Wall clock time and date at job start Wed Apr 1 2020 02:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48491 * 109.47193 * 269.82701 * 3 2 1 5 5 H 1.48499 * 109.47097 * 29.82904 * 3 2 1 6 6 H 1.48506 * 109.47116 * 149.82772 * 3 2 1 7 7 C 1.37882 * 119.99812 * 180.27411 * 2 1 3 8 8 H 1.08001 * 120.00517 * 1.69893 * 7 2 1 9 9 C 1.50698 * 119.99733 * 181.69397 * 7 2 1 10 10 H 1.09001 * 109.50556 * 332.39269 * 9 7 2 11 11 C 1.53116 * 109.50454 * 92.47434 * 9 7 2 12 12 C 1.53128 * 109.16140 * 177.55548 * 11 9 7 13 13 C 1.53035 * 109.30938 * 302.40424 * 12 11 9 14 14 N 1.46851 * 109.52425 * 59.15720 * 13 12 11 15 15 C 1.46900 * 111.00083 * 174.16214 * 14 13 12 16 16 H 1.09000 * 110.54151 * 180.60463 * 15 14 13 17 17 C 1.54227 * 110.60443 * 303.61885 * 15 14 13 18 18 C 1.51316 * 103.55638 * 118.51792 * 17 15 14 19 19 O 1.21226 * 125.39995 * 179.97438 * 18 17 15 20 20 N 1.33882 * 109.20225 * 359.97438 * 18 17 15 21 21 C 1.40203 * 122.75844 * 179.97438 * 20 18 17 22 22 C 1.38883 * 120.03490 * 88.57060 * 21 20 18 23 23 C 1.38127 * 120.04428 * 179.76845 * 22 21 20 24 24 C 1.38206 * 120.12167 * 0.50646 * 23 22 21 25 25 C 1.38760 * 120.07408 * 359.74386 * 24 23 22 26 26 O 1.35900 * 120.02078 * 180.02562 * 25 24 23 27 27 C 1.38637 * 119.95324 * 0.02562 * 25 24 23 28 28 C 1.33870 * 114.47727 * 0.02562 * 20 18 17 29 29 O 1.21229 * 125.39947 * 180.02562 * 28 20 18 30 30 C 1.46850 * 111.19846 * 298.26004 * 14 13 12 31 31 H 0.96998 * 120.00239 * 359.72414 * 1 2 3 32 32 H 1.09006 * 109.52396 * 297.50051 * 11 9 7 33 33 H 1.09003 * 109.52408 * 57.68815 * 11 9 7 34 34 H 1.09003 * 109.50576 * 182.44449 * 12 11 9 35 35 H 1.09003 * 109.46743 * 62.34371 * 12 11 9 36 36 H 1.08996 * 109.46357 * 299.14338 * 13 12 11 37 37 H 1.08996 * 109.46265 * 179.16854 * 13 12 11 38 38 H 1.09002 * 110.60766 * 237.03831 * 17 15 14 39 39 H 1.09004 * 110.60777 * 0.02562 * 17 15 14 40 40 H 1.08008 * 119.97428 * 0.02562 * 22 21 20 41 41 H 1.08004 * 119.93670 * 180.23646 * 23 22 21 42 42 H 1.07997 * 119.96308 * 179.72985 * 24 23 22 43 43 H 0.96694 * 114.00264 * 269.98127 * 26 25 24 44 44 H 1.07998 * 120.06214 * 180.02562 * 27 25 24 45 45 H 1.09002 * 109.46144 * 301.72712 * 30 14 13 46 46 H 1.09002 * 109.45268 * 181.75382 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5003 2.0443 -1.4000 5 1 1.4448 2.6537 0.6964 6 1 3.5449 1.4412 0.7037 7 6 2.0045 -1.1941 -0.0057 8 1 1.4649 -2.1291 -0.0379 9 6 3.5110 -1.1945 0.0329 10 1 3.8868 -0.2750 -0.4159 11 6 3.9851 -1.2852 1.4859 12 6 5.5150 -1.3467 1.5125 13 6 5.9876 -2.5462 0.6881 14 7 5.5092 -2.4112 -0.6937 15 6 6.0588 -3.4729 -1.5473 16 1 5.7076 -3.3594 -2.5729 17 6 7.6002 -3.4685 -1.4942 18 6 7.9395 -4.8302 -0.9282 19 8 9.0594 -5.2450 -0.7201 20 7 6.8067 -5.5043 -0.6936 21 6 6.7923 -6.8032 -0.1661 22 6 6.7763 -6.9947 1.2093 23 6 6.7572 -8.2743 1.7292 24 6 6.7645 -9.3669 0.8829 25 6 6.7857 -9.1814 -0.4921 26 8 6.7923 -10.2566 -1.3232 27 6 6.8001 -7.8984 -1.0173 28 6 5.6892 -4.8364 -1.0053 29 8 4.5598 -5.2570 -0.8734 30 6 4.0418 -2.3985 -0.7487 31 1 -0.4850 0.8400 0.0040 32 1 3.6457 -0.4071 2.0354 33 1 3.5769 -2.1847 1.9469 34 1 5.8570 -1.4551 2.5418 35 1 5.9228 -0.4295 1.0875 36 1 5.5906 -3.4640 1.1218 37 1 7.0769 -2.5838 0.6931 38 1 8.0182 -3.3538 -2.4944 39 1 7.9591 -2.6788 -0.8341 40 1 6.7746 -6.1425 1.8729 41 1 6.7409 -8.4212 2.7991 42 1 6.7539 -10.3663 1.2922 43 1 7.6775 -10.5721 -1.5510 44 1 6.8161 -7.7520 -2.0871 45 1 3.6539 -3.3170 -0.3082 46 1 3.7180 -2.3288 -1.7872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594659588.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:29 Heat of formation + Delta-G solvation = -87.300311 kcal Electronic energy + Delta-G solvation = -30928.947242 eV Core-core repulsion = 26783.219132 eV Total energy + Delta-G solvation = -4145.728111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.59722 -40.78910 -40.11741 -39.38206 -37.91835 -37.05357 -35.72907 -34.34898 -32.47509 -32.05862 -31.22175 -30.04935 -27.20080 -26.90988 -24.99972 -24.18966 -23.84304 -23.48594 -22.25389 -21.29359 -20.39907 -19.53426 -19.02488 -18.41924 -18.08726 -17.63093 -17.52356 -17.02266 -16.57280 -16.45294 -15.92315 -15.88928 -15.70370 -15.63606 -15.19131 -14.90305 -14.81830 -14.57178 -14.47564 -14.24367 -13.72886 -13.58076 -13.54801 -13.40178 -12.99891 -12.94590 -12.86079 -12.60227 -12.31569 -12.16213 -11.83307 -11.76167 -11.67514 -11.44780 -11.33532 -11.24626 -11.11391 -10.86048 -10.62651 -10.17100 -9.86689 -9.43903 -8.26144 -6.31775 -0.10132 0.06828 0.28559 1.26437 1.40864 1.41519 1.45228 1.54535 2.34315 2.39714 2.60984 3.07859 3.09290 3.11993 3.19905 3.32448 3.71156 3.87316 3.93351 3.97150 3.97789 4.04336 4.11569 4.29616 4.30583 4.41907 4.51982 4.63057 4.67312 4.72823 4.75947 4.80786 4.83654 4.94870 5.04086 5.06082 5.17493 5.18202 5.20374 5.21852 5.51938 5.53290 5.60081 5.62359 5.72817 5.90232 5.93987 6.12690 6.36545 6.60671 6.71349 6.76901 7.34775 8.91396 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017712 B = 0.003030 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.484801 B = 9238.180772 C = 9771.405139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.232 1.232 7 C -0.518 4.518 8 H 0.018 0.982 9 C 0.023 3.977 10 H 0.047 0.953 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.045 3.955 14 N -0.496 5.496 15 C 0.056 3.944 16 H 0.158 0.842 17 C -0.132 4.132 18 C 0.533 3.467 19 O -0.500 6.500 20 N -0.533 5.533 21 C 0.101 3.899 22 C -0.129 4.129 23 C -0.088 4.088 24 C -0.132 4.132 25 C 0.114 3.886 26 O -0.503 6.503 27 C -0.147 4.147 28 C 0.493 3.507 29 O -0.503 6.503 30 C 0.075 3.925 31 H 0.265 0.735 32 H 0.045 0.955 33 H 0.029 0.971 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.011 0.989 37 H 0.108 0.892 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.129 0.871 41 H 0.166 0.834 42 H 0.163 0.837 43 H 0.414 0.586 44 H 0.130 0.870 45 H 0.018 0.982 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.930 -13.035 -0.699 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.155 1.155 7 C -0.556 4.556 8 H 0.036 0.964 9 C 0.004 3.996 10 H 0.065 0.935 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.083 4.083 14 N -0.220 5.220 15 C -0.056 4.056 16 H 0.175 0.825 17 C -0.171 4.171 18 C 0.324 3.676 19 O -0.372 6.372 20 N -0.275 5.275 21 C 0.013 3.987 22 C -0.148 4.148 23 C -0.106 4.106 24 C -0.151 4.151 25 C 0.069 3.931 26 O -0.316 6.316 27 C -0.167 4.167 28 C 0.281 3.719 29 O -0.373 6.373 30 C -0.052 4.052 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.029 0.971 37 H 0.126 0.874 38 H 0.187 0.813 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.184 0.816 42 H 0.181 0.819 43 H 0.274 0.726 44 H 0.148 0.852 45 H 0.036 0.964 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.331 -12.880 -0.677 26.659 hybrid contribution -0.859 -0.513 0.282 1.040 sum 22.472 -13.393 -0.394 26.163 Atomic orbital electron populations 1.70086 1.08620 1.28112 1.52733 1.26032 0.95457 1.03416 0.93852 0.85710 0.79889 0.77762 0.79415 1.19066 1.21956 1.15522 1.21231 0.91669 0.92527 1.50185 0.96379 1.19081 0.92656 0.95065 0.92811 0.93511 1.21807 0.95446 0.99686 0.98447 1.21608 0.94796 0.98419 0.99889 1.22371 1.01152 0.97216 0.87512 1.62484 1.09584 1.39992 1.09911 1.23034 0.96996 0.83785 1.01819 0.82516 1.22807 0.92574 0.93350 1.08386 1.21503 0.82485 0.88379 0.75182 1.90762 1.22242 1.74018 1.50187 1.44763 1.10499 1.14344 1.57883 1.17764 1.04523 0.83544 0.92905 1.21465 1.00507 0.99574 0.93253 1.21310 0.97084 0.90336 1.01899 1.21882 0.99845 1.01385 0.91946 1.18308 0.99522 0.85656 0.89630 1.84797 1.35726 1.44793 1.66332 1.21546 1.02571 0.92109 1.00473 1.23016 0.83396 0.89415 0.76058 1.90800 1.22419 1.73223 1.50824 1.22088 0.84611 0.97863 1.00654 0.92613 0.93607 0.95219 0.89902 0.90059 0.97052 0.87392 0.81274 0.82956 0.85298 0.81609 0.81905 0.72565 0.85185 0.96372 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.53 13.96 21.45 0.30 -60.23 16 2 C 0.01 0.52 5.47 84.66 0.46 0.98 16 3 Si 0.95 43.32 26.61 68.60 1.83 45.15 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.23 -9.47 6.29 99.48 0.63 -8.84 16 7 C -0.52 -29.80 8.87 25.60 0.23 -29.58 16 8 H 0.02 1.19 8.06 -2.91 -0.02 1.16 16 9 C 0.02 1.04 1.81 -11.49 -0.02 1.02 16 10 H 0.05 2.05 5.49 -2.39 -0.01 2.03 16 11 C -0.12 -4.62 5.12 30.68 0.16 -4.46 16 12 C -0.11 -3.12 6.09 30.65 0.19 -2.94 16 13 C 0.04 1.17 4.76 86.32 0.41 1.58 16 14 N -0.50 -13.99 4.68 -871.90 -4.08 -18.07 16 15 C 0.06 1.23 3.24 44.78 0.15 1.37 16 16 H 0.16 2.87 8.13 -2.39 -0.02 2.85 16 17 C -0.13 -1.84 6.10 30.46 0.19 -1.66 16 18 C 0.53 11.27 8.04 87.99 0.71 11.98 16 19 O -0.50 -12.94 17.65 -2.86 -0.05 -12.99 16 20 N -0.53 -13.39 2.59 -579.77 -1.50 -14.89 16 21 C 0.10 2.64 4.78 38.07 0.18 2.82 16 22 C -0.13 -3.01 9.96 22.40 0.22 -2.79 16 23 C -0.09 -1.56 10.03 22.24 0.22 -1.34 16 24 C -0.13 -2.24 9.98 22.39 0.22 -2.02 16 25 C 0.11 2.31 6.70 22.49 0.15 2.46 16 26 O -0.50 -8.34 13.50 -92.42 -1.25 -9.59 16 27 C -0.15 -3.56 9.91 22.48 0.22 -3.34 16 28 C 0.49 14.22 5.95 87.99 0.52 14.75 16 29 O -0.50 -19.53 15.72 -2.87 -0.05 -19.58 16 30 C 0.08 2.97 4.32 86.33 0.37 3.34 16 31 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.05 1.89 7.35 -2.38 -0.02 1.87 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.01 0.34 7.31 -2.39 -0.02 0.33 16 37 H 0.11 2.01 5.98 -2.39 -0.01 1.99 16 38 H 0.17 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.15 1.71 6.24 -2.38 -0.01 1.69 16 40 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.41 2.42 9.06 -74.06 -0.67 1.75 16 44 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 45 H 0.02 0.82 6.30 -2.39 -0.02 0.81 16 46 H 0.07 2.73 8.11 -2.39 -0.02 2.71 16 Total: -1.00 -82.53 371.50 0.06 -82.47 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.27 Total: 15.55 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 4.58 Total: -7.82 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -5.28 Total: -93.19 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.34 Total: -42.15 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.83 Total: 45.15 kcal Total: -82.53 0.06 -82.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594659588.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.831 kcal (2) G-P(sol) polarization free energy of solvation -82.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds