Wall clock time and date at job start Wed Apr 1 2020 02:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48493 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47262 * 300.00360 * 3 2 1 6 6 H 1.48509 * 109.46897 * 60.00302 * 3 2 1 7 7 C 1.37883 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99832 * 0.26635 * 7 2 1 10 10 H 1.09004 * 109.50466 * 59.73476 * 9 7 2 11 11 C 1.53121 * 109.50749 * 299.65381 * 9 7 2 12 12 C 1.53121 * 109.15893 * 182.40507 * 11 9 7 13 13 C 1.53027 * 109.28167 * 57.65154 * 12 11 9 14 14 N 1.46848 * 109.52603 * 300.82161 * 13 12 11 15 15 C 1.46899 * 111.00004 * 185.84039 * 14 13 12 16 16 H 1.09003 * 110.54481 * 66.79944 * 15 14 13 17 17 C 1.54233 * 110.60434 * 303.94774 * 15 14 13 18 18 C 1.51315 * 103.55505 * 241.48558 * 17 15 14 19 19 O 1.21228 * 125.39544 * 179.97438 * 18 17 15 20 20 N 1.33870 * 109.20936 * 359.97438 * 18 17 15 21 21 C 1.40193 * 122.76578 * 179.97438 * 20 18 17 22 22 C 1.38887 * 120.03656 * 112.73383 * 21 20 18 23 23 C 1.38132 * 120.04415 * 180.02562 * 22 21 20 24 24 C 1.38203 * 120.12272 * 0.02562 * 23 22 21 25 25 C 1.38758 * 120.07314 * 359.97438 * 24 23 22 26 26 O 1.35902 * 120.02132 * 180.02562 * 25 24 23 27 27 C 1.38638 * 119.95597 * 359.76761 * 25 24 23 28 28 C 1.33879 * 114.47728 * 0.02562 * 20 18 17 29 29 O 1.21224 * 125.40162 * 180.02562 * 28 20 18 30 30 C 1.46848 * 111.23226 * 61.72128 * 14 13 12 31 31 H 0.96998 * 120.00196 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.51837 * 302.30422 * 11 9 7 33 33 H 1.09000 * 109.52033 * 62.43613 * 11 9 7 34 34 H 1.09003 * 109.49966 * 177.59798 * 12 11 9 35 35 H 1.09006 * 109.50150 * 297.66684 * 12 11 9 36 36 H 1.09006 * 109.46532 * 60.83783 * 13 12 11 37 37 H 1.08998 * 109.46735 * 180.80807 * 13 12 11 38 38 H 1.08997 * 110.60506 * 0.02562 * 17 15 14 39 39 H 1.09006 * 110.60151 * 122.81321 * 17 15 14 40 40 H 1.07997 * 119.97430 * 0.03700 * 22 21 20 41 41 H 1.08001 * 119.93764 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.96654 * 179.97438 * 24 23 22 43 43 H 0.96708 * 113.99828 * 90.00158 * 26 25 24 44 44 H 1.08001 * 120.06042 * 180.24418 * 27 25 24 45 45 H 1.08998 * 109.49454 * 178.28447 * 30 14 13 46 46 H 1.09000 * 109.42729 * 58.31527 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0072 10 1 0.6243 -2.5529 -0.8973 11 6 0.3720 -2.5884 1.2433 12 6 -0.3436 -3.9420 1.2590 13 6 0.6964 -5.0638 1.2192 14 7 1.5113 -4.9348 0.0044 15 6 2.4286 -6.0734 -0.1376 16 1 1.8720 -6.9926 -0.3205 17 6 3.3150 -6.2160 1.1165 18 6 4.7181 -6.0280 0.5823 19 8 5.7325 -6.0638 1.2451 20 7 4.6619 -5.8157 -0.7383 21 6 5.8049 -5.6050 -1.5222 22 6 6.1834 -6.5494 -2.4676 23 6 7.3098 -6.3421 -3.2397 24 6 8.0632 -5.1955 -3.0736 25 6 7.6897 -4.2487 -2.1305 26 8 8.4310 -3.1213 -1.9684 27 6 6.5567 -4.4510 -1.3576 28 6 3.4242 -5.8203 -1.2486 29 8 3.1453 -5.6495 -2.4159 30 6 2.2450 -3.6629 -0.0113 31 1 -0.4850 0.8400 -0.0004 32 1 0.9942 -2.4950 2.1333 33 1 -0.3652 -1.7856 1.2283 34 1 -0.9380 -4.0288 2.1685 35 1 -0.9961 -4.0188 0.3892 36 1 1.3393 -4.9945 2.0968 37 1 0.1898 -6.0289 1.2158 38 1 3.0749 -5.4423 1.8458 39 1 3.1992 -7.2061 1.5575 40 1 5.5964 -7.4463 -2.5992 41 1 7.6023 -7.0775 -3.9747 42 1 8.9437 -5.0362 -3.6783 43 1 8.1534 -2.3839 -2.5291 44 1 6.2622 -3.7132 -0.6259 45 1 2.8624 -3.6101 -0.9080 46 1 2.8811 -3.6004 0.8717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594659590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:36 Heat of formation + Delta-G solvation = -60.524149 kcal Electronic energy + Delta-G solvation = -31220.026909 eV Core-core repulsion = 27075.459900 eV Total energy + Delta-G solvation = -4144.567009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48836 -39.75949 -38.75840 -38.20684 -36.90075 -35.75176 -34.32666 -32.58095 -30.97307 -30.16504 -30.03977 -28.83976 -26.13373 -25.09275 -23.69161 -23.40456 -22.69656 -21.75984 -21.22207 -20.00462 -18.76085 -18.43438 -17.32572 -17.20133 -16.59735 -16.53069 -16.14689 -15.72690 -15.37866 -15.00926 -14.76552 -14.70102 -14.38246 -14.20991 -13.96214 -13.75658 -13.52971 -13.22610 -12.72799 -12.66852 -12.55346 -12.47475 -12.22093 -12.04692 -11.91135 -11.62123 -11.04519 -11.02114 -10.85384 -10.72748 -10.58440 -10.34198 -10.22695 -10.05842 -9.93052 -9.59440 -9.23267 -9.08445 -8.83172 -8.80532 -8.38531 -8.03271 -6.04055 -4.10392 0.86646 1.03977 1.44787 2.27378 2.58728 3.26241 3.27044 3.34688 3.37942 3.88485 4.00697 4.13471 4.23568 4.34608 4.46775 4.65872 4.81116 4.86439 4.86680 5.02738 5.20596 5.26379 5.30649 5.41524 5.45819 5.56045 5.62095 5.78229 5.90227 6.01085 6.01795 6.10530 6.12204 6.14696 6.30409 6.49312 6.54138 6.58359 6.61998 6.76130 7.03507 7.16457 7.22290 7.33604 7.45104 7.48450 7.68932 7.74118 7.97798 8.07484 8.37678 8.92588 9.54417 11.02085 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.004335 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.037355 B = 6456.898516 C = 8388.504762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.052 0.948 9 C 0.058 3.942 10 H 0.038 0.962 11 C -0.113 4.113 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.510 5.510 15 C 0.057 3.943 16 H 0.132 0.868 17 C -0.196 4.196 18 C 0.533 3.467 19 O -0.475 6.475 20 N -0.533 5.533 21 C 0.133 3.867 22 C -0.111 4.111 23 C -0.094 4.094 24 C -0.137 4.137 25 C 0.118 3.882 26 O -0.496 6.496 27 C -0.123 4.123 28 C 0.537 3.463 29 O -0.449 6.449 30 C 0.057 3.943 31 H 0.260 0.740 32 H 0.031 0.969 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.395 0.605 44 H 0.135 0.865 45 H 0.058 0.942 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 -14.686 -1.969 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.039 3.961 10 H 0.056 0.944 11 C -0.151 4.151 12 C -0.155 4.155 13 C -0.067 4.067 14 N -0.235 5.235 15 C -0.055 4.055 16 H 0.150 0.850 17 C -0.237 4.237 18 C 0.323 3.677 19 O -0.345 6.345 20 N -0.275 5.275 21 C 0.044 3.956 22 C -0.130 4.130 23 C -0.113 4.113 24 C -0.156 4.156 25 C 0.073 3.927 26 O -0.306 6.306 27 C -0.143 4.143 28 C 0.325 3.675 29 O -0.316 6.316 30 C -0.070 4.070 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.252 0.748 44 H 0.153 0.847 45 H 0.076 0.924 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.785 -14.810 -2.262 17.367 hybrid contribution 0.845 1.333 0.403 1.629 sum 9.630 -13.477 -1.859 16.668 Atomic orbital electron populations 1.69883 1.05804 1.26355 1.50422 1.24900 0.94827 0.98929 0.94950 0.86584 0.80133 0.83928 0.77648 1.19892 1.20948 1.20973 1.21104 0.92733 0.90547 1.51083 0.92982 1.18644 0.92386 0.89815 0.95208 0.94406 1.21688 1.00138 0.94909 0.98348 1.21689 0.97049 0.96030 1.00777 1.22170 0.95438 0.99808 0.89280 1.62280 1.21484 1.00683 1.39028 1.22649 0.92677 0.99496 0.90690 0.84996 1.23340 0.91515 1.07353 1.01524 1.20917 0.92335 0.73813 0.80668 1.90773 1.36364 1.46214 1.61151 1.44503 1.07614 1.64950 1.10385 1.17422 0.88345 0.94864 0.94958 1.21123 0.97365 0.98475 0.96025 1.20870 0.94122 0.97298 0.98975 1.21519 1.00889 0.95016 0.98161 1.18172 0.90411 0.88967 0.95130 1.84822 1.56728 1.21954 1.67123 1.21485 0.94658 0.97117 1.01033 1.20787 0.82319 0.74363 0.90030 1.90780 1.80895 1.42518 1.17363 1.22537 0.97090 0.88662 0.98674 0.93000 0.94969 0.88784 0.92909 0.91692 0.94822 0.91401 0.85445 0.85745 0.85294 0.84630 0.84790 0.74832 0.84666 0.92361 0.95808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.68 11.36 55.43 0.63 -24.05 16 2 C 0.07 1.78 5.31 -17.82 -0.09 1.68 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.85 8.56 -34.44 -0.29 -14.14 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 10 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 11 C -0.11 -2.49 5.03 -26.61 -0.13 -2.62 16 12 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 13 C 0.06 0.87 4.97 -3.84 -0.02 0.85 16 14 N -0.51 -8.40 4.76 -226.94 -1.08 -9.48 16 15 C 0.06 0.75 3.40 -67.92 -0.23 0.52 16 16 H 0.13 1.32 8.14 -51.93 -0.42 0.89 16 17 C -0.20 -2.21 5.68 -26.94 -0.15 -2.37 16 18 C 0.53 7.67 7.95 -11.09 -0.09 7.58 16 19 O -0.47 -8.06 17.60 5.60 0.10 -7.96 16 20 N -0.53 -7.88 2.61 -59.43 -0.16 -8.04 16 21 C 0.13 1.96 4.94 -83.62 -0.41 1.54 16 22 C -0.11 -1.36 9.79 -39.38 -0.39 -1.75 16 23 C -0.09 -0.96 10.03 -39.63 -0.40 -1.36 16 24 C -0.14 -1.46 9.98 -39.40 -0.39 -1.86 16 25 C 0.12 1.52 6.70 -39.24 -0.26 1.26 16 26 O -0.50 -5.83 13.50 -19.43 -0.26 -6.09 16 27 C -0.12 -1.84 9.74 -39.26 -0.38 -2.23 16 28 C 0.54 8.33 5.44 -11.08 -0.06 8.27 16 29 O -0.45 -8.31 17.51 5.61 0.10 -8.21 16 30 C 0.06 1.15 4.02 -3.83 -0.02 1.13 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 2.36 6.16 -51.93 -0.32 2.04 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.03 0.46 6.35 -51.93 -0.33 0.13 16 37 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.13 1.54 5.31 -51.93 -0.28 1.27 16 39 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.39 2.88 9.06 45.56 0.41 3.29 16 44 H 0.14 2.16 8.06 -52.49 -0.42 1.73 16 45 H 0.06 1.27 6.51 -51.93 -0.34 0.93 16 46 H 0.02 0.47 7.06 -51.93 -0.37 0.11 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -33.02 373.84 -9.16 -42.18 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.41 Total: 4.49 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -3.69 Total: -4.49 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.61 Total: -41.56 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.07 Total: -22.26 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.02 -9.16 -42.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594659590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.345 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds