 -8.73382 -8.44996 -8.28455 -7.85701 -6.33306 -4.42991 0.65004 1.14967 2.07092 2.64679 3.07303 3.17558 3.25818 3.27637 3.45417 3.78445 3.88911 4.01323 4.22733 4.51033 4.63092 4.70893 4.77521 4.93760 4.95953 5.14905 5.20766 5.29742 5.33674 5.42284 5.45088 5.46052 5.47796 5.66224 5.75411 5.78991 5.83887 5.86622 5.88875 5.96411 6.12665 6.24848 6.31611 6.40064 6.45012 6.63744 6.70958 6.77558 6.90993 7.18893 7.28209 7.61989 7.69270 7.94539 8.11614 8.59462 8.65295 9.25931 9.35610 10.73976 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.002467 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.650507 B =11345.571961 C =11882.994409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.052 4.052 3 C -0.127 4.127 4 C -0.146 4.146 5 C -0.005 4.005 6 C -0.138 4.138 7 C 0.565 3.435 8 O -0.548 6.548 9 N -0.601 5.601 10 C 0.093 3.907 11 C -0.121 4.121 12 C 0.249 3.751 13 O -0.583 6.583 14 C -0.539 4.539 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.893 5.893 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.095 3.905 23 C -0.088 4.088 24 C -0.145 4.145 25 C 0.156 3.844 26 N -0.658 5.658 27 C 0.537 3.463 28 O -0.499 6.499 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.384 0.616 41 H 0.271 0.729 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.172 0.828 45 H 0.131 0.869 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 -2.550 -17.325 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.055 4.055 3 C -0.185 4.185 4 C -0.148 4.148 5 C -0.025 4.025 6 C -0.143 4.143 7 C 0.354 3.646 8 O -0.428 6.428 9 N -0.333 5.333 10 C -0.030 4.030 11 C -0.159 4.159 12 C 0.208 3.792 13 O -0.393 6.393 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.532 5.532 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.026 4.026 23 C -0.106 4.106 24 C -0.166 4.166 25 C 0.059 3.941 26 N -0.300 5.300 27 C 0.324 3.676 28 O -0.373 6.373 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.158 0.842 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.235 0.765 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.189 0.811 45 H 0.149 0.851 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.227 -2.072 -18.147 18.547 hybrid contribution 0.111 -0.300 1.064 1.111 sum -3.116 -2.373 -17.083 17.526 Atomic orbital electron populations 1.21675 0.90173 1.02966 1.03631 1.20115 0.98401 0.96787 0.90209 1.21676 1.01379 0.91799 1.03631 1.19617 1.03494 0.97921 0.93818 1.20263 0.95015 0.97604 0.89594 1.19935 1.02547 0.98108 0.93668 1.17699 0.80537 0.81260 0.85103 1.90757 1.38169 1.35630 1.78244 1.48621 1.43539 1.31543 1.09551 1.22468 0.93137 0.88642 0.98763 1.22705 1.00617 0.98918 0.93664 1.19606 0.82366 0.85038 0.92144 1.86078 1.49607 1.36189 1.67403 1.21466 1.51618 0.94390 0.90207 0.91460 1.25080 0.93280 0.94870 0.99993 1.69645 1.48842 1.01198 1.33523 0.86393 0.78165 0.78769 0.83522 1.20387 1.20995 1.19696 1.23342 1.00810 1.03500 0.74997 1.22656 0.95321 0.97332 0.95295 1.20352 1.03826 1.00323 0.92117 1.18371 0.97006 0.96207 0.82550 1.43640 1.50986 1.29595 1.05812 1.20611 0.77001 0.80208 0.89733 1.90784 1.58749 1.69699 1.18067 0.90471 0.91068 0.92064 0.92004 0.91064 0.90464 0.84182 0.91019 0.91620 0.90482 0.90199 0.76467 0.91890 0.91900 0.89611 0.81107 0.85079 0.74893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.64 37.16 0.32 -0.81 16 2 C -0.05 -0.53 1.01 -156.24 -0.16 -0.68 16 3 C -0.13 -1.16 8.65 37.16 0.32 -0.84 16 4 C -0.15 -1.65 4.98 -104.40 -0.52 -2.17 16 5 C -0.01 -0.07 9.58 -39.34 -0.38 -0.45 16 6 C -0.14 -2.04 5.88 -104.90 -0.62 -2.66 16 7 C 0.56 10.78 7.80 -12.44 -0.10 10.68 16 8 O -0.55 -12.29 16.68 5.29 0.09 -12.21 16 9 N -0.60 -11.55 3.33 -175.17 -0.58 -12.14 16 10 C 0.09 1.43 4.87 -3.07 -0.01 1.42 16 11 C -0.12 -2.17 6.13 -24.89 -0.15 -2.33 16 12 C 0.25 5.67 0.88 -89.62 -0.08 5.59 16 13 O -0.58 -14.16 13.17 -35.23 -0.46 -14.62 16 14 C -0.54 -13.36 8.25 -34.44 -0.28 -13.64 16 15 H 0.07 1.63 7.78 -52.49 -0.41 1.22 16 16 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 17 N -0.89 -23.06 10.69 55.43 0.59 -22.46 16 18 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 C 0.09 2.15 5.50 -2.51 -0.01 2.14 16 23 C -0.09 -1.04 8.57 -39.29 -0.34 -1.38 16 24 C -0.15 -1.42 10.06 -39.32 -0.40 -1.81 16 25 C 0.16 1.63 7.11 -83.67 -0.59 1.03 16 26 N -0.66 -6.15 5.85 -9.67 -0.06 -6.21 16 27 C 0.54 6.04 7.36 -10.84 -0.08 5.96 16 28 O -0.50 -6.90 18.03 5.56 0.10 -6.80 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.14 1.85 7.68 -52.49 -0.40 1.45 16 36 H 0.07 1.02 6.68 -51.93 -0.35 0.67 16 37 H 0.07 0.81 6.79 -51.93 -0.35 0.46 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.34 8.02 -51.93 -0.42 0.93 16 40 H 0.38 9.72 7.24 45.56 0.33 10.05 16 41 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 42 H 0.06 1.48 8.03 -51.93 -0.42 1.06 16 43 H 0.09 2.22 7.53 -51.93 -0.39 1.83 16 44 H 0.17 1.87 2.77 -56.99 -0.16 1.71 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.41 2.84 8.96 -40.82 -0.37 2.48 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -30.35 374.02 -8.33 -38.67 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.45 Total: 13.69 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -3.17 Total: 1.74 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.05 Total: -40.81 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.28 Total: -33.63 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.35 -8.33 -38.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.356 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds