Wall clock time and date at job start Wed Apr 1 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.57570 * 2 1 4 4 C 1.51174 * 110.52393 * 122.71755 * 2 1 3 5 5 C 1.37234 * 132.74401 * 298.90513 * 4 2 1 6 6 C 1.39861 * 119.79148 * 180.18429 * 5 4 2 7 7 C 1.47599 * 120.23716 * 179.76671 * 6 5 4 8 8 O 1.21585 * 120.00023 * 7.76265 * 7 6 5 9 9 N 1.34781 * 119.99611 * 187.76171 * 7 6 5 10 10 C 1.47014 * 125.64975 * 354.83748 * 9 7 6 11 11 C 1.54328 * 107.27265 * 178.97526 * 10 9 7 12 12 C 1.55162 * 102.93785 * 337.81216 * 11 10 9 13 13 O 1.42895 * 111.00270 * 277.38265 * 12 11 10 14 14 C 1.50705 * 111.00373 * 153.57616 * 12 11 10 15 15 H 1.08000 * 119.99661 * 3.17494 * 14 12 11 16 16 C 1.37870 * 120.00219 * 182.90207 * 14 12 11 17 17 N 1.31521 * 119.99845 * 0.27381 * 16 14 12 18 18 Si 1.86795 * 120.00272 * 180.27546 * 16 14 12 19 19 H 1.48495 * 109.47312 * 89.99831 * 18 16 14 20 20 H 1.48506 * 109.47214 * 210.00246 * 18 16 14 21 21 H 1.48502 * 109.47239 * 329.99743 * 18 16 14 22 22 C 1.47469 * 125.62545 * 174.84127 * 9 7 6 23 23 C 1.39762 * 119.52108 * 359.48916 * 6 5 4 24 24 C 1.37473 * 120.23335 * 0.27759 * 23 6 5 25 25 C 1.39200 * 106.28638 * 118.62819 * 4 2 1 26 26 N 1.39093 * 110.21004 * 359.97438 * 25 4 2 27 27 C 1.34332 * 112.37907 * 0.02562 * 26 25 4 28 28 O 1.21279 * 126.43231 * 180.02562 * 27 26 25 29 29 H 1.08998 * 109.46982 * 297.28288 * 1 2 3 30 30 H 1.09000 * 109.47112 * 57.28565 * 1 2 3 31 31 H 1.09006 * 109.46708 * 177.28314 * 1 2 3 32 32 H 1.09004 * 109.46753 * 182.71307 * 3 2 1 33 33 H 1.08998 * 109.47232 * 302.71496 * 3 2 1 34 34 H 1.08995 * 109.47150 * 62.71809 * 3 2 1 35 35 H 1.07991 * 120.10857 * 359.94862 * 5 4 2 36 36 H 1.08999 * 109.88161 * 59.56355 * 10 9 7 37 37 H 1.08997 * 109.88544 * 298.39502 * 10 9 7 38 38 H 1.09000 * 110.72349 * 219.44542 * 11 10 9 39 39 H 1.09004 * 110.87321 * 96.23973 * 11 10 9 40 40 H 0.96701 * 114.00567 * 176.82274 * 13 12 11 41 41 H 0.97000 * 119.99772 * 180.02562 * 17 16 14 42 42 H 1.09001 * 110.34908 * 85.24826 * 22 9 7 43 43 H 1.08998 * 110.40606 * 322.91603 * 22 9 7 44 44 H 1.08003 * 119.88688 * 180.25407 * 23 6 5 45 45 H 1.07999 * 119.84383 * 179.97438 * 24 23 6 46 46 H 0.97005 * 123.80876 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0678 1.4324 0.0000 4 6 2.0601 -0.7652 1.1912 5 6 1.9304 -0.5867 2.5457 6 6 2.5534 -1.4766 3.4266 7 6 2.4247 -1.2909 4.8852 8 8 1.6642 -0.4511 5.3264 9 7 3.1502 -2.0524 5.7280 10 6 4.0219 -3.1702 5.3380 11 6 4.6633 -3.7229 6.6283 12 6 4.5562 -2.5259 7.6097 13 8 5.6280 -1.6022 7.4099 14 6 4.5164 -3.0014 9.0393 15 1 4.6134 -4.0539 9.2611 16 6 4.3618 -2.0923 10.0641 17 7 4.2437 -0.8105 9.7940 18 14 4.3202 -2.6808 11.8365 19 1 5.6992 -2.6917 12.3870 20 1 3.4726 -1.7656 12.6422 21 1 3.7553 -4.0532 11.8892 22 6 3.2007 -1.9019 7.1942 23 6 3.2938 -2.5463 2.9158 24 6 3.4135 -2.7191 1.5573 25 6 2.7965 -1.8282 0.6760 26 7 2.7752 -1.7984 -0.7144 27 6 2.0606 -0.7665 -1.1930 28 8 1.8746 -0.4994 -2.3613 29 1 -0.3633 0.4711 0.9133 30 1 -0.3633 0.5554 -0.8647 31 1 -0.3633 -1.0266 -0.0487 32 1 3.1565 1.4117 -0.0486 33 1 1.6755 1.9678 -0.8646 34 1 1.7545 1.9381 0.9133 35 1 1.3523 0.2404 2.9302 36 1 4.7986 -2.8156 4.6605 37 1 3.4322 -3.9488 4.8542 38 1 5.7063 -3.9891 6.4570 39 1 4.1045 -4.5803 7.0034 40 1 5.5768 -0.8136 7.9672 41 1 4.1353 -0.1709 10.5151 42 1 2.3760 -2.4420 7.6592 43 1 3.1680 -0.8478 7.4694 44 1 3.7739 -3.2394 3.5908 45 1 3.9875 -3.5476 1.1694 46 1 3.2255 -2.4493 -1.2752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:18 Heat of formation + Delta-G solvation = -83.627996 kcal Electronic energy + Delta-G solvation = -30313.208078 eV Core-core repulsion = 26167.639211 eV Total energy + Delta-G solvation = -4145.568867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.95286 -41.28736 -39.46613 -38.75721 -36.88708 -36.05594 -35.74611 -34.16561 -32.02044 -31.50556 -30.78975 -29.31259 -28.40913 -27.11005 -26.15102 -25.22272 -23.62339 -22.59357 -21.45749 -21.13000 -20.37784 -19.15455 -18.86956 -18.69722 -17.24511 -17.20382 -16.90599 -16.79901 -16.62328 -16.21398 -15.88508 -15.34491 -15.24680 -14.90594 -14.88123 -14.75026 -14.65959 -14.36391 -14.26172 -13.77653 -13.66245 -13.46923 -13.41269 -13.12334 -13.08820 -12.97083 -12.82970 -12.40089 -12.32640 -12.24872 -12.16819 -12.09124 -11.90666 -11.63186 -11.22996 -11.10754 -10.93569 -10.60942 -10.28382 -10.01490 -9.52820 -9.14279 -8.23630 -6.40023 -0.35033 0.26224 1.14127 1.43303 1.45975 1.54873 1.84063 1.87905 2.06954 2.40221 2.78165 2.90810 3.03113 3.13750 3.54908 3.69616 3.77442 3.86533 3.94379 4.05634 4.17266 4.22148 4.25265 4.34704 4.49830 4.56833 4.64887 4.66293 4.71278 4.73769 4.76271 4.93267 4.99298 5.04227 5.07260 5.11444 5.14726 5.15597 5.25819 5.31899 5.38949 5.46292 5.51210 5.66504 5.78731 5.83597 6.08107 6.62815 6.71462 6.81367 7.16628 7.31670 7.38515 8.81621 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.002467 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.650507 B =11345.571961 C =11882.994409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.054 4.054 3 C -0.127 4.127 4 C -0.148 4.148 5 C -0.011 4.011 6 C -0.161 4.161 7 C 0.558 3.442 8 O -0.598 6.598 9 N -0.606 5.606 10 C 0.092 3.908 11 C -0.116 4.116 12 C 0.232 3.768 13 O -0.588 6.588 14 C -0.553 4.553 15 H 0.071 0.929 16 C 0.025 3.975 17 N -0.917 5.917 18 Si 0.962 3.038 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.107 3.893 23 C -0.080 4.080 24 C -0.128 4.128 25 C 0.164 3.836 26 N -0.644 5.644 27 C 0.538 3.462 28 O -0.526 6.526 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.374 0.626 41 H 0.269 0.731 42 H 0.045 0.955 43 H 0.042 0.958 44 H 0.185 0.815 45 H 0.174 0.826 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 -4.985 -19.445 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.057 4.057 3 C -0.185 4.185 4 C -0.150 4.150 5 C -0.030 4.030 6 C -0.165 4.165 7 C 0.350 3.650 8 O -0.482 6.482 9 N -0.337 5.337 10 C -0.029 4.029 11 C -0.153 4.153 12 C 0.191 3.809 13 O -0.396 6.396 14 C -0.592 4.592 15 H 0.089 0.911 16 C -0.176 4.176 17 N -0.557 5.557 18 Si 0.788 3.212 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.016 4.016 23 C -0.098 4.098 24 C -0.148 4.148 25 C 0.066 3.934 26 N -0.287 5.287 27 C 0.326 3.674 28 O -0.402 6.402 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.224 0.776 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.202 0.798 45 H 0.191 0.809 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.325 -4.567 -20.298 20.935 hybrid contribution -0.168 0.470 1.652 1.726 sum -2.493 -4.098 -18.646 19.253 Atomic orbital electron populations 1.21689 0.89346 1.03114 1.04214 1.20188 0.99137 0.97079 0.89295 1.21691 1.01165 0.91384 1.04214 1.19613 1.03634 0.98587 0.93208 1.20137 0.95226 0.97361 0.90305 1.19621 1.05549 1.00615 0.90717 1.18449 0.79433 0.80197 0.86950 1.90715 1.40302 1.37678 1.79464 1.48644 1.44267 1.32816 1.07958 1.22779 0.93653 0.88399 0.98074 1.22723 1.02103 0.97148 0.93352 1.19867 0.81753 0.86390 0.92884 1.86068 1.50359 1.36043 1.67125 1.21840 1.51148 0.94588 0.91591 0.91078 1.25821 0.93204 0.95006 1.03557 1.69772 1.49681 1.02049 1.34191 0.85483 0.77988 0.78408 0.79321 1.20100 1.21440 1.18869 1.22867 1.00540 1.00412 0.77743 1.22712 0.94425 0.96233 0.96465 1.20673 1.02701 1.00635 0.90821 1.18520 0.96183 0.95744 0.82976 1.43514 1.50309 1.29365 1.05503 1.20690 0.76851 0.80471 0.89418 1.90778 1.59823 1.70463 1.19099 0.90028 0.90394 0.92146 0.92312 0.90346 0.90063 0.85395 0.88916 0.87235 0.89110 0.88975 0.77609 0.92199 0.93677 0.93948 0.79837 0.80910 0.73152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.64 71.98 0.62 -1.47 16 2 C -0.05 -1.00 1.01 -53.30 -0.05 -1.06 16 3 C -0.13 -2.17 8.65 71.98 0.62 -1.55 16 4 C -0.15 -3.07 4.98 -19.72 -0.10 -3.17 16 5 C -0.01 -0.28 9.58 22.43 0.21 -0.06 16 6 C -0.16 -4.57 5.88 -20.05 -0.12 -4.69 16 7 C 0.56 21.69 7.80 86.71 0.68 22.36 16 8 O -0.60 -28.39 16.68 -3.98 -0.07 -28.46 16 9 N -0.61 -23.29 3.33 -826.37 -2.75 -26.04 16 10 C 0.09 2.58 4.87 86.73 0.42 3.00 16 11 C -0.12 -3.89 6.13 31.79 0.19 -3.70 16 12 C 0.23 10.60 0.88 -10.15 -0.01 10.59 16 13 O -0.59 -29.00 13.17 -148.98 -1.96 -30.96 16 14 C -0.55 -27.63 8.25 25.60 0.21 -27.42 16 15 H 0.07 3.41 7.78 -2.91 -0.02 3.38 16 16 C 0.02 1.26 5.29 84.65 0.45 1.71 16 17 N -0.92 -49.21 10.69 21.45 0.23 -48.98 16 18 Si 0.96 40.87 29.54 68.60 2.03 42.89 16 19 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 C 0.11 5.08 5.50 86.84 0.48 5.55 16 23 C -0.08 -1.61 8.57 22.46 0.19 -1.42 16 24 C -0.13 -1.87 10.06 22.44 0.23 -1.65 16 25 C 0.16 2.84 7.11 38.57 0.27 3.11 16 26 N -0.64 -9.86 5.85 -303.13 -1.77 -11.63 16 27 C 0.54 10.88 7.36 87.95 0.65 11.53 16 28 O -0.53 -13.61 18.03 -3.03 -0.05 -13.66 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.13 3.54 7.68 -2.92 -0.02 3.52 16 36 H 0.09 2.26 6.68 -2.39 -0.02 2.24 16 37 H 0.11 2.18 6.79 -2.39 -0.02 2.16 16 38 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.09 2.85 8.02 -2.38 -0.02 2.84 16 40 H 0.37 19.77 7.24 -74.06 -0.54 19.23 16 41 H 0.27 13.91 8.31 -92.71 -0.77 13.13 16 42 H 0.04 2.23 8.03 -2.39 -0.02 2.21 16 43 H 0.04 2.34 7.53 -2.39 -0.02 2.32 16 44 H 0.19 3.13 2.77 -7.14 -0.02 3.11 16 45 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 46 H 0.43 4.19 8.96 -92.70 -0.83 3.36 16 Total: -1.00 -69.59 374.02 0.27 -69.32 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.33 Total: 35.84 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 4.95 Total: 11.67 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -4.29 Total: -86.65 kcal Atomic # 8 Polarization: -71.00 SS G_CDS: -2.08 Total: -73.08 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -69.59 0.27 -69.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.305 kcal (2) G-P(sol) polarization free energy of solvation -69.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds