Wall clock time and date at job start Wed Apr 1 2020 02:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48493 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47262 * 300.00360 * 3 2 1 6 6 H 1.48509 * 109.46897 * 60.00302 * 3 2 1 7 7 C 1.37883 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99832 * 0.26635 * 7 2 1 10 10 H 1.09004 * 109.50466 * 59.73476 * 9 7 2 11 11 C 1.53121 * 109.50749 * 299.65381 * 9 7 2 12 12 C 1.53121 * 109.15893 * 182.40507 * 11 9 7 13 13 C 1.53027 * 109.28167 * 57.65154 * 12 11 9 14 14 N 1.46848 * 109.52603 * 300.82161 * 13 12 11 15 15 C 1.46899 * 111.00004 * 185.84039 * 14 13 12 16 16 H 1.09003 * 110.54481 * 66.79944 * 15 14 13 17 17 C 1.54233 * 110.60434 * 303.94774 * 15 14 13 18 18 C 1.51315 * 103.55505 * 241.48558 * 17 15 14 19 19 O 1.21228 * 125.39544 * 179.97438 * 18 17 15 20 20 N 1.33870 * 109.20936 * 359.97438 * 18 17 15 21 21 C 1.40193 * 122.76578 * 179.97438 * 20 18 17 22 22 C 1.38887 * 120.03656 * 112.73383 * 21 20 18 23 23 C 1.38132 * 120.04415 * 180.02562 * 22 21 20 24 24 C 1.38203 * 120.12272 * 0.02562 * 23 22 21 25 25 C 1.38758 * 120.07314 * 359.97438 * 24 23 22 26 26 O 1.35902 * 120.02132 * 180.02562 * 25 24 23 27 27 C 1.38638 * 119.95597 * 359.76761 * 25 24 23 28 28 C 1.33879 * 114.47728 * 0.02562 * 20 18 17 29 29 O 1.21224 * 125.40162 * 180.02562 * 28 20 18 30 30 C 1.46848 * 111.23226 * 61.72128 * 14 13 12 31 31 H 0.96998 * 120.00196 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.51837 * 302.30422 * 11 9 7 33 33 H 1.09000 * 109.52033 * 62.43613 * 11 9 7 34 34 H 1.09003 * 109.49966 * 177.59798 * 12 11 9 35 35 H 1.09006 * 109.50150 * 297.66684 * 12 11 9 36 36 H 1.09006 * 109.46532 * 60.83783 * 13 12 11 37 37 H 1.08998 * 109.46735 * 180.80807 * 13 12 11 38 38 H 1.08997 * 110.60506 * 0.02562 * 17 15 14 39 39 H 1.09006 * 110.60151 * 122.81321 * 17 15 14 40 40 H 1.07997 * 119.97430 * 0.03700 * 22 21 20 41 41 H 1.08001 * 119.93764 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.96654 * 179.97438 * 24 23 22 43 43 H 0.96708 * 113.99828 * 90.00158 * 26 25 24 44 44 H 1.08001 * 120.06042 * 180.24418 * 27 25 24 45 45 H 1.08998 * 109.49454 * 178.28447 * 30 14 13 46 46 H 1.09000 * 109.42729 * 58.31527 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0072 10 1 0.6243 -2.5529 -0.8973 11 6 0.3720 -2.5884 1.2433 12 6 -0.3436 -3.9420 1.2590 13 6 0.6964 -5.0638 1.2192 14 7 1.5113 -4.9348 0.0044 15 6 2.4286 -6.0734 -0.1376 16 1 1.8720 -6.9926 -0.3205 17 6 3.3150 -6.2160 1.1165 18 6 4.7181 -6.0280 0.5823 19 8 5.7325 -6.0638 1.2451 20 7 4.6619 -5.8157 -0.7383 21 6 5.8049 -5.6050 -1.5222 22 6 6.1834 -6.5494 -2.4676 23 6 7.3098 -6.3421 -3.2397 24 6 8.0632 -5.1955 -3.0736 25 6 7.6897 -4.2487 -2.1305 26 8 8.4310 -3.1213 -1.9684 27 6 6.5567 -4.4510 -1.3576 28 6 3.4242 -5.8203 -1.2486 29 8 3.1453 -5.6495 -2.4159 30 6 2.2450 -3.6629 -0.0113 31 1 -0.4850 0.8400 -0.0004 32 1 0.9942 -2.4950 2.1333 33 1 -0.3652 -1.7856 1.2283 34 1 -0.9380 -4.0288 2.1685 35 1 -0.9961 -4.0188 0.3892 36 1 1.3393 -4.9945 2.0968 37 1 0.1898 -6.0289 1.2158 38 1 3.0749 -5.4423 1.8458 39 1 3.1992 -7.2061 1.5575 40 1 5.5964 -7.4463 -2.5992 41 1 7.6023 -7.0775 -3.9747 42 1 8.9437 -5.0362 -3.6783 43 1 8.1534 -2.3839 -2.5291 44 1 6.2622 -3.7132 -0.6259 45 1 2.8624 -3.6101 -0.9080 46 1 2.8811 -3.6004 0.8717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594659590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:35 Heat of formation + Delta-G solvation = -84.767693 kcal Electronic energy + Delta-G solvation = -31221.078188 eV Core-core repulsion = 27075.459900 eV Total energy + Delta-G solvation = -4145.618288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.61436 -40.75452 -39.99948 -39.54304 -37.91193 -36.99751 -35.83660 -34.18660 -32.20447 -31.78219 -31.12963 -29.90038 -27.32112 -27.00683 -24.96008 -24.46325 -23.71064 -23.23084 -22.61152 -21.05627 -20.29685 -19.54623 -18.74612 -18.34399 -18.00604 -17.53359 -17.49723 -16.94437 -16.50107 -16.48013 -16.18940 -15.84370 -15.71369 -15.44084 -15.08021 -14.93333 -14.82687 -14.64203 -14.41058 -14.02285 -13.78216 -13.58279 -13.40658 -13.29489 -12.96491 -12.92652 -12.75677 -12.67850 -12.55376 -12.12165 -11.85875 -11.79012 -11.60160 -11.48626 -11.41090 -11.21795 -10.93573 -10.71906 -10.41774 -10.07127 -9.78204 -9.33672 -8.13429 -6.27276 -0.08764 0.08172 0.28025 1.18694 1.34367 1.36689 1.46871 1.49541 2.34574 2.37536 2.76803 3.00558 3.13420 3.13806 3.20273 3.31573 3.70990 3.89448 3.94223 3.95038 4.05043 4.13416 4.23090 4.30983 4.31448 4.45784 4.58225 4.64214 4.68073 4.72736 4.81377 4.88975 4.95298 5.04770 5.07597 5.15011 5.19673 5.21490 5.40015 5.47745 5.53643 5.60062 5.62510 5.82758 6.02315 6.09107 6.11353 6.17469 6.36556 6.58883 6.66231 6.83900 7.40498 8.91095 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.004335 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.037355 B = 6456.898516 C = 8388.504762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.040 0.960 9 C 0.056 3.944 10 H -0.005 1.005 11 C -0.105 4.105 12 C -0.112 4.112 13 C 0.062 3.938 14 N -0.524 5.524 15 C 0.063 3.937 16 H 0.179 0.821 17 C -0.180 4.180 18 C 0.528 3.472 19 O -0.507 6.507 20 N -0.534 5.534 21 C 0.103 3.897 22 C -0.120 4.120 23 C -0.081 4.081 24 C -0.131 4.131 25 C 0.111 3.889 26 O -0.506 6.506 27 C -0.157 4.157 28 C 0.534 3.466 29 O -0.488 6.488 30 C 0.079 3.921 31 H 0.262 0.738 32 H 0.027 0.973 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.176 0.824 40 H 0.143 0.857 41 H 0.177 0.823 42 H 0.166 0.834 43 H 0.412 0.588 44 H 0.107 0.893 45 H 0.031 0.969 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.079 -17.308 -1.643 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.773 3.227 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.577 4.577 8 H 0.059 0.941 9 C 0.037 3.963 10 H 0.013 0.987 11 C -0.144 4.144 12 C -0.150 4.150 13 C -0.065 4.065 14 N -0.249 5.249 15 C -0.048 4.048 16 H 0.196 0.804 17 C -0.220 4.220 18 C 0.320 3.680 19 O -0.380 6.380 20 N -0.274 5.274 21 C 0.015 3.985 22 C -0.139 4.139 23 C -0.099 4.099 24 C -0.150 4.150 25 C 0.065 3.935 26 O -0.320 6.320 27 C -0.177 4.177 28 C 0.323 3.677 29 O -0.357 6.357 30 C -0.048 4.048 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.193 0.807 40 H 0.161 0.839 41 H 0.194 0.806 42 H 0.183 0.817 43 H 0.271 0.729 44 H 0.125 0.875 45 H 0.050 0.950 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.279 -17.431 -1.926 19.840 hybrid contribution 0.746 2.188 0.224 2.322 sum 10.024 -15.243 -1.702 18.323 Atomic orbital electron populations 1.70013 1.06885 1.27072 1.50842 1.25609 0.95647 1.01944 0.94679 0.85677 0.78878 0.80228 0.77917 1.19819 1.20502 1.20055 1.21447 0.92463 0.92497 1.51292 0.94148 1.18541 0.92780 0.90593 0.94394 0.98719 1.21474 0.99036 0.97098 0.96770 1.21606 0.97618 0.94161 1.01594 1.22278 0.94712 1.00625 0.88835 1.62138 1.22098 0.99883 1.40762 1.22853 0.92286 0.99398 0.90274 0.80411 1.23424 0.88187 1.10084 1.00335 1.21532 0.93341 0.72764 0.80344 1.90752 1.37823 1.47760 1.61637 1.44623 1.07694 1.64306 1.10797 1.17786 0.88789 0.95705 0.96268 1.21419 0.98369 0.98468 0.95629 1.21372 0.92597 0.97547 0.98429 1.21871 1.01606 0.94200 0.97277 1.18372 0.89849 0.89867 0.95372 1.84765 1.56601 1.22537 1.68076 1.21484 0.96666 0.97437 1.02153 1.21311 0.82962 0.73271 0.90136 1.90749 1.81491 1.44369 1.19123 1.22013 0.95695 0.89812 0.97303 0.92904 0.95378 0.92400 0.90083 0.93038 0.93114 0.86601 0.85686 0.80658 0.83892 0.80574 0.81661 0.72864 0.87482 0.95037 0.95928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.54 11.36 21.45 0.24 -52.30 16 2 C 0.02 1.16 5.31 84.66 0.45 1.61 16 3 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.37 8.56 25.60 0.22 -30.15 16 8 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 9 C 0.06 2.82 2.26 -11.49 -0.03 2.79 16 10 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 11 C -0.11 -4.77 5.03 30.68 0.15 -4.61 16 12 C -0.11 -3.71 6.09 30.64 0.19 -3.52 16 13 C 0.06 1.56 4.97 86.32 0.43 1.99 16 14 N -0.52 -16.41 4.76 -871.89 -4.15 -20.56 16 15 C 0.06 1.47 3.40 44.78 0.15 1.62 16 16 H 0.18 2.59 8.14 -2.39 -0.02 2.57 16 17 C -0.18 -3.47 5.68 30.46 0.17 -3.30 16 18 C 0.53 14.86 7.95 87.99 0.70 15.56 16 19 O -0.51 -17.31 17.60 -2.87 -0.05 -17.36 16 20 N -0.53 -15.91 2.61 -579.77 -1.51 -17.43 16 21 C 0.10 3.13 4.94 38.07 0.19 3.31 16 22 C -0.12 -2.84 9.79 22.40 0.22 -2.62 16 23 C -0.08 -1.47 10.03 22.24 0.22 -1.24 16 24 C -0.13 -2.56 9.98 22.39 0.22 -2.34 16 25 C 0.11 2.89 6.70 22.49 0.15 3.04 16 26 O -0.51 -12.10 13.50 -92.44 -1.25 -13.34 16 27 C -0.16 -5.03 9.74 22.48 0.22 -4.81 16 28 C 0.53 16.37 5.44 87.99 0.48 16.85 16 29 O -0.49 -18.38 17.51 -2.86 -0.05 -18.43 16 30 C 0.08 3.29 4.02 86.33 0.35 3.64 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.56 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 3.02 6.16 -2.39 -0.01 3.01 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.05 1.16 6.35 -2.38 -0.02 1.15 16 37 H 0.12 1.97 8.12 -2.39 -0.02 1.95 16 38 H 0.13 2.63 5.31 -2.39 -0.01 2.61 16 39 H 0.18 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 43 H 0.41 6.17 9.06 -74.05 -0.67 5.50 16 44 H 0.11 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.03 1.45 6.51 -2.39 -0.02 1.43 16 46 H 0.02 0.93 7.06 -2.39 -0.02 0.91 16 Total: -1.00 -79.08 373.84 0.10 -78.98 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.35 Total: 16.23 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 4.49 Total: -2.19 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -5.42 Total: -90.29 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.35 Total: -49.13 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -79.08 0.10 -78.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594659590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.784 kcal (2) G-P(sol) polarization free energy of solvation -79.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds